D5Rat147 Marker Search Result - Rat Genome Database

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Marker: D5Rat147

Symbol: D5Rat147
Previously known as: oxsts11047; R0223-D09; 
RGD ID: 41318
Expected Size: 133 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2582,394,392 - 82,394,565 (+)MAPPERmRatBN7.2
Rnor_6.0584,963,058 - 84,963,230NCBIRnor6.0
Rnor_5.0589,056,339 - 89,056,511UniSTSRnor5.0
RGSC_v3.4586,116,638 - 86,116,811RGDRGSC3.4
RGSC_v3.4586,116,639 - 86,116,811UniSTSRGSC3.4
Celera581,226,931 - 81,227,156UniSTS
RGSC_v3.1586,121,751 - 86,121,924RGD
SHRSP x BN Map548.0099RGD
SHRSP x BN Map548.0099UniSTS
Cytogenetic Map5q31UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Scl20  
Genes:   Brinp1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AAGCACCTTAAAAACAAGAGTTGA
Reverse Primer TTACTGGCACAGGCAGACAG
 

Region

Nucleotide Sequences
GenBank Nucleotide CH473978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 140610 UniSTS
  544411 UniSTS