Crnde (colorectal neoplasia differentially expressed) - Rat Genome Database

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Gene: Crnde (colorectal neoplasia differentially expressed) Rattus norvegicus
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Symbol: Crnde
Name: colorectal neoplasia differentially expressed
RGD ID: 10398753
Description: Orthologous to human CRNDE (colorectal neoplasia differentially expressed).
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: colorectal neoplasia differentially expressed (non-protein coding)
RGD Orthologs
Human
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81930,816,860 - 30,826,853 (+)NCBIGRCr8
mRatBN7.21914,643,887 - 14,653,880 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1916,340,294 - 16,350,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01921,535,097 - 21,545,087 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01924,481,284 - 24,491,263 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01916,405,308 - 16,415,786 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1914,557,816 - 14,567,809 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:26034286   PMID:31131445   PMID:32031750   PMID:32234564   PMID:33479807   PMID:34612146   PMID:35802196   PMID:35852716   PMID:37178498   PMID:37390564   PMID:39407279  


Genomics

Comparative Map Data
Crnde
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81930,816,860 - 30,826,853 (+)NCBIGRCr8
mRatBN7.21914,643,887 - 14,653,880 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1916,340,294 - 16,350,288 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01921,535,097 - 21,545,087 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01924,481,284 - 24,491,263 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01916,405,308 - 16,415,786 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1914,557,816 - 14,567,809 (+)NCBICelera
Cytogenetic Map19p11NCBI
CRNDE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381654,847,249 - 54,848,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1654,844,649 - 54,931,354 (-)EnsemblGRCh38hg38GRCh38
GRCh371654,881,161 - 54,882,145 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361653,510,277 - 53,516,628 (-)NCBINCBI36Build 36hg18NCBI36
Celera1639,467,460 - 39,477,829 (-)NCBICelera
Cytogenetic Map16q12.2NCBI
HuRef1640,767,470 - 40,768,498 (-)NCBIHuRef
CHM1_11656,288,106 - 56,289,134 (-)NCBICHM1_1
T2T-CHM13v2.01660,645,352 - 60,646,336 (-)NCBIT2T-CHM13v2.0
LOC100972231
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21864,347,700 - 64,357,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11670,266,629 - 70,276,859 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01635,152,064 - 35,163,292 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11654,260,104 - 54,269,935 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC111092789
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1260,979,056 - 61,039,913 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha257,613,257 - 57,674,921 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0261,520,559 - 61,581,297 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1258,345,841 - 58,407,521 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,370,929 - 59,432,556 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0260,249,469 - 60,310,226 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Crnde
12 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NR_132649
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81930,816,860 - 30,826,853 (+)NCBI
mRatBN7.21914,643,887 - 14,653,880 (+)NCBI
Rnor_6.01916,405,308 - 16,415,786 (-)NCBI
Celera1914,557,816 - 14,567,809 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:10398753 AgrOrtholog
BioCyc Gene G2FUF-6382 BioCyc
NCBI Gene Crnde ENTREZGENE
PhenoGen Crnde PhenoGen
RNAcentral URS00008E3A29 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-30 Crnde  colorectal neoplasia differentially expressed  Crnde  colorectal neoplasia differentially expressed (non-protein coding)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-09-08 Crnde  colorectal neoplasia differentially expressed (non-protein coding)      Symbol and Name status set to provisional 70820 PROVISIONAL