D1Rat49 Marker Search Result - Rat Genome Database

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Marker: D1Rat49

Symbol: D1Rat49
Previously known as: oxsts6707; R030-B04; R0030-B04; 
RGD ID: 36075
Expected Size: 173 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21154,464,069 - 154,464,242 (+)MAPPERmRatBN7.2
Rnor_6.01165,129,767 - 165,129,939NCBIRnor6.0
Rnor_5.01171,330,622 - 171,330,794UniSTSRnor5.0
RGSC_v3.41157,497,884 - 157,498,254RGDRGSC3.4
RGSC_v3.41157,497,945 - 157,498,117UniSTSRGSC3.4
Celera1152,548,393 - 152,548,555UniSTS
RGSC_v3.11157,576,351 - 157,576,523RGD
RH 3.4 Map11257.0UniSTS
RH 3.4 Map11257.0RGD
RH 2.0 Map1825.0RGD
SHRSP x BN Map177.8599RGD
FHH x ACI Map170.99RGD
Is Marker For: Strains:   ACI/N ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SHRSP.WKY-(D1Rat49-D1Arb21)/1Izm ; SHRSP.WKY-(D1Rat49-D1Arb21)/2Izm ; SS.LEW-(D1Rat35-D1Rat49)/Jr ; SS.LEW-(D1Rat196-D1Rat49)/Jr ; SS.LEW-(D1Uia2-D1Rat49)/Jr ; SS.LEW-(D1Mco38-D1Rat49)/Jr ; SS.LEW-(D1Mco2-D1Rat49)/Jr ; SS.LEW-(D1Mco99-D1Rat49)/Mco ; SS.LEW-(D1Mco85-D1Rat49)/Mco


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCAGGTCCTAAACTGGCTTG
Reverse Primer CCCTCATGGCATGCTTTTTA
 
Template 
TTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCACAAGAGGGCACTGGATCCCCTGGAGCT
GGAGTAGAGGTTGGTTCTGAGCCATCTGATGTGAGTACTGGGAACCAAACCTGGGATCTCAGCT
CTGCAAGGGCAGTACCTGCTGCTAACCTCTGCGCCGCCTCCAGCCCTCATGGCATGCTTTTTAA
AGTTGCATCGTGTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTAAGGGACTTTTGAGACAATCCTCTTGGCTCTCTAGCAGTAGTGTGCCTTACAGAATTCAAG
CCAGTTTAGGACCTGGATTTAGTCCCAACTGTTGCTCCTTTTGGCTATCCATCTTCCTGCATAT
CTGATCACTGGGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCT

Region

Nucleotide Sequences
GenBank Nucleotide BX511201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information