Nav2 (neuron navigator 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nav2 (neuron navigator 2) Rattus norvegicus
Analyze
Symbol: Nav2
Name: neuron navigator 2
RGD ID: 619778
Description: Predicted to enable 3'-5' DNA helicase activity and heparin binding activity. Involved in nervous system development. Predicted to be located in interstitial matrix. Orthologous to human NAV2 (neuron navigator 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361581; Rainb1; retinoic acid inducible in neuroblastoma cells 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81107,799,968 - 108,458,546 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1107,805,096 - 108,458,546 (+)EnsemblGRCr8
mRatBN7.2198,957,629 - 99,322,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl198,663,759 - 99,322,337 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1104,312,514 - 104,676,412 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01112,784,424 - 113,148,333 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,106,631 - 106,470,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01104,575,765 - 104,941,554 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1104,576,589 - 104,941,552 (+)Ensemblrn6Rnor6.0
Rnor_5.01105,340,947 - 105,994,390 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,041,044 - 99,410,077 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera193,160,898 - 93,522,785 (+)NCBICelera
RGSC_v3.1199,329,852 - 99,330,326 (+)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A mammalian homolog of unc-53 is regulated by all-trans retinoic acid in neuroblastoma cells and embryos. Merrill RA, etal., Proc Natl Acad Sci U S A 2002 Mar 19;99(6):3422-7.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15158073   PMID:18757743   PMID:20184720   PMID:21419114  


Genomics

Comparative Map Data
Nav2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81107,799,968 - 108,458,546 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1107,805,096 - 108,458,546 (+)EnsemblGRCr8
mRatBN7.2198,957,629 - 99,322,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl198,663,759 - 99,322,337 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1104,312,514 - 104,676,412 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01112,784,424 - 113,148,333 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,106,631 - 106,470,586 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01104,575,765 - 104,941,554 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1104,576,589 - 104,941,552 (+)Ensemblrn6Rnor6.0
Rnor_5.01105,340,947 - 105,994,390 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,041,044 - 99,410,077 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera193,160,898 - 93,522,785 (+)NCBICelera
RGSC_v3.1199,329,852 - 99,330,326 (+)NCBI
Cytogenetic Map1q22NCBI
NAV2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,345,236 - 20,121,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,350,724 - 20,121,601 (+)Ensemblhg38GRCh38
GRCh371119,366,783 - 20,143,147 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361119,691,488 - 20,099,723 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341119,691,487 - 20,099,722NCBI
Celera1119,505,019 - 20,275,779 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1119,056,089 - 19,826,507 (+)NCBIHuRef
CHM1_11119,371,529 - 20,143,061 (+)NCBICHM1_1
T2T-CHM13v2.01119,465,285 - 20,242,238 (+)NCBIT2T-CHM13v2.0
Nav2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39748,608,796 - 49,259,838 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl748,558,464 - 49,259,838 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38748,959,063 - 49,610,090 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl748,908,716 - 49,610,090 (+)Ensemblmm10GRCm38
MGSCv37756,214,443 - 56,865,458 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36749,232,742 - 49,322,663 (+)NCBIMGSCv36mm8
Celera744,402,885 - 45,057,893 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.23NCBI
Nav2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955476613,512 - 996,535 (+)Ensembl
ChiLan1.0NW_004955476614,215 - 996,450 (+)NCBIChiLan1.0ChiLan1.0
NAV2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2921,649,387 - 22,419,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11121,974,896 - 22,379,610 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01119,370,095 - 20,143,255 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11119,288,369 - 20,055,758 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1119,288,598 - 20,055,758 (+)EnsemblpanPan2panpan1.1
