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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:ovarian germ cell cancer
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Accession:DOID:2156 term browser browse the term
Definition:An ovarian cancer that originates in the germ (egg) cells of the ovary. (DO)
Synonyms:exact_synonym: EFO:1000419;   germ cell neoplasm of ovary;   germ cell tumor of ovary
 related_synonym: ovarian germ cell tumor
 primary_id: MESH:C562841
 alt_id: MIM:603737
 xref: EFO:1000419;   GARD:9330;   NCI:C3873
For additional species annotation, visit the Alliance of Genome Resources.


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ovarian germ cell cancer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbl Cbl proto-oncogene ISO ClinVar Annotator: match by term: Ovarian germ cell cancer ClinVar PMID:16199547 PMID:19571318 PMID:20694012 PMID:20955399 PMID:21901340 More... NCBI chr 8:44,487,824...44,571,620
Ensembl chr 8:44,489,410...44,571,176 		JBrowse link
G Sall4 spalt-like transcription factor 4 ISO protein:increased expression:female gonad (human) RGD PMID:19295406 RGD:11556233 NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822 		JBrowse link
malignant ovarian germ cell neoplasm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbl Cbl proto-oncogene ISO ClinVar Annotator: match by term: Malignant germ cell tumor of ovary ClinVar PMID:16199547 PMID:19571318 PMID:20694012 PMID:20955399 PMID:21901340 More... NCBI chr 8:44,487,824...44,571,620
Ensembl chr 8:44,489,410...44,571,176 		JBrowse link
G Fancm FA complementation group M ISO ClinVar Annotator: match by term: Malignant germ cell tumor of ovary ClinVar PMID:17289582 PMID:18174376 PMID:19379763 PMID:23409019 PMID:23932590 More... NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19099
    disease of anatomical entity 18440
      endocrine system disease 7029
        endocrine gland cancer 2614
          ovarian cancer 637
            ovarian germ cell cancer 3
              childhood ovarian germ cell tumor + 0
              dysgerminoma of ovary + 0
              malignant ovarian germ cell neoplasm + 2
              ovarian germ cell teratoma + 0
Path 2
Term Annotations click to browse term
  disease 19099
    disease of anatomical entity 18440
      Urogenital Diseases 5375
        Female Urogenital Diseases and Pregnancy Complications 2652
          Female Urogenital Diseases 2178
            female reproductive system disease 2175
              Adnexal Diseases 1075
                ovarian disease 1066
                  Ovarian Neoplasms 755
                    ovarian cancer 637
                      ovarian germ cell cancer 3
                        childhood ovarian germ cell tumor + 0
                        dysgerminoma of ovary + 0
                        malignant ovarian germ cell neoplasm + 2
                        ovarian germ cell teratoma + 0
paths to the root