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ONTOLOGY REPORT - ANNOTATIONS

Term:methyl-CpG binding
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Accession:GO:0008327 term browser browse the term
Definition:Binding to a methylated cytosine/guanine dinucleotide.

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methyl-CpG binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 enables ISO (PMID:28473536) UniProt PMID:28473536 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 enables ISO (PMID:28473536) UniProt PMID:28473536 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Chtop chromatin target of PRMT1 enables ISO (PMID:25284789) UniProt PMID:25284789 NCBI chrNW_004624885:3,501,468...3,511,481
Ensembl chrNW_004624885:3,501,470...3,511,451 		JBrowse link
G Cxxc4 CXXC finger protein 4 enables ISO (PMID:29276034) UniProt PMID:29276034 NCBI chrNW_004624830:4,090,207...4,116,080
Ensembl chrNW_004624830:4,092,850...4,115,959 		JBrowse link
G Cxxc5 CXXC finger protein 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:32,450,612...32,485,249
Ensembl chrNW_004624743:32,450,819...32,486,293 		JBrowse link
G Dnmt1 DNA methyltransferase 1 enables ISO (PMID:20573698) MGI PMID:20573698 NCBI chrNW_004624828:2,316,042...2,358,866
Ensembl chrNW_004624828:2,315,251...2,358,711 		JBrowse link
G Erh ERH mRNA splicing and mitosis factor enables ISO (PMID:25284789) UniProt PMID:25284789 NCBI chrNW_004624734:31,665,480...31,681,852
Ensembl chrNW_004624734:31,665,603...31,682,169 		JBrowse link
G Hoxb13 homeobox B13 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,198,805...5,201,079
Ensembl chrNW_004624795:5,198,751...5,200,961 		JBrowse link
G Lhx4 LIM homeobox 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:534,211...559,197
Ensembl chrNW_004624771:517,110...557,150 		JBrowse link
G Lrwd1 leucine rich repeats and WD repeat domain containing 1 enables ISO (PMID:21029866) UniProt PMID:21029866 NCBI chrNW_004624740:15,174,170...15,181,341
Ensembl chrNW_004624740:15,174,259...15,181,191 		JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624778:13,892,179...13,907,576
Ensembl chrNW_004624778:13,896,447...13,907,656 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 enables ISO (PMID:21029866), (PMID:24307175)
(PMID:15342650)		 UniProt
MGI		 PMID:15342650 PMID:21029866 PMID:24307175 NCBI chrNW_004624778:17,880,480...17,959,879
Ensembl chrNW_004624778:17,883,933...17,959,880 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624828:7,132,228...7,144,599
Ensembl chrNW_004624828:7,132,274...7,144,964 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 enables ISO (PMID:15342650), (PMID:17108082) RGD
MGI		 PMID:12473678 PMID:15342650 PMID:17108082 RGD:1359078 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 enables ISO (PMID:25284789) UniProt PMID:25284789 NCBI chrNW_004624832:4,593,594...4,602,514
Ensembl chrNW_004624832:4,589,743...4,602,402 		JBrowse link
G Prmt5 protein arginine methyltransferase 5 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624820:9,599,867...9,608,578
Ensembl chrNW_004624820:9,599,734...9,608,703 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 enables ISO (PMID:21496894), (PMID:27251462), (PMID:29276034) ARUK-UCL PMID:21496894 PMID:27251462 PMID:29276034 NCBI chrNW_004624754:2,846,479...2,966,845
Ensembl chrNW_004624754:2,873,456...2,965,097 		JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 enables ISO (PMID:23217707), (PMID:29276034) UniProt PMID:23217707 PMID:29276034 NCBI chrNW_004624749:29,371,674...29,494,785
Ensembl chrNW_004624749:29,371,682...29,493,031 		JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 enables ISO (PMID:15361834), (PMID:21029866) BHF-UCL PMID:15361834 PMID:21029866 NCBI chrNW_004624828:4,898,786...4,929,136
Ensembl chrNW_004624828:4,898,677...4,929,872 		JBrowse link
G Wdr77 WD repeat domain 77 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624772:7,158,530...7,167,034
Ensembl chrNW_004624772:7,158,530...7,167,042 		JBrowse link
G Zbtb21 zinc finger and BTB domain containing 21 enables ISO (PMID:21029866) UniProt PMID:21029866 NCBI chrNW_004624745:28,304,795...28,329,497
Ensembl chrNW_004624745:28,313,042...28,329,497 		JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624931:61,085...69,372
Ensembl chrNW_004624931:61,132...67,339 		JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:17,952,625...18,075,245
Ensembl chrNW_004624730:17,952,620...18,075,245 		JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 enables ISO (PMID:16354688) UniProt PMID:16354688 NCBI chrNW_004624786:10,067,503...10,085,500
Ensembl chrNW_004624786:10,066,801...10,085,482 		JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 enables ISO (PMID:32744506) UniProt PMID:32744506 NCBI chrNW_004624740:16,646,644...16,668,948
Ensembl chrNW_004624740:16,649,335...16,669,415 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16316
    binding 14651
      organic cyclic compound binding 4602
        nucleoside phosphate binding 1795
          nucleotide binding 1773
            methyl-CpG binding 25
Path 2
Term Annotations click to browse term
  molecular_function 16316
    binding 14651
      organic cyclic compound binding 4602
        nucleic acid binding 2829
          DNA binding 1797
            sequence-specific DNA binding 1206
              methyl-CpG binding 25
paths to the root