NAV2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,458,280 - 42,181,227 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,458,984 - 42,177,813 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2140,930,438 - 41,658,542 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02142,575,579 - 43,302,697 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,581,349 - 43,300,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,906,748 - 42,305,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,760,150 - 42,480,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02142,137,560 - 42,861,640 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nav2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,807,521 - 43,503,750 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936654740,194 - 1,119,067 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936654740,270 - 1,119,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl239,266,926 - 40,078,124 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1239,263,939 - 40,083,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2242,202,180 - 42,246,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAV2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,887,172 - 45,648,260 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,887,169 - 45,214,703 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038142,222,004 - 142,987,858 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,170,921 - 11,414,050 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476611,056,877 - 11,417,291 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nav2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12150,233,279 - 150,601,338 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nav2
5062 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:818
Count of miRNA genes:289
Interacting mature miRNAs:362
Transcripts:ENSRNOT00000046529
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat

Markers in Region
D1Rat102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,141,112 - 99,141,287 (+)MAPPERmRatBN7.2
Rnor_6.01104,759,738 - 104,759,912NCBIRnor6.0
Rnor_5.01105,814,136 - 105,814,310UniSTSRnor5.0
RGSC_v3.4199,224,208 - 99,224,690RGDRGSC3.4
RGSC_v3.4199,224,444 - 99,224,618UniSTSRGSC3.4
Celera193,343,398 - 93,343,572UniSTS
RGSC_v3.1199,302,555 - 99,302,729RGD
RH 3.4 Map1922.4UniSTS
RH 3.4 Map1922.4RGD
RH 2.0 Map1601.7RGD
FHH x ACI Map150.0RGD
Cytogenetic Map1q22UniSTS
D1Rat465  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81108,243,483 - 108,243,606 (+)Marker Load Pipeline
mRatBN7.2199,107,258 - 99,107,381 (+)MAPPERmRatBN7.2
Rnor_6.01104,725,891 - 104,726,013NCBIRnor6.0
Rnor_5.01105,780,289 - 105,780,411UniSTSRnor5.0
RGSC_v3.4199,190,249 - 99,190,372RGDRGSC3.4
RGSC_v3.4199,190,250 - 99,190,372UniSTSRGSC3.4
Celera193,309,562 - 93,309,684UniSTS
RGSC_v3.1199,268,360 - 99,268,483RGD
FHH x ACI Map149.52UniSTS
FHH x ACI Map149.52RGD
Cytogenetic Map1q22UniSTS
D1Got99  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,063,515 - 99,063,672 (+)MAPPERmRatBN7.2
Rnor_6.01104,681,748 - 104,681,904NCBIRnor6.0
Rnor_5.01105,736,323 - 105,736,479UniSTSRnor5.0
RGSC_v3.4199,146,344 - 99,146,501RGDRGSC3.4
RGSC_v3.4199,146,345 - 99,146,501UniSTSRGSC3.4
Celera193,266,014 - 93,266,170UniSTS
RGSC_v3.1199,224,455 - 99,224,612RGD
RH 3.4 Map1917.3UniSTS
RH 3.4 Map1917.3RGD
RH 2.0 Map1603.7RGD
Cytogenetic Map1q22UniSTS
36.MMHAP29FRD12.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2198,958,493 - 98,958,575 (+)MAPPERmRatBN7.2
Rnor_6.01104,576,685 - 104,576,766NCBIRnor6.0
Rnor_5.01105,631,418 - 105,631,499UniSTSRnor5.0
RGSC_v3.4199,041,140 - 99,041,221UniSTSRGSC3.4
Celera193,160,994 - 93,161,075UniSTS
Cytogenetic Map1q22UniSTS
RH141496  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81108,455,343 - 108,455,538 (+)Marker Load Pipeline
mRatBN7.2199,319,134 - 99,319,329 (+)MAPPERmRatBN7.2
Rnor_6.01104,938,350 - 104,938,544NCBIRnor6.0
Rnor_5.01105,991,186 - 105,991,380UniSTSRnor5.0
RGSC_v3.4199,406,875 - 99,407,069UniSTSRGSC3.4
Celera193,519,582 - 93,519,776UniSTS
RH 3.4 Map1921.0UniSTS
Cytogenetic Map1q22UniSTS
BI288607  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,299,259 - 99,299,457 (+)MAPPERmRatBN7.2
Rnor_6.01104,918,332 - 104,918,529NCBIRnor6.0
Rnor_5.01105,971,168 - 105,971,365UniSTSRnor5.0
RGSC_v3.4199,387,018 - 99,387,215UniSTSRGSC3.4
Celera193,499,704 - 93,499,901UniSTS
RH 3.4 Map1922.4UniSTS
Cytogenetic Map1q22UniSTS
RH135248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,040,653 - 99,040,855 (+)MAPPERmRatBN7.2
Rnor_6.01104,658,902 - 104,659,103NCBIRnor6.0
Rnor_5.01105,713,635 - 105,713,836UniSTSRnor5.0
RGSC_v3.4199,123,507 - 99,123,708UniSTSRGSC3.4
Celera193,243,159 - 93,243,360UniSTS
RH 3.4 Map1918.8UniSTS
Cytogenetic Map1q22UniSTS
RH138789  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,208,188 - 99,208,338 (+)MAPPERmRatBN7.2
Rnor_6.01104,827,341 - 104,827,490NCBIRnor6.0
Rnor_5.01105,880,529 - 105,880,678UniSTSRnor5.0
RGSC_v3.4199,293,626 - 99,293,775UniSTSRGSC3.4
Celera193,409,027 - 93,409,176UniSTS
RH 3.4 Map1920.7UniSTS
Cytogenetic Map1q22UniSTS
BQ195500  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2198,976,840 - 98,976,995 (+)MAPPERmRatBN7.2
Rnor_6.01104,595,024 - 104,595,178NCBIRnor6.0
Rnor_5.01105,649,757 - 105,649,911UniSTSRnor5.0
RGSC_v3.4199,059,756 - 99,059,910UniSTSRGSC3.4
Celera193,179,350 - 93,179,504UniSTS
RH 3.4 Map1912.29UniSTS
Cytogenetic Map1q22UniSTS
UniSTS:498520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2199,309,776 - 99,310,542 (+)MAPPERmRatBN7.2
Rnor_6.01104,928,854 - 104,929,619NCBIRnor6.0
Rnor_5.01105,981,690 - 105,982,455UniSTSRnor5.0
RGSC_v3.4199,397,532 - 99,398,297UniSTSRGSC3.4
Celera193,510,222 - 93,510,987UniSTS
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 79 179 91 90 59 112 59 6 430 232 19 159 108 123 31 22 22

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF466145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046529   ⟹   ENSRNOP00000051474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl198,958,398 - 99,322,337 (+)Ensembl
