RGD1311745 (similar to RIKEN cDNA 1110059G10) - Rat Genome Database

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Gene: RGD1311745 (similar to RIKEN cDNA 1110059G10) Rattus norvegicus
Analyze
Symbol: RGD1311745
Name: similar to RIKEN cDNA 1110059G10
RGD ID: 1311745
Description: Orthologous to human KIAA1143 (KIAA1143); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC301079; LOC301079; MGC94788; uncharacterized protein KIAA1143 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,475,903 - 131,486,619 (-)NCBIGRCr8
mRatBN7.28122,598,363 - 122,609,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,598,401 - 122,609,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,187,782 - 128,191,135 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,386,729 - 126,390,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,215,104 - 124,218,449 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,029,618 - 132,032,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,029,621 - 132,036,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,184,118 - 131,187,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,690,773 - 127,694,126 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,710,510 - 127,713,863 (-)NCBI
Celera8121,712,553 - 121,715,906 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
RGD1311745
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,475,903 - 131,486,619 (-)NCBIGRCr8
mRatBN7.28122,598,363 - 122,609,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,598,401 - 122,609,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8128,187,782 - 128,191,135 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,386,729 - 126,390,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08124,215,104 - 124,218,449 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08132,029,618 - 132,032,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,029,621 - 132,036,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,184,118 - 131,187,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,690,773 - 127,694,126 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,710,510 - 127,713,863 (-)NCBI
Celera8121,712,553 - 121,715,906 (-)NCBICelera
Cytogenetic Map8q32NCBI
KIAA1143
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38344,748,744 - 44,761,619 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl344,737,661 - 44,761,619 (-)EnsemblGRCh38hg38GRCh38
GRCh37344,790,236 - 44,803,111 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,769,530 - 44,778,158 (-)NCBINCBI36Build 36hg18NCBI36
Celera344,728,223 - 44,741,161 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef344,834,427 - 44,847,369 (-)NCBIHuRef
CHM1_1344,740,275 - 44,753,212 (-)NCBICHM1_1
T2T-CHM13v2.0344,764,418 - 44,777,307 (-)NCBIT2T-CHM13v2.0
1110059G10Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,774,154 - 122,780,065 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,774,154 - 122,780,065 (-)EnsemblGRCm39 Ensembl
GRCm389122,945,089 - 122,951,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,945,089 - 122,951,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv379122,854,207 - 122,860,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,793,787 - 122,799,670 (-)NCBIMGSCv36mm8
Celera9123,398,326 - 123,404,236 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.3NCBI
Kiaa1143
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,827,692 - 26,831,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,827,888 - 26,831,967 (+)NCBIChiLan1.0ChiLan1.0
KIAA1143
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2244,700,452 - 44,713,843 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1344,705,218 - 44,718,609 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0344,643,795 - 44,656,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1345,701,152 - 45,713,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,701,152 - 45,713,960 (-)Ensemblpanpan1.1panPan2
KIAA1143
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12043,532,404 - 43,538,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2043,532,413 - 43,538,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2043,447,990 - 43,454,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02044,017,370 - 44,023,843 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2044,017,437 - 44,025,423 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12043,255,752 - 43,262,077 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02043,663,351 - 43,669,994 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02043,940,819 - 43,947,053 (+)NCBIUU_Cfam_GSD_1.0
Kiaa1143
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118198,567,198 - 198,574,832 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936695919,488 - 927,269 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936695919,546 - 927,167 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1143
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1327,958,878 - 27,966,533 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11327,959,639 - 27,966,531 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21330,802,952 - 30,809,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA1143
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1226,230,074 - 6,238,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl226,226,046 - 6,238,710 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041160,935,023 - 160,946,124 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kiaa1143
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473075,706,890 - 75,711,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473075,707,204 - 75,718,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RGD1311745
28 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:153
Interacting mature miRNAs:165
Transcripts:ENSRNOT00000005502
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat

