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Strain Registration

Strain: SS.LEW-(D17Chm14-D17Rat65)/Ayd

Symbol: SS.LEW-(D17Chm14-D17Rat65)/Ayd
Strain: SS.LEW-(D17Chm14-D17Rat65)
Substrain: Ayd
RGD ID: 7421617
Citation ID: RRID:RGD_7421617
Ontology ID: RS:0003584
Also Known As: C17S.L3; SS.LEW-(D17Chm14-D17Rat65)/Ayd
Type: congenic
Available Source: Not Available
Origination: Centre Hospitalier de Universite de Montreal (CRCHUM), Quebec, Canada
Description: A segment of chromosome 17 was transferred from LEW/Crlc into the SS/Jr background, the F2 rats were genotyped with markers that resided in the region of interest, heterozygous rat was then backcrossed to SS/Jr rat to duplicate the fragment.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21768,783,937 - 82,479,847RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01772,580,584 - 86,731,080RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01774,265,283 - 88,435,496RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41780,181,988 - 93,930,006RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
hypertension  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure

References

References - curated
# Reference Title Reference Citation
1. Modularization and epistatic hierarchy determine homeostatic actions of multiple blood pressure quantitative trait loci. Chauvet C, etal., Hum Mol Genet. 2013 Nov 15;22(22):4451-9. doi: 10.1093/hmg/ddt294. Epub 2013 Jun 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D17Chm14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21768,783,937 - 68,784,138 (+)MAPPER
Rnor_6.01772,580,584 - 72,580,782NCBI
Rnor_5.01774,265,283 - 74,265,481UniSTS
RGSC_v3.41780,181,988 - 80,182,186UniSTS
Celera1768,272,231 - 68,272,429UniSTS
Cytogenetic Map17 RGD

Flank 2 / 1 (D17Rat65)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21782,479,461 - 82,479,847 (+)MAPPER
Rnor_6.01786,730,695 - 86,731,080NCBI
Rnor_5.01788,435,111 - 88,435,496UniSTS
RGSC_v3.41793,929,621 - 93,930,006UniSTS
RGSC_v3.11793,940,453 - 93,940,839RGD
Celera1781,749,932 - 81,750,317UniSTS
RH 3.4 Map17835.8UniSTS
RH 3.4 Map17835.8RGD
RH 2.0 Map17694.9RGD
SHRSP x BN Map1747.5399RGD
FHH x ACI Map1765.42RGD

Additional Information