Marker: D17Rat65 |
| Symbol: |
D17Rat65 |
| Previously known as: |
oxsts6403; R0087-A06;
|
| RGD ID: |
39318 |
| Expected Size: |
386 (bp) |
| Position |
| Rat Assembly | Chr | Position (strand) | Source | JBrowse |
|---|
GRCr8 | 17 | 87,387,778 - 87,388,164 (+) | Marker Load Pipeline | | mRatBN7.2 | 17 | 82,479,461 - 82,479,847 (+) | MAPPER | mRatBN7.2 | Rnor_6.0 | 17 | 86,730,695 - 86,731,080 | NCBI | Rnor6.0 | Rnor_5.0 | 17 | 88,435,111 - 88,435,496 | UniSTS | Rnor5.0 | RGSC_v3.4 | 17 | 93,929,621 - 93,930,006 | UniSTS | RGSC3.4 | Celera | 17 | 81,749,932 - 81,750,317 | UniSTS | | RGSC_v3.1 | 17 | 93,940,453 - 93,940,839 | RGD | | RH 3.4 Map | 17 | 835.8 | RGD | | RH 3.4 Map | 17 | 835.8 | UniSTS | | RH 2.0 Map | 17 | 694.9 | RGD | | SHRSP x BN Map | 17 | 47.5399 | RGD | | FHH x ACI Map | 17 | 65.42 | RGD | |
|
| Is Marker For: |
Strains:
ACI/N ;
AVN/Orl ;
BBDR/Rhw ;
BBDP/Rhw ;
BC/CpbU ;
BDIX/Han ;
BDVII/Cub ;
BN-Lx/Cub ;
BN/SsNHsd ;
BP/Cub ;
BUF/Pit ;
COP/OlaHsd ;
DA/PitN ;
FHH/Eur ;
F344/Pit ;
GH/Omr ;
GK/KyoSwe ;
DON/Melb ;
M520/N ;
IS/Kyo ;
WN/N ;
LH/Mav ;
LE/Mol ;
LEW/Pit ;
LOU/CHan ;
LN/Mav ;
MHS/Gib ;
MNR/N ;
MNRA/N ;
MNS/Gib ;
MR/Pit ;
NEDH/K ;
NP9 ;
ODU/N ;
OKA/Wsl ;
OM/Ztm ;
P5C ;
PVG/Pit ;
SD/Rij ;
SHR/OlaHsd ;
SR/Jr ;
SHRSP/Riv ;
SS/Jr ;
WAG/RijKyo ;
WF/Pit ;
WIST/Nhg ;
WKY/OlaHsd ;
WTC/Kyo ;
SS.LEW-(D17Chm14-D17Rat65)/Ayd ;
SS.LEW-(D17Rat65-D17Chm2)/Ayd ;
SS.LEW-(D17Rat65-Prl)/Ayd
QTLs:
Bvd4
Kidm40
Cm121
Genes:
LOC100909950
|
Annotation
References - curated
| # |
Reference Title |
Reference Citation |
| 1. |
Data downloaded from Wellcome Trust, University of Oxford |
Data downloaded from Wellcome Trust, University of Oxford
|
| 2. |
Genome-wide linkage analysis of inherited hydrocephalus in the H-Tx rat. |
Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
|
| 3. |
High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. |
Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
|
| 4. |
Rat Genetic Map Data |
Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
|
| 5. |
Electronic Transfer of SSLP Data |
Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
|
| 6. |
UniSTS Pipeline |
RGD automated pipelines
|
| 7. |
RH Map Project |
RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
|
| 8. |
A high density integrated genetic linkage and radiation hybrid map of the laboratory rat |
Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
|
Strains and Sequence
Sequence
| |
| Forward Primer |
TGCCAGTCTTTTCAATGTGG |
| Reverse Primer |
GGGTAAGGACAAGGTTCCTGA |
| |
| Template |
CTGCAGGTCGATCTAGAGGATCCCCTTGATCTCAGCAGATGGCTGACTAAGTGTTGTCTTCGTG
TGAGCAGGGAAAGAAAGGTCGAGATAAGAAAAATTAGGCTTTATTCTGAGGAGGAGAAAAGGAA
CTTAGGAGGATCAAAAGGGTAAGGACAAGGTTCCTGAAAAGTACACAGGTAAAGACAGGAGATA
TACGGCAGAGAAGTAAACCAAGCCAAACCAGCGCTGTCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTCTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTGGTATCCCCACTTACAAGGTTCTCCACATTGAAAAGACTGGCAGTTCTAGGGGTACC
GAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACANTT
CCACACAACATACGAGCCGNNAGCATAAAGTGTNNNCCTGGGGTGCCTAATGAGTGAGCTAACT
CACATTAATTGCGTTGCGCTCACTGCCCGCTTTNCANTCGGGAAACTGTCGTGCANNGCATTAA
TNNATCGGCNANCGCGGGGAGAGCGGTTTCNNNTGGCNCANNNGTTT
|
Strain Variation
Strain, Expected Size(s)
Region
Genes in Region
| 11407481 | LOC108348625 | uncharacterized LOC108348625 | 17 | 87331061 | 87403354 | Rat | |
QTLs in Region (GRCr8)
| 1300131 | Bp193 | Blood pressure QTL 193 | 3.3 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 17 | 68550040 | 93515804 | Rat | | 12904736 | Cm121 | Cardiac mass QTL 121 | | 0.043 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 17 | 42388164 | 87388164 | Rat | | 2301412 | Kidm40 | Kidney mass QTL 40 | | 0.001 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 17 | 42388164 | 87388164 | Rat | | 1300148 | Bp192 | Blood pressure QTL 192 | 3.47 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 17 | 46050126 | 91050126 | Rat | | 1354588 | Bvd4 | Brain ventricular dilatation QTL 4 | 5.31 | 0.001 | brain ventricle morphology trait (VT:0000822) | hydrocephalus severity score (CMO:0001881) | 17 | 58194064 | 87388164 | Rat | | 61466 | Niddm12 | Non-insulin dependent diabetes mellitus QTL 12 | 3.2 | 0.001 | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 17 | 65154872 | 93515804 | Rat | | 4889894 | Eae33 | Experimental allergic encephalomyelitis QTL 33 | 5.2 | 0.0001 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 17 | 55604597 | 93006569 | Rat | | 2317038 | Ginf3 | Gastrointestinal inflammation QTL 3 | 2.89 | 0.005 | liver integrity trait (VT:0010547) | liver granuloma severity score (CMO:0002157) | 17 | 54829503 | 93515804 | Rat | | 2324621 | Coatc5 | Coat color QTL 5 | | | coat/hair pigmentation trait (VT:0010463) | pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) | 17 | 42654895 | 87654895 | Rat | | 1598871 | Memor5 | Memory QTL 5 | 5.3 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 17 | 40968017 | 89341781 | Rat | |