Rnor_6.0 Ensembl1104,576,589 - 104,941,552 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078477   ⟹   ENSRNOP00000074453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
mRatBN7.2 Ensembl199,017,567 - 99,322,337 (+)Ensembl
Rnor_6.0 Ensembl1104,635,989 - 104,940,171 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109728   ⟹   ENSRNOP00000087383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
mRatBN7.2 Ensembl199,017,567 - 99,322,337 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111190   ⟹   ENSRNOP00000080959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl198,663,759 - 99,322,337 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120586   ⟹   ENSRNOP00000098226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120587   ⟹   ENSRNOP00000098227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120588   ⟹   ENSRNOP00000098228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,154,245 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000124754   ⟹   ENSRNOP00000099312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,636 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130191   ⟹   ENSRNOP00000104067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156603   ⟹   ENSRNOP00000106267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1107,805,096 - 108,458,546 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158547   ⟹   ENSRNOP00000105628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1108,094,437 - 108,458,546 (+)Ensembl
RefSeq Acc Id: NM_138529   ⟹   NP_612538
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,094,636 - 108,458,546 (+)NCBI
mRatBN7.2198,958,398 - 99,322,337 (+)NCBI
Rnor_6.01104,576,589 - 104,941,552 (+)NCBI
Rnor_5.01105,340,947 - 105,994,390 (+)NCBI
RGSC_v3.4199,041,044 - 99,410,077 (+)RGD
Celera193,160,898 - 93,522,785 (+)RGD
Sequence:
RefSeq Acc Id: XM_017588741   ⟹   XP_017444230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,093,831 - 108,458,546 (+)NCBI
mRatBN7.2198,957,629 - 99,322,339 (+)NCBI
Rnor_6.01104,575,766 - 104,941,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063278000   ⟹   XP_063134070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,093,831 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278035   ⟹   XP_063134105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,093,831 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278060   ⟹   XP_063134130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81107,799,968 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278089   ⟹   XP_063134159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,192,569 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278121   ⟹   XP_063134191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,153,737 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278151   ⟹   XP_063134221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81107,799,968 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278176   ⟹   XP_063134246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,153,742 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278204   ⟹   XP_063134274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,093,831 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278263   ⟹   XP_063134333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,247,888 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278283   ⟹   XP_063134353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,247,973 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278300   ⟹   XP_063134370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,248,303 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278325   ⟹   XP_063134395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,284,999 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278407   ⟹   XP_063134477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,374,542 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278458   ⟹   XP_063134528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,375,666 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278482   ⟹   XP_063134552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,374,544 - 108,458,546 (+)NCBI
RefSeq Acc Id: XM_063278531   ⟹   XP_063134601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,403,902 - 108,458,546 (+)NCBI
RefSeq Acc Id: XR_010060052
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81108,093,829 - 108,439,355 (+)NCBI
Protein Sequences
Protein RefSeqs NP_612538 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444230 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134070 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134105 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134130 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134191 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134221 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134246 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134274 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134353 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134370 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134395 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134477 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134528 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134552 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134601 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL96481 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074453
