Brinp1 (BMP/retinoic acid inducible neural specific 1) - Rat Genome Database

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Gene: Brinp1 (BMP/retinoic acid inducible neural specific 1) Rattus norvegicus
Analyze
Symbol: Brinp1
Name: BMP/retinoic acid inducible neural specific 1
RGD ID: 708519
Description: Predicted to be involved in cellular response to retinoic acid; central nervous system development; and negative regulation of mitotic cell cycle. Predicted to act upstream of or within several processes, including behavioral fear response; maternal behavior; and short-term memory. Predicted to be active in cytoplasm; dendrite; and neuronal cell body. Orthologous to human BRINP1 (BMP/retinoic acid inducible neural specific 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BMP/retinoic acid-inducible neural-specific protein; BMP/retinoic acid-inducible neural-specific protein 1; bone morphogenetic protein/retinoic acid inducible neural-specific 1; bone morphogenic protein/retinoic acid inducible neural-specific 1; Dbc1; Dbccr1; deleted in bladder cancer 1; deleted in bladder cancer 1 (human); deleted in bladder cancer chromosome region candidate 1; deleted in bladder cancer chromosome region candidate 1 (human); deleted in bladder cancer protein 1 homolog; LOC140610
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8587,363,621 - 87,565,580 (-)NCBIGRCr8
mRatBN7.2582,348,501 - 82,550,506 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl582,348,930 - 82,493,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx584,718,620 - 84,863,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0586,535,928 - 86,680,999 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0586,511,601 - 86,656,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0584,919,416 - 85,123,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl584,919,367 - 85,123,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0589,012,699 - 89,215,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4586,070,267 - 86,216,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1586,075,380 - 86,221,291 (-)NCBI
Celera581,182,670 - 81,325,632 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
dendrite  (IBA,IEA)
neuronal cell body  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Homozygous deletion at the 9q32-33 candidate tumor suppressor locus in primary human bladder cancer. Nishiyama H, etal., Genes Chromosomes Cancer 1999 Oct;26(2):171-5.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. DBCCR1 mediates death in cultured bladder tumor cells. Wright KO, etal., Oncogene 2004 Jan 8;23(1):82-90.
Additional References at PubMed
PMID:11420708   PMID:15193423   PMID:20025061   PMID:22161971   PMID:24528488   PMID:27042284  


Genomics

Comparative Map Data
Brinp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8587,363,621 - 87,565,580 (-)NCBIGRCr8
mRatBN7.2582,348,501 - 82,550,506 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl582,348,930 - 82,493,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx584,718,620 - 84,863,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0586,535,928 - 86,680,999 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0586,511,601 - 86,656,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0584,919,416 - 85,123,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl584,919,367 - 85,123,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0589,012,699 - 89,215,808 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4586,070,267 - 86,216,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1586,075,380 - 86,221,291 (-)NCBI
Celera581,182,670 - 81,325,632 (-)NCBICelera
Cytogenetic Map5q24NCBI
BRINP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389119,166,629 - 119,369,435 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9119,153,458 - 119,369,435 (-)EnsemblGRCh38hg38GRCh38
GRCh379121,928,907 - 122,131,713 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369120,968,729 - 121,171,560 (-)NCBINCBI36Build 36hg18NCBI36
Build 349119,008,461 - 119,211,255NCBI
Celera992,576,710 - 92,779,541 (-)NCBICelera
Cytogenetic Map9q33.1NCBI
HuRef991,546,083 - 91,748,928 (-)NCBIHuRef
CHM1_19122,076,523 - 122,279,332 (-)NCBICHM1_1
T2T-CHM13v2.09131,360,823 - 131,563,641 (-)NCBIT2T-CHM13v2.0
Brinp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39468,679,609 - 68,872,634 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl468,679,751 - 68,872,634 (-)EnsemblGRCm39 Ensembl
GRCm38468,761,372 - 68,954,397 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl468,761,514 - 68,954,397 (-)EnsemblGRCm38mm10GRCm38
MGSCv37468,422,406 - 68,615,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36468,247,733 - 68,440,758 (-)NCBIMGSCv36mm8
Celera467,365,404 - 67,558,519 (-)NCBICelera
Cytogenetic Map4C1NCBI
cM Map435.03NCBI
Brinp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554198,529,177 - 8,704,113 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554198,529,213 - 8,704,113 (+)NCBIChiLan1.0ChiLan1.0
BRINP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21119,974,218 - 20,177,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1919,976,603 - 20,179,910 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0990,296,199 - 90,499,503 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19118,646,433 - 118,848,825 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9118,646,433 - 118,792,727 (-)Ensemblpanpan1.1panPan2
BRINP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11172,625,011 - 72,794,641 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1172,628,582 - 72,764,077 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1171,035,799 - 71,205,927 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01173,753,070 - 73,925,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1173,755,556 - 73,925,647 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11172,279,137 - 72,449,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01172,301,385 - 72,471,690 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01173,036,446 - 73,206,336 (-)NCBIUU_Cfam_GSD_1.0
Brinp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947188,077,412 - 188,250,615 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364877,845,351 - 8,019,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364877,845,799 - 8,019,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRINP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,350,367 - 259,544,576 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,350,359 - 259,544,604 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21291,412,563 - 291,465,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRINP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11220,189,270 - 20,387,494 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1220,189,295 - 20,388,089 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603522,594,629 - 22,792,813 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brinp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476015,902,858 - 16,075,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476015,902,890 - 16,071,513 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Brinp1
1199 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:24
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000007578
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat

