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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription factor TFIID complex
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Accession:GO:0005669 term browser browse the term
Definition:A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.

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transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr24:58,506,888...58,552,587
Ensembl chr24:58,506,537...58,551,069 		JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr26:23,850,483...23,868,477 JBrowse link
G GTF2B general transcription factor IIB part_of IEA Ensembl GO_REF:0000107 NCBI chr20:44,527,150...44,566,398
Ensembl chr20:44,527,599...44,566,424 		JBrowse link
G GTF2E1 general transcription factor IIE subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr22:60,057,393...60,094,926
Ensembl chr22:60,056,720...60,094,835 		JBrowse link
G GTF2E2 general transcription factor IIE subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 8:28,690,056...28,772,470 JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 6:5,996,585...6,006,893 JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 part_of ISO (PMID:27193682) UniProt PMID:27193682 NCBI chr 4:65,650,735...65,682,004 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:118,961,907...118,989,906
Ensembl chr11:118,967,974...118,989,391 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr17:41,550,167...41,556,538
Ensembl chr17:41,550,287...41,556,054 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 part_of IEA Ensembl GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G LOC103220275 transcription initiation factor TFIID subunit 9-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr14:53,447,973...53,449,095 JBrowse link
G LOC103221142 transcription initiation factor TFIID subunit 9 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr15:5,205,319...5,206,497 JBrowse link
G LOC103247702 transcription initiation factor TFIID subunit 11 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G LOC119623427 transcription initiation factor TFIID subunit 11 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G TAF1 TATA-box binding protein associated factor 1 part_of IEA UniProt
Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:58,213,261...58,214,658
Ensembl chr 1:58,213,310...58,214,581 		JBrowse link
G TAF11 TATA-box binding protein associated factor 11 part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr17:37,230,382...37,241,574 JBrowse link
G TAF12 TATA-box binding protein associated factor 12 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr20:104,164,912...104,199,925
Ensembl chr20:104,164,907...104,200,272 		JBrowse link
G TAF13 TATA-box binding protein associated factor 13 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:24,505,023...24,516,018
Ensembl chr20:24,463,961...24,517,642 		JBrowse link
G TAF1L TATA-box binding protein associated factor 1 like part_of IEA UniProt
TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr12:47,620,400...47,626,369 JBrowse link
G TAF1L TATA-box binding protein associated factor 1 like part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr12:47,620,634...47,626,380 JBrowse link
G TAF2 TATA-box binding protein associated factor 2 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:114,291,325...114,395,189
Ensembl chr 8:114,290,866...114,395,537 		JBrowse link
G TAF3 TATA-box binding protein associated factor 3 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:7,865,433...8,063,932
Ensembl chr 9:7,865,519...8,063,923 		JBrowse link
G TAF4 TATA-box binding protein associated factor 4 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:2,167,585...2,252,383
Ensembl chr 2:2,167,341...2,252,156 		JBrowse link
G TAF4B TATA-box binding protein associated factor 4b part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr18:54,198,730...54,357,101
Ensembl chr18:54,200,414...54,356,611 		JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of ISO (PMID:14580349), (PMID:29111974), (PMID:9045704)
(PMID:23332750)		 UniProt
ComplexPortal		 PMID:9045704 PMID:14580349 PMID:23332750 PMID:29111974 NCBI chr 9:96,411,690...96,432,668 JBrowse link
G TAF5 TATA-box binding protein associated factor 5 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 9:96,412,242...96,433,481 JBrowse link
G TAF6 TATA-box binding protein associated factor 6 part_of IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr28:12,958,555...12,971,100
Ensembl chr28:12,963,609...12,973,368 		JBrowse link
G TAF6L TATA-box binding protein associated factor 6 like part_of IEA InterPro GO_REF:0000002 NCBI chr 1:11,115,862...11,138,703
Ensembl chr 1:11,115,907...11,138,739 		JBrowse link
G TAF7 TATA-box binding protein associated factor 7 part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr23:43,938,202...43,940,486
Ensembl chr23:43,938,714...43,939,763 		JBrowse link
G TAF7L TATA-box binding protein associated factor 7 like part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:89,610,238...89,636,238
Ensembl chr  X:89,611,208...89,635,921 		JBrowse link
G TAF8 TATA-box binding protein associated factor 8 part_of ISO (PMID:14580349), (PMID:27007846), (PMID:29111974)
(PMID:23332750)		 UniProt
ComplexPortal		 PMID:14580349 PMID:23332750 PMID:27007846 PMID:29111974 NCBI chr17:30,065,086...30,105,653 JBrowse link
G TAF8 TATA-box binding protein associated factor 8 part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 Ensembl chr17:30,079,467...30,105,596 JBrowse link
G TAF9 TATA-box binding protein associated factor 9 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:65,451,038...65,455,896 JBrowse link
G TAF9B TATA-box binding protein associated factor 9b part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:67,097,313...67,106,076
Ensembl chr  X:67,099,147...67,106,262 		JBrowse link
G TBP TATA-box binding protein part_of ISO
IEA		 RGD
Ensembl		 PMID:7980586 GO_REF:0000107 RGD:2306552 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TCEA1 transcription elongation factor A1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:50,048,771...50,104,189
Ensembl chr 8:50,048,474...50,104,130 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      nucleoplasm 3668
        RNA polymerase II, holoenzyme 73
          transcription factor TFIID complex 39
            TAF4B-containing transcription factor TFIID complex 0
Path 2
Term Annotations click to browse term
  cellular_component 17898
    cellular anatomical structure 17793
      organelle 13137
        membrane-bounded organelle 11893
          intracellular membrane-bounded organelle 11359
            nucleus 7046
              nuclear protein-containing complex 1276
                nuclear DNA-directed RNA polymerase complex 97
                  RNA polymerase II, holoenzyme 73
                    transcription factor TFIID complex 39
                      TAF4B-containing transcription factor TFIID complex 0
paths to the root