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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:4-pyridoxic acid
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Accession:CHEBI:17405 term browser browse the term
Definition:A methylpyridine that is 2-methylpyridine substituted by a hydroxy group at C-3, a carboxy group at C-4, and a hydroxymethyl group at C-5. It is the catabolic product of vitamin B6 and is excreted in the urine.
Synonyms:related_synonym: 2-methyl-3-hydroxy-4-carboxy-5-hydroxymethylpyridine;   3-hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinecarboxylic acid;   3-hydroxy-5-(hydroxymethyl)-2-methylisonicotinic acid;   3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carboxylic acid;   4-Pyridoxinsaeure;   4-pyridoxinecarboxylic acid;   4-pyridoxinic acid;   4-pyridoxylic acid;   Formula=C8H9NO4;   InChI=1S/C8H9NO4/c1-4-7(11)6(8(12)13)5(3-10)2-9-4/h2,10-11H,3H2,1H3,(H,12,13);   InChIKey=HXACOUQIXZGNBF-UHFFFAOYSA-N;   SMILES=Cc1ncc(CO)c(C(O)=O)c1O;   pyridoxic acid
 alt_id: CHEBI:1928;   CHEBI:20474
 xref: Beilstein:384006;   CAS:82-82-6;   Chemspider:6467;   FooDB:FDB021874;   HMDB:HMDB0000017;   KEGG:C00847;   KNApSAcK:C00052160
 xref_mesh: MESH:D011735
 xref: MetaCyc:CPD-1112;   PMID:11756060;   PMID:1462525;   PMID:14747687;   PMID:1783639;   PMID:17868768;   PMID:22770225;   PMID:23535534;   PMID:2580028;   PMID:28778380;   PMID:30845778;   PMID:32346589;   PMID:8505768;   Reaxys:384006
 cyclic_relationship: is_conjugate_acid_of CHEBI:30959


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4-pyridoxic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain multiple interactions EXP [COL2A1 protein co-treated with Freund's Adjuvant] results in decreased abundance of Pyridoxic Acid CTD PMID:24709313 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19808
    role 19784
      biological role 19782
        biochemical role 19496
          vitamin (role) 14021
            water-soluble vitamin (role) 9699
              B vitamin 9490
                vitamin B6 34
                  4-pyridoxic acid 1
                    4-pyridoxolactone 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19808
    subatomic particle 19806
      composite particle 19806
        hadron 19806
          baryon 19806
            nucleon 19806
              atomic nucleus 19806
                atom 19806
                  main group element atom 19756
                    p-block element atom 19756
                      carbon group element atom 19705
                        carbon atom 19702
                          organic molecular entity 19702
                            heteroorganic entity 19460
                              organochalcogen compound 19224
                                organooxygen compound 19141
                                  carbon oxoacid 18612
                                    carboxylic acid 18609
                                      monocarboxylic acid 17984
                                        pyridinemonocarboxylic acid 418
                                          isonicotinic acid 174
                                            4-pyridoxic acid 1
                                              4-pyridoxolactone 0
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