  ENSRNOP00000074453.4
  ENSRNOP00000087383
  ENSRNOP00000087383.3
  ENSRNOP00000098226
  ENSRNOP00000098226.1
  ENSRNOP00000098227.2
  ENSRNOP00000098228
  ENSRNOP00000098228.2
  ENSRNOP00000099312.1
  ENSRNOP00000104067
  ENSRNOP00000104067.1
  ENSRNOP00000105628
  ENSRNOP00000105628.1
  ENSRNOP00000106267
  ENSRNOP00000106267.1
RefSeq Acc Id: NP_612538   ⟸   NM_138529
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444230   ⟸   XM_017588741
- Peptide Label: isoform X1
- UniProtKB: F1LR12 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074453   ⟸   ENSRNOT00000078477
Ensembl Acc Id: ENSRNOP00000051474   ⟸   ENSRNOT00000046529
Ensembl Acc Id: ENSRNOP00000087383   ⟸   ENSRNOT00000109728
Ensembl Acc Id: ENSRNOP00000080959   ⟸   ENSRNOT00000111190
RefSeq Acc Id: XP_063134130   ⟸   XM_063278060
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134221   ⟸   XM_063278151
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134070   ⟸   XM_063278000
- Peptide Label: isoform X2
- UniProtKB: F1LR12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134105   ⟸   XM_063278035
- Peptide Label: isoform X3
- UniProtKB: F1LR12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134274   ⟸   XM_063278204
- Peptide Label: isoform X9
- UniProtKB: F1LR12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134191   ⟸   XM_063278121
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134246   ⟸   XM_063278176
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K833 (UniProtKB/TrEMBL),   A0A8I6A8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134159   ⟸   XM_063278089
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134333   ⟸   XM_063278263
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134353   ⟸   XM_063278283
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134370   ⟸   XM_063278300
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134395   ⟸   XM_063278325
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZQM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134477   ⟸   XM_063278407
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063134552   ⟸   XM_063278482
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063134528   ⟸   XM_063278458
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063134601   ⟸   XM_063278531
- Peptide Label: isoform X14
Ensembl Acc Id: ENSRNOP00000106267   ⟸   ENSRNOT00000156603
Ensembl Acc Id: ENSRNOP00000105628   ⟸   ENSRNOT00000158547
Ensembl Acc Id: ENSRNOP00000098228   ⟸   ENSRNOT00000120588
Ensembl Acc Id: ENSRNOP00000098227   ⟸   ENSRNOT00000120587
Ensembl Acc Id: ENSRNOP00000098226   ⟸   ENSRNOT00000120586
Ensembl Acc Id: ENSRNOP00000104067   ⟸   ENSRNOT00000130191
Ensembl Acc Id: ENSRNOP00000099312   ⟸   ENSRNOT00000124754

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LR12-F1-model_v2 AlphaFold F1LR12 1-2425 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619778 AgrOrtholog
BioCyc Gene G2FUF-59567 BioCyc
Ensembl Genes ENSRNOG00000014530 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078477 ENTREZGENE
  ENSRNOT00000078477.4 UniProtKB/TrEMBL
  ENSRNOT00000109728 ENTREZGENE
  ENSRNOT00000109728.3 UniProtKB/TrEMBL
  ENSRNOT00000120586 ENTREZGENE
  ENSRNOT00000120586.2 UniProtKB/TrEMBL
  ENSRNOT00000120587.2 UniProtKB/TrEMBL
  ENSRNOT00000120588 ENTREZGENE
  ENSRNOT00000120588.2 UniProtKB/TrEMBL
  ENSRNOT00000124754.1 UniProtKB/TrEMBL
  ENSRNOT00000130191 ENTREZGENE
  ENSRNOT00000130191.1 UniProtKB/TrEMBL
  ENSRNOT00000156603 ENTREZGENE
  ENSRNOT00000156603.1 UniProtKB/TrEMBL
  ENSRNOT00000158547 ENTREZGENE
  ENSRNOT00000158547.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CortBP2_NAV1-like_AAA_lid UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  NAV1-like_ubiquitin-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 171563 ENTREZGENE
PANTHER NEURON NAVIGATOR 2 UniProtKB/TrEMBL
  PTHR12784 UniProtKB/TrEMBL
Pfam AAA_lid_NAV1 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  Ubiquitin_6 UniProtKB/TrEMBL
PhenoGen Nav2 PhenoGen
PROSITE PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014530 RatGTEx
SMART AAA UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K833 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQM9 ENTREZGENE
  A0A8I6A8E6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KVY7_RAT UniProtKB/TrEMBL
  A0ABK0KW69_RAT UniProtKB/TrEMBL
  A0ABK0LCH0_RAT UniProtKB/TrEMBL
  A0ABK0LEU1_RAT UniProtKB/TrEMBL
  A0ABK0LM62_RAT UniProtKB/TrEMBL
  A0ABK0LR10_RAT UniProtKB/TrEMBL
  A0ABK0LVI0_RAT UniProtKB/TrEMBL
  F1LR12 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-28 Nav2  neuron navigator 2  Rainb1  retinoic acid inducible in neuroblastoma cells 1  Symbol and Name updated 1299863 APPROVED
2006-04-28 Rainb1  retinoic acid inducible in neuroblastoma cells 1  Nav2_predicted  neuron navigator 2 (predicted)  Data merged from RGD:1310003 737654 APPROVED
2005-01-20 Rainb1  retinoic acid inducible in neuroblastoma cells 1      Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Nav2_predicted  neuron navigator 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED
2002-08-07 Rainb1  retinoic acid inducible in neuroblastoma cells 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology has high similarity to C. elegans unc-53, which is required for axon elongation of mechanosensory neurons 633822