Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:peptide cross-linking
go back to main search page
Accession:GO:0018149 term browser browse the term
Definition:The formation of a covalent cross-link between or within protein chains.


show annotations for term's descendants           Sort by:
 
peptide cross-linking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:5559672|PMID:12917409)
Alzheimers_University_of_Toronto
RGD
PMID:12917409 GO_REF:0000024 MGI:5559672 NCBI chr 7:9,691,452...9,711,466
Ensembl chr 7:9,691,449...9,711,425
JBrowse link
G Anxa1 annexin A1 involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:16754721) RGD PMID:16754721 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Csta cystatin A involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr11:64,620,483...64,631,488
Ensembl chr11:64,620,483...64,631,488
JBrowse link
G Dsp desmoplakin involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr17:26,623,602...26,671,692
Ensembl chr17:26,623,588...26,671,800
JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:107,979,709...107,997,932
Ensembl chr 3:107,979,713...107,997,932
JBrowse link
G Evpl envoplakin involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr10:101,458,421...101,474,687
Ensembl chr10:101,458,216...101,474,763
JBrowse link
G F13a1 coagulation factor XIII A1 chain involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
ISS
(PMID:27363989)
PMID:21873635
(MGI:3513626|PMID:15507206)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15507206 PMID:27363989 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3513626, RGD:13792537 NCBI chr17:27,815,723...27,992,494
Ensembl chr17:27,815,702...27,992,700
JBrowse link
G Flg filaggrin involved_in ISO (PMID:7543090) RGD PMID:7543090 NCBI chr 2:178,888,688...178,912,731 JBrowse link
G Fn1 fibronectin 1 involved_in ISO
IEA
(PMID:3997886)
GO_REF:0000107
RGD
Ensembl
PMID:3997886 GO_REF:0000107 NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
JBrowse link
G Ivl involucrin involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr 2:178,146,694...178,160,807
Ensembl chr 2:178,147,061...178,149,100
JBrowse link
G Krt1 keratin 1 involved_in ISO
IEA
(PMID:7543090)
GO_REF:0000107
RGD
Ensembl
PMID:7543090 GO_REF:0000107 NCBI chr 7:132,976,618...132,981,844
Ensembl chr 7:132,976,620...132,981,844
JBrowse link
G Krt10 keratin 10 involved_in ISO (PMID:7543090) RGD PMID:7543090 NCBI chr10:84,338,695...84,343,279
Ensembl chr10:84,338,706...84,343,701
JBrowse link
G Krt2 keratin 2 involved_in ISO
IEA
(PMID:7543090)
GO_REF:0000107
RGD
Ensembl
PMID:7543090 GO_REF:0000107 NCBI chr 7:132,941,275...132,947,963
Ensembl chr 7:132,940,862...132,947,963
JBrowse link
G Loricrin loricrin cornified envelope precursor protein involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr 2:177,558,062...177,559,980
Ensembl chr 2:177,558,252...177,559,807
JBrowse link
G Sprr1a small proline-rich protein 1A involved_in IEA
ISO
GO_REF:0000002
(PMID:10908733), (PMID:7543090)
InterPro
RGD
PMID:7543090 PMID:10908733 GO_REF:0000002 NCBI chr 2:178,055,096...178,057,012
Ensembl chr 2:178,055,096...178,057,063
JBrowse link
G Sprr1b small proline-rich protein 1B involved_in ISO (PMID:10908733) RGD PMID:10908733 NCBI chr 2:178,009,130...178,009,567
Ensembl chr 2:178,009,130...178,009,567
JBrowse link
G Sprr3 small proline-rich protein 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:178,027,743...178,028,501
Ensembl chr 2:178,027,425...178,029,891
JBrowse link
G Tgm1 transglutaminase 1 involved_in NAS
IBA
ISO
PMID:21873635
(PMID:9722562)
RGD PMID:9722562 PMID:1979171 PMID:21873635 RGD:61767, RGD:13792537 NCBI chr15:29,191,039...29,206,000
Ensembl chr15:29,191,041...29,204,523
JBrowse link
G Tgm2 transglutaminase 2 involved_in ISO
IBA
(PMID:12506096), (PMID:23941696), (PMID:30458214), (PMID:9252372)
PMID:21873635
RGD PMID:9252372 PMID:12506096 PMID:23941696 PMID:30458214 PMID:21873635 RGD:13792537 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981
JBrowse link
G Tgm3 transglutaminase 3 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:12679341), (PMID:24643)
UniProt
RGD
PMID:24643 PMID:12679341 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:117,228,661...117,264,078
Ensembl chr 3:117,228,661...117,264,075
JBrowse link
G Tgm4 transglutaminase 4 involved_in IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 8:122,689,429...122,726,463
Ensembl chr 8:122,689,429...122,726,463
JBrowse link
G Tgm5 transglutaminase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:108,008,087...108,014,813
Ensembl chr 3:108,008,143...108,043,976
JBrowse link
G Tgm6 transglutaminase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:117,324,268...117,355,674
Ensembl chr 3:117,321,489...117,354,734
JBrowse link
G Tgm7 transglutaminase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:108,051,890...108,068,116
Ensembl chr 3:108,051,890...108,076,239
JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO (PMID:3997886) RGD PMID:3997886 NCBI chr 3:105,056,286...105,071,445
Ensembl chr 3:105,056,292...105,071,440
JBrowse link
isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgm2 transglutaminase 2 IDA RGD PMID:16341586 RGD:1579955 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981
JBrowse link
isopeptide cross-linking via N6-glycyl-L-lysine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf113a1 ring finger protein 113A1 involved_in ISO (PMID:28978524) RGD PMID:28978524 NCBI chr  X:116,428,037...116,429,164
Ensembl chr  X:116,427,684...116,433,762
JBrowse link
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07060833.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:94,944,360...94,981,873 JBrowse link
G Bgn biglycan acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461
JBrowse link
G Dcn decorin acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270
JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3807344|PMID:18757743)
Ensembl
RGD
PMID:18757743 GO_REF:0000107 MGI:3807344 NCBI chr 2:56,301,945...56,476,665
Ensembl chr 2:56,302,566...56,476,298
JBrowse link
G Mamdc2 MAM domain containing 2 acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 1:220,863,959...221,016,493
Ensembl chr 1:220,863,976...221,016,354
JBrowse link
G Ndnf neuron-derived neurotrophic factor acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr 4:94,944,749...94,987,414 JBrowse link
G Prss34 protease, serine, 34 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:14,315,913...14,317,712
Ensembl chr10:14,315,955...14,317,712
JBrowse link
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr20:28,036,909...28,064,272
Ensembl chr20:28,033,475...28,064,272
JBrowse link
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 acts_upstream_of_or_within ISO (MGI:3807344|PMID:18757743) RGD PMID:18757743 MGI:3807344 NCBI chr16:26,382,895...26,815,943
Ensembl chr16:26,383,383...26,815,205
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      cellular metabolic process 10717
        cellular macromolecule metabolic process 8204
          cellular protein metabolic process 5229
            cellular protein modification process 3614
              peptide cross-linking 36
                isopeptide cross-linking + 2
                peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                peptide cross-linking via 5-imidazolinone glycine + 0
                peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                peptide cross-linking via L-cystine 0
                peptide cross-linking via L-histidyl-L-tyrosine + 0
                peptide cross-linking via L-lysinoalanine 0
                peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                peptide cross-linking via S-glycyl-L-cysteine 0
                peptide cross-linking via an oxazole or thiazole + 0
                peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 9
                peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
Path 2
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      organic substance metabolic process 11337
        macromolecule metabolic process 9793
          protein metabolic process 5891
            protein modification process 3614
              cellular protein modification process 3614
                peptide cross-linking 36
                  isopeptide cross-linking + 2
                  peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                  peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                  peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                  peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                  peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                  peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                  peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                  peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                  peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                  peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                  peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                  peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                  peptide cross-linking via 5-imidazolinone glycine + 0
                  peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                  peptide cross-linking via L-cystine 0
                  peptide cross-linking via L-histidyl-L-tyrosine + 0
                  peptide cross-linking via L-lysinoalanine 0
                  peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                  peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                  peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                  peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                  peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                  peptide cross-linking via S-glycyl-L-cysteine 0
                  peptide cross-linking via an oxazole or thiazole + 0
                  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 9
                  peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
paths to the root