Markers in Region
D5Rat147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2582,394,392 - 82,394,565 (+)MAPPERmRatBN7.2
Rnor_6.0584,963,058 - 84,963,230NCBIRnor6.0
Rnor_5.0589,056,339 - 89,056,511UniSTSRnor5.0
RGSC_v3.4586,116,638 - 86,116,811RGDRGSC3.4
RGSC_v3.4586,116,639 - 86,116,811UniSTSRGSC3.4
RGSC_v3.1586,121,751 - 86,121,924RGD
Celera581,226,931 - 81,227,156UniSTS
SHRSP x BN Map548.0099RGD
SHRSP x BN Map548.0099UniSTS
Cytogenetic Map5q31UniSTS
D5Got22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2582,478,606 - 82,478,831 (+)MAPPERmRatBN7.2
Rnor_6.0585,051,757 - 85,051,985NCBIRnor6.0
Rnor_5.0589,143,751 - 89,143,979UniSTSRnor5.0
RGSC_v3.4586,201,635 - 86,201,864RGDRGSC3.4
RGSC_v3.4586,201,636 - 86,201,864UniSTSRGSC3.4
RGSC_v3.1586,206,749 - 86,206,977RGD
Celera581,311,095 - 81,311,323UniSTS
RH 3.4 Map5644.8UniSTS
RH 3.4 Map5644.8RGD
RH 2.0 Map5498.7RGD
Cytogenetic Map5q31UniSTS
BE120599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2582,381,617 - 82,381,796 (+)MAPPERmRatBN7.2
Rnor_6.0584,950,283 - 84,950,461NCBIRnor6.0
Rnor_5.0589,043,564 - 89,043,742UniSTSRnor5.0
RGSC_v3.4586,103,864 - 86,104,042UniSTSRGSC3.4
Celera581,214,154 - 81,214,332UniSTS
RH 3.4 Map5644.6UniSTS
Cytogenetic Map5q31UniSTS
BE118680  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2582,484,560 - 82,484,726 (+)MAPPERmRatBN7.2
Rnor_6.0585,057,998 - 85,058,163NCBIRnor6.0
Rnor_5.0589,149,992 - 89,150,157UniSTSRnor5.0
RGSC_v3.4586,207,592 - 86,207,757UniSTSRGSC3.4
Celera581,317,043 - 81,317,208UniSTS
RH 3.4 Map5645.0UniSTS
Cytogenetic Map5q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64
Low 16 11 10 10 10 16 34 11
Below cutoff 3 17 43 28 17 28 7 8 18 6 7

Sequence


RefSeq Acc Id: ENSRNOT00000007578   ⟹   ENSRNOP00000007578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl582,348,930 - 82,493,150 (-)Ensembl
Rnor_6.0 Ensembl584,919,367 - 85,123,829 (-)Ensembl
RefSeq Acc Id: NM_080482   ⟹   NP_536730
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8587,364,046 - 87,508,256 (-)NCBI
mRatBN7.2582,348,926 - 82,493,150 (-)NCBI
Rnor_6.0584,919,843 - 85,066,677 (-)NCBI
Rnor_5.0589,012,699 - 89,215,808 (-)NCBI
RGSC_v3.4586,070,267 - 86,216,181 (-)RGD
Celera581,182,670 - 81,325,632 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238272   ⟹   XP_006238334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8587,363,621 - 87,565,580 (-)NCBI
mRatBN7.2582,348,501 - 82,550,506 (-)NCBI
Rnor_6.0584,919,416 - 85,123,828 (-)NCBI
Rnor_5.0589,012,699 - 89,215,808 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_536730 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238334 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB55642 (Get FASTA)   NCBI Sequence Viewer  
  EDM10504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007578
  ENSRNOP00000007578.2
GenBank Protein Q925T8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_536730   ⟸   NM_080482
- Peptide Label: precursor
- UniProtKB: Q925T8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006238334   ⟸   XM_006238272
- Peptide Label: isoform X1
- UniProtKB: G3V6Q9 (UniProtKB/TrEMBL),   A6J803 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007578   ⟸   ENSRNOT00000007578
Protein Domains
MACPF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925T8-F1-model_v2 AlphaFold Q925T8 1-760 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708519 AgrOrtholog
BioCyc Gene G2FUF-41023 BioCyc
Ensembl Genes ENSRNOG00000005561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007578 ENTREZGENE
  ENSRNOT00000007578.5 UniProtKB/TrEMBL
InterPro BRINP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140610 UniProtKB/Swiss-Prot
NCBI Gene 140610 ENTREZGENE
PANTHER BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15564 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BRINP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Brinp1 PhenoGen
RatGTEx ENSRNOG00000005561 RatGTEx
SMART MACPF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6J803 ENTREZGENE, UniProtKB/TrEMBL
  BRNP1_RAT UniProtKB/Swiss-Prot
  G3V6Q9 ENTREZGENE, UniProtKB/TrEMBL
  Q925T8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Brinp1  BMP/retinoic acid inducible neural specific 1  Brinp1  bone morphogenetic protein/retinoic acid inducible neural-specific 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-14 Brinp1  bone morphogenetic protein/retinoic acid inducible neural-specific 1  Brinp1  bone morphogenic protein/retinoic acid inducible neural-specific 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-07 Brinp1  bone morphogenic protein/retinoic acid inducible neural-specific 1  Dbc1  deleted in bladder cancer 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-10 Dbc1  deleted in bladder cancer 1  Dbc1  deleted in bladder cancer 1 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Dbc1  deleted in bladder cancer 1 (human)  Dbc1  deleted in bladder cancer 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Dbc1  deleted in bladder cancer 1   Dbccr1  deleted in bladder cancer chromosome region candidate 1 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Dbccr1  deleted in bladder cancer chromosome region candidate 1 (human)  LOC140610  BMP/retinoic acid-inducible neural-specific protein  Symbol and Name updated 1299863 APPROVED