Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Ontology Browser
Term:
Parent Terms Term With Siblings Child Terms
cyanine dye +     
fluorescent dye +   
quaternary ammonium salt +     
zwitterion +     
(11)C-choline chloride 
(1R,2S,1'R,2'S)-doxacurium chloride +  
(1S,2R,1'S,2'R)-doxacurium chloride +  
(2-amino-1-hydroxyethyl)phosphonate zwitterion +  
(2-aminoethyl)phosphonic acid zwitterion 
(2R,3S,11R)-acetylaszonalenin zwitterion 
(2R,3S,11R)-aszonalenin zwitterion +  
(2R,3S,11R)-N-acetyl-aszonalenin zwitterion 
(2R,3S,11S)-aszonalenin zwitterion 
(2S)-2-ammonio-3-(2-acetamidoethoxy)propanoate 
(2S)-2-ammonio-6-[(2S)-2-ammonio-4-carboxylato-N-hydroxybutanamido]hexanoate 
(2S,3R,11R)-aszonalenin zwitterion 
(2S,3R,11S)-aszonalenin zwitterion 
(3-aminopropyl)phosphonic acid zwitterion 
(3R)-3,4-dimethyl-2-oxopentanoate 
(4S,5R)-4,5,6-trihydroxy-2-iminohexanoic acid zwitterion 
(beta-Asp-Arg)n zwitterion 
(E)-3-diazocoumarate 
(E,E)-1-bromo-2,5-bis-(4-hydroxystyryl)benzene 
(R)-oleoylcarnitine hydrochloride 
(R)-salsolinol-1-carboxylate zwitterion 
1,1',3,3'-tetraethyl-5,5',6,6'-tetrachloroimidacarbocyanine +  
1,1',3,3'-tetraethyl-5,5',6,6'-tetrachloroimidacarbocyanine iodide 
1,1'-diethyl-2,2'-cyanine halide +  
1,1'-hexadecane-1,16-diylbis(1-methylpyrrolidinium) dibromide 
1,1-dimethyl-4-phenylpiperazinium iodide  
1,2-diacyl-sn-glycero-3-phospho-N,N-dimethylethanolamine zwitterion +  
1,2-diacyl-sn-glycero-3-phospho-N-methylethanolamine zwitterion +  
1-piperideine-2-carboxylic acid zwitterion 
1-pyrroline-2-carboxylic acid zwitterion 
10-carboxy-13-deoxycarminomycin zwitterion 
10-carboxy-13-deoxydaunorubicin zwitterion 
11-deoxy-beta-rhodomycin zwitterion 
11a-hydroxychlortetracycline zwitterion 
11a-hydroxytetracycline zwitterion 
12-dehydrotetracycline zwitterion 
12-ketomethymycin N-oxide 
15-demethylaclacinomycin T zwitterion 
1D-3-amino-1-guanidino-1,3-dideoxy-scyllo-inositol 6-phosphate dizwitterion 
2,4-D choline 
2,5-diiminio-3,4-bis(indol-3-yl)hexanedioate 
2-(4-dimethylaminostyryl)-1-ethylpyridinium iodide 
2-(\{2-[Dimethyl(2-phosphanylethyl)ammonio]ethyl\}dimethylammonio)ethyl phosphinite 
2-(N-morpholiniumyl)ethanesulfonate 
2-(trimethylamino)-vinylphosphonate zwitterion 
2-ammonioethyl (2R)-2,3-dihydroxypropyl phosphate zwitterion 
2-deoxy-alpha-L-fucosylaclacinomycin S zwitterion 
2-iminio-3-(7-chloroindol-3-yl)propionate 
2-iminio-3-(indol-3-yl)propanoate 
2-iminiopropionate 
2-iminobutanoic acid zwitterion 
3,3'-dipentyloxacarbocyanine 
3,4-bis(7-chloroindol-3-yl)-2,5-diiminiohexanedioate 
3-aminopropanesulfonic acid zwitterion 
3-diazo-4-hydroxybenzoate 
3-diazoavenalumate 
3-guanidinopropane sulfonic acid zwitterion 
3-guanidinopropanoic acid zwitterion 
3-methoxytyramine sulfate zwitterion 
3-nitrotyramine zwitterion 
3-O-L-alanyl-1-O-phosphatidylglycerol zwitterion +  
4-(4-dimethylaminostyryl)-1-ethylpyridinium iodide 
4-amino-4-de(dimethylamino)anhydrotetracycline zwitterion 
4-amino-4-deoxy-alpha-L-arabinopyranosyl ditrans,polycis-undecaprenyl phosphate zwitterion 
