Nufip1 (nuclear FMR1 interacting protein 1) - Rat Genome Database

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Gene: Nufip1 (nuclear FMR1 interacting protein 1) Heterocephalus glaber
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Symbol: Nufip1
Name: nuclear FMR1 interacting protein 1
RGD ID: 18924567
Description: ENCODES a protein that exhibits ATPase binding (ortholog); DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN fibrillar center (ortholog); nuclear matrix (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Nuclear fragile X mental retardation-interacting protein 1; NUFIP1, FMR1 interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247489,981,917 - 10,030,411 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247489,982,754 - 10,028,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Nufip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247489,981,917 - 10,030,411 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247489,982,754 - 10,028,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NUFIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381344,939,249 - 44,989,471 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1344,939,249 - 44,989,471 (-)EnsemblGRCh38hg38GRCh38
GRCh371345,513,384 - 45,563,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361344,411,384 - 44,461,571 (-)NCBINCBI36Build 36hg18NCBI36
Build 341344,411,383 - 44,461,571NCBI
Celera1326,569,484 - 26,619,733 (-)NCBICelera
Cytogenetic Map13q14.12NCBI
HuRef1326,315,238 - 26,365,485 (-)NCBIHuRef
CHM1_11345,480,925 - 45,531,156 (-)NCBICHM1_1
T2T-CHM13v2.01344,159,312 - 44,209,553 (-)NCBIT2T-CHM13v2.0
Nufip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391476,348,337 - 76,372,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1476,348,331 - 76,374,819 (+)EnsemblGRCm39 Ensembl
GRCm381476,110,891 - 76,137,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1476,110,891 - 76,137,379 (+)EnsemblGRCm38mm10GRCm38
MGSCv371476,510,698 - 76,537,186 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361474,845,046 - 74,871,534 (+)NCBIMGSCv36mm8
Celera1473,612,226 - 73,638,554 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1440.35NCBI
Nufip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81557,838,864 - 57,869,597 (+)NCBIGRCr8
mRatBN7.21551,429,518 - 51,460,308 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1551,429,549 - 51,460,310 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1555,588,438 - 55,618,547 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01556,706,754 - 56,736,867 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01553,525,162 - 53,555,991 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01558,171,163 - 58,201,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1558,170,967 - 58,201,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01561,872,647 - 61,903,369 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41557,028,109 - 57,058,834 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11557,043,888 - 57,074,614 (+)NCBI
Celera1551,055,918 - 51,086,640 (+)NCBICelera
Cytogenetic Map15q11NCBI
Nufip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555182,760,606 - 2,801,398 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555182,761,099 - 2,801,450 (-)NCBIChiLan1.0ChiLan1.0
NUFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21444,458,321 - 44,507,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11335,520,127 - 35,569,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01326,106,480 - 26,156,325 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13197,915,424 - 197,964,823 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3197,915,448 - 197,962,867 (+)Ensemblpanpan1.1panPan2
NUFIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1226,036,775 - 6,082,196 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl226,036,817 - 6,082,031 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha226,026,874 - 6,073,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0226,154,967 - 6,201,261 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl226,155,015 - 6,200,226 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1225,937,558 - 5,983,809 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0225,999,585 - 6,045,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0226,006,298 - 6,052,569 (+)NCBIUU_Cfam_GSD_1.0
Nufip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945155,174,009 - 155,218,417 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367911,094,224 - 1,138,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367911,095,583 - 1,138,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUFIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,267,481 - 22,302,707 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,267,447 - 22,302,714 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21122,570,088 - 22,605,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUFIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1323,023,976 - 23,073,154 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl323,022,207 - 23,081,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605721,044,929 - 21,099,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000006571   ⟹   ENSHGLP00000006489
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247489,981,917 - 10,030,411 (+)Ensembl
RefSeq Acc Id: XM_004844227   ⟹   XP_004844284
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247489,982,754 - 10,028,253 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844284 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18022 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006489
GenBank Protein JAO01421 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004844284   ⟸   XM_004844227
- UniProtKB: G5C911 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006489   ⟸   ENSHGLT00000006571


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004745 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006571 ENTREZGENE
InterPro NUFIP1-like UniProtKB/TrEMBL
  NUFIP1_cons_dom UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101718988 UniProtKB/TrEMBL
NCBI Gene Nufip1 ENTREZGENE
PANTHER NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  NUCLEAR FRAGILE X MENTAL RETARDATION-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam NUFIP1 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt G5C911 ENTREZGENE, UniProtKB/TrEMBL