Markers in Region
RH128780  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,599,181 - 122,599,376 (+)MAPPERmRatBN7.2
Rnor_6.08132,030,356 - 132,030,550NCBIRnor6.0
Rnor_5.08131,184,856 - 131,185,050UniSTSRnor5.0
RGSC_v3.48127,691,511 - 127,691,705UniSTSRGSC3.4
Celera8121,713,291 - 121,713,485UniSTS
RH 3.4 Map81276.7UniSTS
Cytogenetic Map8q32UniSTS
RH138250  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,601,359 - 122,601,494 (+)MAPPERmRatBN7.2
Rnor_6.08132,032,534 - 132,032,668NCBIRnor6.0
Rnor_5.08131,187,034 - 131,187,168UniSTSRnor5.0
RGSC_v3.48127,693,689 - 127,693,823UniSTSRGSC3.4
Celera8121,715,469 - 121,715,603UniSTS
RH 3.4 Map81275.9UniSTS
Cytogenetic Map8q32UniSTS
RH139081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,602,643 - 122,602,772 (+)MAPPERmRatBN7.2
Rnor_6.08132,033,818 - 132,033,946NCBIRnor6.0
Rnor_5.08131,188,319 - 131,188,447UniSTSRnor5.0
RGSC_v3.48127,694,974 - 127,695,102UniSTSRGSC3.4
Celera8121,716,752 - 121,716,880UniSTS
RH 3.4 Map81275.3UniSTS
Cytogenetic Map8q32UniSTS
RH47807  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28122,598,822 - 122,599,587 (+)MAPPERmRatBN7.2
Rnor_6.08132,029,997 - 132,030,761NCBIRnor6.0
Rnor_5.08131,184,497 - 131,185,261UniSTSRnor5.0
RGSC_v3.48127,691,152 - 127,691,916UniSTSRGSC3.4
Celera8121,712,932 - 121,713,696UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 32 43 31 19 31 74 35 41 11
Low 11 14 10 10 8 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005502   ⟹   ENSRNOP00000005502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8122,598,401 - 122,609,168 (-)Ensembl
Rnor_6.0 Ensembl8132,029,621 - 132,032,971 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087493   ⟹   ENSRNOP00000071409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8122,598,401 - 122,609,168 (-)Ensembl
Rnor_6.0 Ensembl8132,029,623 - 132,036,472 (-)Ensembl
RefSeq Acc Id: NM_001008329   ⟹   NP_001008330
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,475,905 - 131,479,258 (-)NCBI
mRatBN7.28122,598,444 - 122,601,797 (-)NCBI
Rnor_6.08132,029,618 - 132,032,971 (-)NCBI
Rnor_5.08131,184,118 - 131,187,471 (-)NCBI
RGSC_v3.48127,690,773 - 127,694,126 (-)RGD
Celera8121,712,553 - 121,715,906 (-)RGD
Sequence:
RefSeq Acc Id: XM_039081310   ⟹   XP_038937238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,475,903 - 131,486,619 (-)NCBI
mRatBN7.28122,598,363 - 122,609,127 (-)NCBI
RefSeq Acc Id: XM_063265309   ⟹   XP_063121379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,475,903 - 131,486,613 (-)NCBI
RefSeq Acc Id: XM_063265310   ⟹   XP_063121380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,475,903 - 131,486,613 (-)NCBI
RefSeq Acc Id: XM_063265311   ⟹   XP_063121381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88131,475,903 - 131,486,613 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001008330   ⟸   NM_001008329
- UniProtKB: Q5RKH3 (UniProtKB/Swiss-Prot),   A6I494 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071409   ⟸   ENSRNOT00000087493
RefSeq Acc Id: ENSRNOP00000005502   ⟸   ENSRNOT00000005502
RefSeq Acc Id: XP_038937238   ⟸   XM_039081310
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K0E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121380   ⟸   XM_063265310
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q233 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121381   ⟸   XM_063265311
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q233 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121379   ⟸   XM_063265309
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q233 (UniProtKB/TrEMBL)
Protein Domains
DUF4604

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RKH3-F1-model_v2 AlphaFold Q5RKH3 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696401
Promoter ID:EPDNEW_R6926
Type:initiation region
Name:RGD1311745_1
Description:similar to RIKEN cDNA 1110059G10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08132,032,980 - 132,033,040EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311745 AgrOrtholog
BioCyc Gene G2FUF-28626 BioCyc
Ensembl Genes ENSRNOG00000004135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005502 ENTREZGENE
  ENSRNOT00000005502.7 UniProtKB/TrEMBL
  ENSRNOT00000087493.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7106823 IMAGE-MGC_LOAD
InterPro DUF4604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIAA1143-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:301079 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94788 IMAGE-MGC_LOAD
NCBI Gene 301079 ENTREZGENE
PANTHER PTHR31195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZGC:77056 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen RGD1311745 PhenoGen
RatGTEx ENSRNOG00000004135 RatGTEx
UniProt A0A0G2K0E2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q233 ENTREZGENE, UniProtKB/TrEMBL
  A6I493_RAT UniProtKB/TrEMBL
  A6I494 ENTREZGENE, UniProtKB/TrEMBL
  K1143_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 RGD1311745  similar to RIKEN cDNA 1110059G10  RGD1311745_predicted  similar to RIKEN cDNA 1110059G10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311745_predicted  similar to RIKEN cDNA 1110059G10 (predicted)  LOC301079_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC301079_predicted  similar to RIKEN cDNA 1110059G10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL