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dimethylindole red - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.

Term:dimethylindole red
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Accession:CHEBI:72811 term browser browse the term
Definition:A fluorogenic cyanine dye in which N-(3-sulfopropyl)quinolinium is linked to a 1,3,3-trimethyldihydroindole via a propan-1-yl-3-ylidene chain to form a conjugated system.
Synonyms:exact_synonym: 3-{4-[(1E,3E)-3-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)prop-1-en-1-yl]quinolinium-1-yl}propane-1-sulfonate
 related_synonym: 1-(3-sulfopropyl)-4-[(1E,3E)-3-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)prop-1-en-1-yl]quinolinium;   DIR;   Formula=C26H28N2O3S;   InChI=1S/C26H28N2O3S/c1-26(2)22-12-5-7-14-24(22)27(3)25(26)15-8-10-20-16-18-28(17-9-19-32(29,30)31)23-13-6-4-11-21(20)23/h4-8,10-16,18H,9,17,19H2,1-3H3;   InChIKey=NTABMUJQZABQGD-UHFFFAOYSA-N;   SMILES=CN1c2ccccc2C(C)(C)\\C1=C/C=C/c1cc[n+](CCCS([O-])(=O)=O)c2ccccc12
 xref: PDBeChem:DIW;   PMID:22390683;   Reaxys:18882060


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  CHEBI ontology 5152
    role 5119
      application 905
        dye 3
          cyanine dye 0
            dimethylindole red 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 5152
    subatomic particle 5143
      composite particle 5143
        hadron 5143
          baryon 5143
            nucleon 5143
              atomic nucleus 5143
                atom 5143
                  main group element atom 5116
                    main group molecular entity 5115
                      s-block molecular entity 5048
                        hydrogen molecular entity 5041
                          hydrides 4662
                            inorganic hydride 426
                              pnictogen hydride 422
                                nitrogen hydride 422
                                  ammonium 49
                                    ammonium ion derivative 49
                                      ammonium compound 7
                                        organoammonium salt 5
                                          quaternary ammonium salt 0
                                            dimethylindole red 0
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