4-azaniumyl-4-deoxy-alpha-L-arabinopyranosyl undecaprenyl phosphate 
4-DAMP methiodide  
4-guanidinobutanoic acid zwitterion 
5(6)-carboxyfluorescein 
5-[(2-aminobenzimidazol-6-yl)amino]-5-oxopentanoic acid zwitterion 
5-deoxy-5-aminoshikimic acid zwitterion 
5-guanidino-2-oxopentanoic acid zwitterion 
5-guanidino-3-methyl-2-oxopentanoic acid zwitterion +  
5-S-cysteinyldopa zwitterion 
5-S-cysteinyldopaquinone zwitterion 
5a,11a-dehydrooxytetracycline zwitterion 
6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol zwitterion +  
6-(alpha-D-glucosaminyl)-1D-myo-inositol 1,2-cyclic phosphate zwitterion 
7-diethylamino-3-(4-maleimidophenyl)-4-methylcoumarin 
7-epi-cylindrospermopsin zwitterion 
9-aminoacridine  
a 2-iminiocarboxylate +  
acetyl-beta-methylthiocholine iodide 
acetylcholine bromide 
acetylcholine chloride 
aclacinomycin A zwitterion 
aclacinomycin N zwitterion 
aclacinomycin S zwitterion 
aclacinomycin T zwitterion 
aclacinomycin Y zwitterion 
aclidinium bromide 
Alexa Fluor 633 
Alexa Fluor 647 
alkyl,acyl-sn-glycero-3-phosphoethanolamine zwitterion +  
alpha-D-galactosamine 1-phosphate zwitterion 
alstonine 
ambenonium chloride  
amidinoproclavaminic acid zwitterion 
amino acid zwitterion +   
an 11a-hydroxytetracyline zwitterion +  
anhydrotetracycline zwitterion 
anisotropine methylbromide 
anserine zwitterion 
Arachidonyl carnitine 
atracurium besylate +  
bacitracin A zwitterion 
benzalkonium chloride  
benzethonium chloride  
benzododecinium bromide 
benzododecinium chloride 
beta-alanyl-5'-AMP zwitterion 
Betaine Aldehyde Chloride 
bethanechol chloride +  
bisucaberin B zwitterion 
BoBo-1 
BoBo-1(4+) +  
BoBo-3 
BoBo-3(4+) +  
boromycin 
bretylium tosylate  
butropium bromide 
butylscopolamine bromide  
C3-indocyanine 
C3-indocyanine cation +  
C3-oxacyanine 
C3-oxacyanine cation +  
C3-thiacarbocyanine 
C3-thiacarbocyanine cation +   
C5-oxacyanine 
C5-oxacyanine cation +  
C7-indocyanine +  
C7-indocyanine cation +  
C7-oxacyanine 
C7-oxacyanine cation +  
carbocyanin DBTC 
carbocyanin DBTC(1+) +  
carpronium chloride 
ceramide phosphoethanolamine zwitterion +  
cetyltrimethylammonium bromide 
cetyltrimethylammonium chloride 
chlormequat chloride  
choline chloride 
ciprofloxacin zwitterion 
cisatracurium besylate 
clidinium bromide 
colesevelam +   
coumarin +   
creatine zwitterion 
Cy2 dye 
Cy3 dye +  
Cy3B dye NHS ester 
Cy5 dye +  
Cy7 dye 
cyanine conjugate +  
cylindrospermopsin zwitterion 
CypHer5 
D-alanyl-(R)-lactic acid zwitterion 
D-alanyl-AMP zwitterion 
D-cycloserine zwitterion 
decamethoxine 
decyltrimethylammonium bromide 
dehydroglycine zwitterion 
demecarium bromide 
deoxyamidinoproclavaminic acid zwitterion 
deoxycylindrospermopsin zwitterion 
desmethylanhydrotetracycline zwitterion 
Didecyldimethylammonium  
diIC18(7)(1+) +  
dimethylindole red 
A fluorogenic cyanine dye in which N-(3-sulfopropyl)quinolinium is linked to a 1,3,3-trimethyldihydroindole via a propan-1-yl-3-ylidene chain to form a conjugated system.
