D8Rat8 Marker Search Result - Rat Genome Database

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Marker: D8Rat8

Symbol: D8Rat8
Previously known as: oxsts7475; R033-D10; R0033-D10; 
RGD ID: 36267
Expected Size: 325 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr88122,188,448 - 122,188,773 (+)Marker Load Pipeline
mRatBN7.28113,310,201 - 113,310,524 (+)MAPPERmRatBN7.2
Rnor_6.08121,637,216 - 121,637,540NCBIRnor6.0
Rnor_5.08120,958,995 - 120,959,319UniSTSRnor5.0
RGSC_v3.48117,988,093 - 117,988,418RGDRGSC3.4
RGSC_v3.48117,988,094 - 117,988,418UniSTSRGSC3.4
Celera8112,564,246 - 112,564,570UniSTS
RGSC_v3.18118,007,549 - 118,007,873RGD
RH 3.4 Map81196.4UniSTS
RH 3.4 Map81196.4RGD
RH 2.0 Map8946.6RGD
SHRSP x BN Map876.2399RGD
Is Marker For: Strains:   AVN/Orl ; BBDP/Rhw ; BBDR/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; DA/PitN ; DON/Melb ; FHH/Eur ; IS/Kyo ; LE/Mol ; LEW/Pit ; LH/Mav ; WN/N ; WKY/OlaHsd ; MNR/N ; ODU/N ; WF/Pit ; MNS/Gib ; NP9 ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SHRSP/Riv ; ACI/N ; BN-Lx/Cub ; LN/Mav ; GH/Omr ; NEDH/K ; COP/OlaHsd ; MHS/Gib ; MNRA/N ; WTC/Kyo ; LOU/CHan ; MR/Pit ; WIST/Nhg ; OKA/Wsl ; WAG/RijKyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ATGAGAAGGGTGGGAGGTCT
Reverse Primer CCTGAGTTGAGTGCCTGTGA
 
Template 
GCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCTGAGTTGAGTGCCTGTGAACT
GTCAAGCACCCTGATCCACCCTGGGGCTTCCCATGAAGTAGAGCACAGTTCTGGTTCTACAGAG
GATGCTGGTTTATCCAGGTGCTCGCTCTCCTCCTCTCTCTCTTCTGCCTCTGTCTCTCTCTGTC
TCGTCTCTCTGTCTCTGTCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGGA
AGAGGAGTCAGGGGGCTTAAGGTTCCTCAGACCTCCCACCCTTCTCATTTCCTGTGGTTCAATT
AAGGAGACCATTCCGATGTGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCT
GTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAG
CCTGGTGTGCTAATGAGTGAGCTAACTCAATTAATGCGTNNCTCATGCCGCTTNCAGTCGGGAA
CTGTCGTGCACTGANATGATCGGCACGGGGGAAGGGTNCGTATTNCGCANTGTTCTNCACATGA
AGNCAATGATCCNCACGCTNCTGAAANCACACGCACT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
7505909LOC102554279uncharacterized LOC1025542798122163879122216662Rat

Nucleotide Sequences
GenBank Nucleotide CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Additional Information