Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:snoRNA binding
go back to main search page
Accession:GO:0030515 term browser browse the term
Definition:Binding to a small nucleolar RNA.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bysl bystin like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:17,195,248...17,204,827
Ensembl chrNW_004624754:17,195,251...17,205,198 		JBrowse link
G Ddx21 DExD-box helicase 21 enables ISO (PMID:25470060) UniProt PMID:25470060 NCBI chrNW_004624754:3,180,501...3,203,449
Ensembl chrNW_004624754:3,179,662...3,203,536 		JBrowse link
G Heatr1 HEAT repeat containing 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624775:14,047,970...14,095,356
Ensembl chrNW_004624775:14,047,985...14,094,438 		JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:536,850...538,000
Ensembl chrNW_004624894:537,362...537,916 		JBrowse link
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624732:14,474,878...14,478,114
Ensembl chrNW_004624732:14,474,971...14,478,114 		JBrowse link
G LOC101709761 U8 snoRNA-decapping enzyme enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:7,380,969...7,383,694
Ensembl chrNW_004624730:7,380,972...7,384,033 		JBrowse link
G LOC101717221 U8 snoRNA-decapping enzyme-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:7,353,992...7,356,012 JBrowse link
G Nop10 NOP10 ribonucleoprotein enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624825:4,125,455...4,126,229
Ensembl chrNW_004624825:4,125,455...4,126,188 		JBrowse link
G Nop56 NOP56 ribonucleoprotein enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624741:3,803,000...3,808,439
Ensembl chrNW_004624741:3,803,169...3,808,342 		JBrowse link
G Nop58 NOP58 ribonucleoprotein enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624765:14,139,815...14,172,413 JBrowse link
G Nudt1 nudix hydrolase 1 enables ISO (PMID:21070968) UniProt PMID:21070968 NCBI chrNW_004624740:27,528,428...27,538,406
Ensembl chrNW_004624740:27,528,548...27,541,001 		JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:2,476,144...2,478,650 JBrowse link
G Nudt4 nudix hydrolase 4 enables ISO (PMID:21070968) UniProt PMID:21070968 NCBI chrNW_004624750:13,474,932...13,493,950 JBrowse link
G Nudt5 nudix hydrolase 5 enables ISO (PMID:21070968) UniProt PMID:21070968 NCBI chrNW_004624805:4,903,250...4,922,719
Ensembl chrNW_004624805:4,903,373...4,915,846 		JBrowse link
G Nudt7 nudix hydrolase 7 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:9,228,656...9,242,808
Ensembl chrNW_004624746:9,228,321...9,242,830 		JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 contributes_to ISO (PMID:17636026) BHF-UCL PMID:17636026 NCBI chrNW_004624748:9,982,754...10,028,253
Ensembl chrNW_004624748:9,981,917...10,030,411 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:5,752,201...5,761,501
Ensembl chrNW_004624730:5,747,573...5,761,456 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog enables ISO (PMID:34365507) UniProt PMID:34365507 NCBI chrNW_004624807:97,646...127,844
Ensembl chrNW_004624807:97,383...127,785 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 contributes_to ISO (PMID:17636026) BHF-UCL PMID:17636026 NCBI chrNW_004624752:6,972,557...6,985,033
Ensembl chrNW_004624752:6,972,618...6,985,033 		JBrowse link
G Utp6 UTP6 small subunit processome component enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624875:4,353,950...4,395,575
Ensembl chrNW_004624875:4,355,555...4,395,563 		JBrowse link
G Wdr3 WD repeat domain 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:13,588,392...13,626,070
Ensembl chrNW_004624772:13,588,552...13,629,071 		JBrowse link
box C/D sno(s)RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nolc1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 PMID:12446766 RGD:633420 RGD:633515 NCBI chrNW_004624831:1,613,318...1,620,592
Ensembl chrNW_004624831:1,613,234...1,620,792 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 enables ISO (PMID:11081632)
(PMID:11842104)		 GO_Central
CAFA		 PMID:11081632 PMID:11842104 NCBI chrNW_004624752:6,972,557...6,985,033
Ensembl chrNW_004624752:6,972,618...6,985,033 		JBrowse link
box H/ACA snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkc1 dyskerin pseudouridine synthase 1 enables ISO (PMID:18082603) BHF-UCL PMID:18082603 NCBI chrNW_004624963:468,673...479,317
Ensembl chrNW_004624963:469,408...479,207 		JBrowse link
G Gar1 GAR1 ribonucleoprotein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624830:94,929...102,170
Ensembl chrNW_004624830:94,090...102,155 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein enables ISO (PMID:18082603) BHF-UCL PMID:18082603 NCBI chrNW_004624733:41,371,897...41,375,360
Ensembl chrNW_004624733:41,371,897...41,375,363 		JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 PMID:12446766 RGD:633420 RGD:633515 NCBI chrNW_004624831:1,613,318...1,620,592
Ensembl chrNW_004624831:1,613,234...1,620,792 		JBrowse link
G Nop10 NOP10 ribonucleoprotein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624825:4,125,455...4,126,229
Ensembl chrNW_004624825:4,125,455...4,126,188 		JBrowse link
U3 snoRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624922:173,616...209,170
Ensembl chrNW_004624922:173,652...212,107 		JBrowse link
G Dhx37 DEAH-box helicase 37 enables ISO (PMID:30582406) UniProt PMID:30582406 NCBI chrNW_004624747:24,054,577...24,075,011
Ensembl chrNW_004624747:24,055,707...24,074,919 		JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 enables ISO (PMID:16514659) UniProt PMID:16514659 NCBI chrNW_004624768:15,949,591...15,958,816
Ensembl chrNW_004624768:15,949,470...15,960,653 		JBrowse link
G Nhp2 NHP2 ribonucleoprotein ISO RGD PMID:15044956 RGD:10766448 NCBI chrNW_004624733:41,371,897...41,375,360
Ensembl chrNW_004624733:41,371,897...41,375,363 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit enables ISO (PMID:32103174) UniProt PMID:32103174 NCBI chrNW_004624735:7,534,483...7,702,079
Ensembl chrNW_004624735:7,534,506...7,700,305 		JBrowse link
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein contributes_to
enables		 ISO
IEA		 (PMID:9418896) GO_Central
InterPro		 PMID:9418896 GO_REF:0000002 NCBI chrNW_004624730:5,752,201...5,761,501
Ensembl chrNW_004624730:5,747,573...5,761,456 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 enables ISO (PMID:11081632) GO_Central PMID:11081632 NCBI chrNW_004624752:6,972,557...6,985,033
Ensembl chrNW_004624752:6,972,618...6,985,033 		JBrowse link
G Tbl3 transducin beta like 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:282,883...289,523
Ensembl chrNW_004624913:282,887...289,407 		JBrowse link
G Tsr1 TSR1 ribosome maturation factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:4,987,893...4,998,891 JBrowse link
G Utp25 UTP25 small subunit processome component enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624807:2,069,501...2,166,859
Ensembl chrNW_004624807:2,145,963...2,166,885 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18438
    binding 16066
      nucleic acid binding 3796
        RNA binding 1631
          snoRNA binding 32
            U3 snoRNA binding 10
            box C/D sno(s)RNA binding 2
            box H/ACA snoRNA binding 5
paths to the root