Dioctyldimethylammonium chloride 
diphemanil methylsulfate 
Diponium bromide 
dodecyltrimethylammonium bromide 
dopamine 3-O-sulfate zwitterion 
dopamine 4-O-sulfate zwitterion 
DOSPA trifluoroacetate 
doxacurium chloride 
E64 zwitterion 
ecothiopate iodide  
ectoine zwitterion 
edrophonium chloride 
eosin b 
erythrosin 
erythrosin B  
ethyl green 
ethyltrimethylammonium iodide 
fluorescein (acid form) +   
fluorescein (lactone form) +   
fluorescein isothiocyanate +   
fluorochrome +   
fluoromethylcholine (18F) 
FM 1-43 dye 
FM 4-64 dye 
fragin zwitterion 
fumisoquin B zwitterion 
FUN-1 
gentamycin 2''-phosphate dizwitterion 
glycerophosphoethanolamine zwitterion +  
glycopyrronium bromide +  
glycyl-AMP zwitterion 
guanidinoacetic acid zwitterion 
guanidinoethyl methyl phosphate zwitterion 
heparosan D-glucuronic acid zwitterion +  
heparosan L-iduronic acid zwitterion 
Heptadecyl(hexadecyl)dimethylazanium 
hexafluronium 
Hexamethonium  
hypotaurine zwitterion 
hypotaurocyamine zwitterion 
imipenem zwitterion 
indocyanine green  
iodine green 
ipratropium chloride 
JTE-607 zwitterion 
kainate lactone zwitterion 
L-alanyl-AMP zwitterion 
L-cysteinyl-AMP zwitterion 
L-isoleucyl-AMP zwitterion 
L-pipecolic acid zwitterion 
L-thiazolidine-2-carboxylic acid zwitterion 
loracarbef zwitterion 
lysidine zwitterion 
lysophosphatidylethanolamine zwitterion +  
mepiquat chloride 
meso-doxacurium chloride +  
methacholine chloride  
methyl green 
methyldehydrofosmidomycin zwitterion 
methyltrioctylammonium chloride  
minocycline zwitterion 
mitoTracker Green FM  
molsidomine  
muraymycin D2 zwitterion 
Muscaridin 
N(pros)-methyl-L-histidine zwitterion 
N(tele)-methyl-L-histidine zwitterion 
N,N,N-Trimethylethenaminium 
N-(1-deoxy-beta-D-fructopyranos-1-yl)-L-6-aminohexanoate zwitterion 
N-(3-carboxypropanoyl)-N-hydroxycadaverine zwitterion 
N-(3-carboxypropanoyl)-N-hydroxyputrescine zwitterion 
N-(3-O-phospho-D-erythrulosyl)-cadaverine 
N-(3-O-phospho-D-ribulosyl)-cadaverine 
N-[(2S)-2-ammoniobutanoyl]glycinate 
N-citryl-spermidine zwitterion 
N-formimidoylglycine zwitterion 
Nervonyl carnitine 
NIR-1 dye 
NIR-1(2-) +  
NIR-2 dye 
NIR-2(2-) +  
NIR-3 dye 
NIR-3(2-) +  
NIR-4 dye 
NIR-4(2-) +  
NIR-820 dye 
O-(1->4)-alpha-L-dihydrostreptosylstreptidine 6-phosphate zwitterion 
O-glutamyl-N(6)-hydroxy-L-lysine zwitterion 
octyltrimethylammonium bromide 
omocianine 
onium betaine +   
oxytetracycline zwitterion 
PABA/NO 
penotonium bromide 
pentamethonium bromide 
peptide zwitterion +  
