1110059G10Rik (RIKEN cDNA 1110059G10 gene) - Rat Genome Database
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Gene: 1110059G10Rik (RIKEN cDNA 1110059G10 gene) Mus musculus
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Symbol: 1110059G10Rik
Name: RIKEN cDNA 1110059G10 gene
RGD ID: 1323361
MGI Page MGI
Description: Orthologous to human KIAA1143 (KIAA1143); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); 3-chloropropane-1,2-diol (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical protein LOC66202; uncharacterized protein KIAA1143 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,774,154 - 122,780,065 (-)NCBIGRCm39mm39
GRCm389122,945,089 - 122,951,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,945,089 - 122,951,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv379122,854,207 - 122,860,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv369122,793,787 - 122,799,670 (-)NCBImm8
Celera9123,398,326 - 123,404,236 (-)NCBICelera
Cytogenetic Map9F4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. RGD automated import pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15345747   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:21267068   PMID:21677750  


Genomics

Comparative Map Data
1110059G10Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,774,154 - 122,780,065 (-)NCBIGRCm39mm39
GRCm389122,945,089 - 122,951,000 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,945,089 - 122,951,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv379122,854,207 - 122,860,118 (-)NCBIGRCm37mm9NCBIm37
MGSCv369122,793,787 - 122,799,670 (-)NCBImm8
Celera9123,398,326 - 123,404,236 (-)NCBICelera
Cytogenetic Map9F4NCBI
KIAA1143
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl344,737,661 - 44,761,619 (-)EnsemblGRCh38hg38GRCh38
GRCh38344,748,744 - 44,761,619 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37344,790,236 - 44,803,173 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,769,530 - 44,778,158 (-)NCBINCBI36hg18NCBI36
Celera344,728,223 - 44,741,161 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef344,834,427 - 44,847,369 (-)NCBIHuRef
CHM1_1344,740,275 - 44,753,212 (-)NCBICHM1_1
RGD1311745
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08132,029,618 - 132,032,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8132,029,621 - 132,036,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08131,184,118 - 131,187,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,690,773 - 127,694,126 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18127,710,510 - 127,713,863 (-)NCBI
Celera8121,712,553 - 121,715,906 (-)NCBICelera
Cytogenetic Map8q32NCBI
Kiaa1143
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542026,827,692 - 26,831,967 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542026,827,888 - 26,831,967 (+)NCBIChiLan1.0ChiLan1.0
KIAA1143
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1345,701,152 - 45,713,960 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,701,152 - 45,713,960 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0344,643,795 - 44,656,710 (-)NCBIMhudiblu_PPA_v0panPan3
KIAA1143
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2043,532,413 - 43,538,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12043,532,404 - 43,538,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kiaa1143
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936695919,546 - 927,167 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1143
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1327,958,876 - 27,967,183 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11327,959,639 - 27,966,531 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21330,802,952 - 30,809,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA1143
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl226,226,046 - 6,238,710 (-)Ensembl
ChlSab1.1226,230,074 - 6,238,707 (-)NCBI
Kiaa1143
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473075,707,204 - 75,718,130 (+)NCBI

Position Markers
RH47807  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389122,948,001 - 122,948,950UniSTSGRCm38
MGSCv379122,857,119 - 122,858,068UniSTSGRCm37
Celera9123,401,238 - 123,402,186UniSTS
Cytogenetic Map9F4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1236
Count of miRNA genes:601
Interacting mature miRNAs:746
Transcripts:ENSMUST00000035154, ENSMUST00000118422
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000035154   ⟹   ENSMUSP00000035154
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,945,089 - 122,951,000 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118422   ⟹   ENSMUSP00000112461
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,947,535 - 122,950,953 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215129
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9122,948,427 - 122,950,976 (-)Ensembl
RefSeq Acc Id: NM_025419   ⟹   NP_079695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399122,774,154 - 122,780,065 (-)NCBI
GRCm389122,945,089 - 122,951,000 (-)ENTREZGENE
MGSCv379122,854,207 - 122,860,118 (-)RGD
Celera9123,398,326 - 123,404,236 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079695   ⟸   NM_025419
- UniProtKB: Q8K039 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000112461   ⟸   ENSMUST00000118422
RefSeq Acc Id: ENSMUSP00000035154   ⟸   ENSMUST00000035154
Protein Domains
DUF4604

Promoters
RGD ID:6843928
Promoter ID:MM_KWN:59255
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000040717,   ENSMUST00000093767,   NM_025419,   UC009SFK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369122,859,829 - 122,860,329 (-)MPROMDB
RGD ID:8671318
Promoter ID:EPDNEW_M13689
Type:initiation region
Name:1110059G10Rik_1
Description:Mus musculus RIKEN cDNA 1110059G10 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389122,950,972 - 122,951,032EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913452 AgrOrtholog
Ensembl Genes ENSMUSG00000032551 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035154 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112461 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035154 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000118422 UniProtKB/TrEMBL
InterPro DUF4604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KIAA1143-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66202 UniProtKB/Swiss-Prot
MGD MGI:1913452 ENTREZGENE
NCBI Gene 66202 ENTREZGENE
PANTHER PTHR31195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 1110059G10Rik PhenoGen
UniGene Mm.268307 ENTREZGENE
UniProt D3YWR8_MOUSE UniProtKB/TrEMBL
  K1143_MOUSE UniProtKB/Swiss-Prot
  Q571N2_MOUSE UniProtKB/TrEMBL
  Q8K039 ENTREZGENE
UniProt Secondary Q9CSR4 UniProtKB/Swiss-Prot
  Q9D0W8 UniProtKB/Swiss-Prot