phaclofen zwitterion 
phloxine O  
phosphatidyl-N,N-dimethylethanolamine zwitterion 
phosphatidyl-N-methylethanolamine zwitterion 
PicoGreen 
pinacyanol cation +  
pinacyanol iodide 
Po-Pro-1 
Po-Pro-1(2+) +  
Po-Pro-3 
Po-Pro-3(2+) +  
Polidronium chloride 
Polixetonium chloride 
poly(2-methacrylolyloxyethyltrimethylammonium chloride) macromolecule +  
poly(diallyldimethylammonium chloride) macromolecule +  
poly[3-(3'-N,N,N-triethylamino-1-propyloxy)-4-methylthiophene-2,5-diyl hydrochloride] macromolecule +  
PoPo-1 
PoPo-1(4+) +  
PoPo-3 
PoPo-3(4+) +  
pre-putrebactin zwitterion 
prenyl-FMN 
propyromazine bromide 
psychosine sulfate zwitterion 
quaternium-15 
quaternium-52 
rezafungin acetate 
rifampicin zwitterion +  
rocuronium bromide 
S-(2-acetamidoethyl)-homocysteine zwitterion 
S-(acetaldehyde)-L-cysteine zwitterion 
S-methylglutathione zwitterion 
scopolamine methobromide 
serpentine  
sn-glycero-3-phosphoethanolamine zwitterion 
SNIR1 dye 
SNIR1(1-) +  
SNIR2 dye 
SNIR2(1-) +  
SNIR3 dye 
SNIR4 dye 
SNIR4(2-) +  
sodium green 
squaraine dye +  
streptidine 6-phosphate zwitterion 
SYBR Green I 
taurine zwitterion 
taurocyamine zwitterion 
tetrabutylammonium salt +  
tetracycline zwitterion 
tetraethylammonium chloride 
tetramethylammonium bromide 
tetrapropylammonium bromide 
tetrapropylammonium perruthenate 
thiazole orange 
thiazole orange cation +  
tiotropium bromide  
tiquizium bromide  
To-Pro-1 
To-Pro-1(2+) +  
To-Pro-3 
To-Pro-3(2+) +  
ToTo-1 
ToTo-1(4+) +  
ToTo-3 
ToTo-3(4+) +  
Trimethylcetylammonium pentachlorophenate 
trimethylphenylammonium hydroxide 
trospium chloride  
tyramine sulfate zwitterion 
umeclidinium bromide +  
vecuronium bromide  
Yo-Pro-1 
Yo-Pro-1(2+) +  
Yo-Pro-3 
Yo-Pro-3(2+) +  
YoYo-1 
YoYo-1(4+) +  
YoYo-3 
YoYo-3(4+) +  
Zwitterionic polysialic acid acetylated at O-9 

Synonyms
Exact Synonyms: 3-{4-[(1E,3E)-3-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)prop-1-en-1-yl]quinolinium-1-yl}propane-1-sulfonate
Related Synonyms: 1-(3-sulfopropyl)-4-[(1E,3E)-3-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)prop-1-en-1-yl]quinolinium ;   DIR ;   Formula=C26H28N2O3S ;   InChI=1S/C26H28N2O3S/c1-26(2)22-12-5-7-14-24(22)27(3)25(26)15-8-10-20-16-18-28(17-9-19-32(29,30)31)23-13-6-4-11-21(20)23/h4-8,10-16,18H,9,17,19H2,1-3H3 ;   InChIKey=NTABMUJQZABQGD-UHFFFAOYSA-N ;   SMILES=CN1c2ccccc2C(C)(C)\\C1=C/C=C/c1cc[n+](CCCS([O-])(=O)=O)c2ccccc12
Xrefs: PDBeChem:DIW ;   PMID:22390683 ;   Reaxys:18882060

paths to the root