Cia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia2 (Collagen induced arthritis QTL 2) Rattus norvegicus

Symbol: Cia2
Name: Collagen induced arthritis QTL 2
RGD ID: 61433
Previously known as: Type II Collagen induced arthritis QTL 2
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 5.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,430,754 - 91,209,302RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0179,689,765 - 94,909,507RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0180,946,391 - 96,008,597RGDRnor5.0
RGSC_v3.4133,153,323 - 78,153,323RGDRGSC3.4
RGSC_v3.1133,231,434 - 78,231,434RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Tgfbr1 is a candidate Gene for Cia2
Pkrcg is a candidate Gene for Cia2

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci disposing for both experimental arthritis and encephalomyelitis in the DA rat; impact on severity of myelin oligodendrocyte glycoprotein-induced experimental autoimmune encephalomyelitis and antibody isotype pattern. Dahlman I, etal., Eur J Immunol 1998 Jul;28(7):2188-96
2. Genetic dissection of a rat model for rheumatoid arthritis: significant gender influences on autosomal modifier loci Furuya T, etal., Hum Mol Genet 2000 Sep 22;9(15):2241-50
3. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
4. A genome scan localizes five non-MHC loci controlling collagen-induced arthritis in rats. Remmers EF, etal., Nat Genet 1996 Sep;14(1):82-5
5. The genetic control of rheumatoid factor production in a rat model of rheumatoid arthritis. Wernhoff P, etal., Arthritis Rheum. 2003 Dec;48(12):3584-96.
6. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
7. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Pia36 maps to same region RGD:2302026


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2467Cyp2b2cytochrome P450, family 2, subfamily b, polypeptide 218159453481608567Rat
2477Cyp2g1cytochrome P450, family 2, subfamily g, polypeptide 118214563582156862Rat
2082Akt2AKT serine/threonine kinase 218287722882933828Rat
3631Scn1bsodium voltage-gated channel beta subunit 118635391786363820Rat
2735Grik5glutamate ionotropic receptor kainate type subunit 518060587880667896Rat
69053Lypd3Ly6/Plaur domain containing 318022644980230901Rat
2294Ccne1cyclin E119078194790791188Rat
2326CebpaCCAAT/enhancer binding protein alpha18775963187762303Rat
67396Ceacam1CEA cell adhesion molecule 118104359581060050Rat
619960Prxperiaxin18278508282807154Rat
2169Atp1a3ATPase Na+/K+ transporting subunit alpha 318057279080601936Rat
2177Atp4aATPase H+/K+ transporting subunit alpha18596160785974972Rat
619905Slc7a9solute carrier family 7 member 918810951788132653Rat
61951Lgals7galectin 718414861284152016Rat
70971Hamphepcidin antimicrobial peptide18617092686172865Rat
61982Hpnhepsin18633708586352785Rat
69306Fxyd1FXYD domain-containing ion transport regulator 118628716386291478Rat
2134Apoc1apolipoprotein C117934705779350340Rat
619729Lrp3LDL receptor related protein 318784381587859147Rat
61868Dpf1double PHD fingers 118460221284615954Rat
620028AxlAxl receptor tyrosine kinase18126508881296278Rat
3035Magmyelin-associated glycoprotein18614822786163726Rat
69353Ech1enoyl-CoA hydratase 118411449484120788Rat
3003Lgals4galectin 418412476684132481Rat
68440Rps19ribosomal protein S1918048071880486511Rat
2330CebpgCCAAT/enhancer binding protein gamma18768306087692772Rat
2689Giprgastric inhibitory polypeptide receptor17880428778814462Rat
2196Bckdhabranched chain keto acid dehydrogenase E1 subunit alpha18113894681167765Rat
70959Apoc4apolipoprotein C417933574579339942Rat
620951Arhgef1Rho guanine nucleotide exchange factor 118049902680520954Rat
708435Ceacam4CEA cell adhesion molecule 418037666780382943Rat
631380Zfp180zinc finger protein 18017965244179672737Rat
631336Itpkcinositol-trisphosphate 3-kinase C18250095782522533Rat
621690Pou2f2POU class 2 homeobox 218068233080769756Rat
68378Bcambasal cell adhesion molecule (Lutheran blood group)17941501679429403Rat
2358Ckmcreatine kinase, M-type17906139079071721Rat
71059Hnrnplheterogeneous nuclear ribonucleoprotein L18409855884111568Rat
621432Klc3kinesin light chain 317904584279055809Rat
631376Egln2egl-9 family hypoxia-inducible factor 218245155482459809Rat
620830Fxyd7FXYD domain-containing ion transport regulator 718627767886286954Rat
620931Rab4bRAB4B, member RAS oncogene family18246139682472784Rat
69236Lsrlipolysis stimulated lipoprotein receptor18618576986201952Rat
620460Nphs1NPHS1 adhesion molecule, nephrin18572081285749079Rat
620150Gapdhsglyceraldehyde-3-phosphate dehydrogenase, spermatogenic18597909685994153Rat
621102Psmc4proteasome 26S subunit, ATPase 418334912783357497Rat
619823Xrcc1X-ray repair cross complementing 118014049580168705Rat
620722Zfp36zinc finger protein 3618366908483671564Rat
735035Lgi4leucine-rich repeat LGI family, member 418629453986305909Rat
620536Ppp1r14aprotein phosphatase 1, regulatory (inhibitor) subunit 14A18458312784590743Rat
620476Rasgrp4RAS guanyl releasing protein 418443303384452841Rat
2464Cyp2a2cytochrome P450, family 2, subfamily a, polypeptide 218226383382289487Rat
620975Usf2upstream transcription factor 2, c-fos interacting18617470386185942Rat
71086Krtdapkeratinocyte differentiation associated protein18603829686041594Rat
621450Kcnk6potassium two pore domain channel subfamily K member 618452561384533948Rat
2463Cyp2a1cytochrome P450, family 2, subfamily a, polypeptide 118223161182244887Rat
621205Zfp260zinc finger protein 26018533656785349896Rat
620506Gmfgglia maturation factor, gamma18372879783739189Rat
621476Kcnn4potassium calcium-activated channel subfamily N member 417995638079974354Rat
621481Sirt2sirtuin 218405388384076975Rat
2334Psg19pregnancy specific glycoprotein 1917842118378431449Rat
621429Pglyrp1peptidoglycan recognition protein 117853181578537001Rat
1304682Sptbn4spectrin, beta, non-erythrocytic 418265075082738345Rat
2135Apoc2apolipoprotein C217932942979334397Rat
2809Foxa3forkhead box A317866206778672321Rat
1304580Syne4spectrin repeat containing nuclear envelope family member 418556940985573775Rat
621002Rabac1Rab acceptor 118056402980567164Rat
1303245Rtn2reticulon 217893505678948069Rat
2270Capns1calpain, small subunit 118544461385454861Rat
2727Gpiglucose-6-phosphate isomerase18682821186856077Rat
628627Cyp2b3cytochrome P450, family 2, subfamily b, polypeptide 318165276281732153Rat
1307341Capn12calpain 1218417105984183161Rat
621554Hspb6heat shock protein family B (small) member 618580689885809072Rat
620595Zfp111zinc finger protein 11117976289779774274Rat
620597Plaurplasminogen activator, urokinase receptor18005344080068384Rat
621672Slc7a10solute carrier family 7 member 1018782908487845073Rat
621887NfkbibNFKB inhibitor beta18404629284053862Rat
620333Pafah1b3platelet-activating factor acetylhydrolase 1b, catalytic subunit 318088126380883789Rat
620883MiaMIA SH3 domain containing18247367782476378Rat
628613Ffar1free fatty acid receptor 118611136886112272Rat
708385Zfp382zinc finger protein 38218537761485400832Rat
69051Tgfb1transforming growth factor, beta 118119653281212848Rat
735174Cyp2b21cytochrome P450, family 2, subfamily b, polypeptide 2118188609781915066Rat
620862Sycnsyncollin18382383683833542Rat
620351Gsk3aglycogen synthase kinase 3 alpha18081584380825732Rat
1304722Cadm4cell adhesion molecule 418007516380097423Rat
621031Rps16ribosomal protein S1618364306683646056Rat
3010Lipelipase E, hormone sensitive type18096561280984313Rat
3813PvrPVR cell adhesion molecule17956129479576700Rat
620827Fxyd5FXYD domain-containing ion transport regulator 518626793786277329Rat
2138Apoeapolipoprotein E17935392479357852Rat
69257Aplp1amyloid beta precursor like protein 118569688085707215Rat
620086Cyp2t1cytochrome P450, family 2, subfamily t, polypeptide 118244632182451564Rat
621373Tex101testis expressed 10118025507680259442Rat
735199Yif1bYip1 interacting factor homolog B, membrane trafficking protein18453967384549906Rat
61816Actn4actinin alpha 418418278384251867Rat
2465Cyp2a3cytochrome P450, family 2, subfamily a, polypeptide 318217191482179980Rat
2466Cyp2b1cytochrome P450, family 2, subfamily b, polypeptide 118151838781544999Rat
735123Spint2serine peptidase inhibitor, Kunitz type, 218455815984580616Rat
621066Eml2EMAP like 217882759578859342Rat
1307416Snrpasmall nuclear ribonucleoprotein polypeptide A18248177082490540Rat
2476Cyp2f4cytochrome P450, family 2, subfamily f, polypeptide 418241610782429897Rat
1306078Cyp2s1cytochrome P450, family 2, subfamily s, polypeptide 118130994881325303Rat
70953Dll3delta like canonical Notch ligand 318356201183570008Rat
1306080Blvrbbiliverdin reductase B18273864682756312Rat
1306322Tshz3teashirt zinc finger homeobox 318938673289460719Rat
1306765Ggngametogenetin18447048884474120Rat
1304706Tmem147transmembrane protein 14718597702885978848Rat
1304707Lrfn1leucine rich repeat and fibronectin type III domain containing 118374244283761450Rat
1304717Cxcl17C-X-C motif chemokine ligand 1718098475180996842Rat
1305695Lsm14aLSM14A mRNA processing body assembly factor18696480087009325Rat
1305567Lrfn3leucine rich repeat and fibronectin type III domain containing 318561686285623725Rat
1306256Ttc9btetratricopeptide repeat domain 9B18295343482955659Rat
1306735Sympksymplekin scaffold protein17867237278700684Rat
1306992Ercc1ERCC excision repair 1, endonuclease non-catalytic subunit17897131079007963Rat
1307579NumblNUMB-like, endocytic adaptor protein18254981482573788Rat
1307456Hnrnpul1heterogeneous nuclear ribonucleoprotein U-like 118122840481264121Rat
1305757Zfp112zinc finger protein 11217967693379691994Rat
1307861Exosc5exosome component 518116812881177266Rat
1305025Zfp575zinc finger protein 57518017501680177176Rat
1307017Zfp507zinc finger protein 50718843578788468577Rat
1306219Paf1PAF1 homolog, Paf1/RNA polymerase II complex component18368365483689233Rat
1306221Mrps12mitochondrial ribosomal protein S1218402589684028896Rat
1302935Nudt19nudix hydrolase 1918821447588226072Rat
1307390Ccdc61coiled-coil domain containing 6117853749478557686Rat
1305040Six5SIX homeobox 517874081278745890Rat
1305542Fblfibrillarin18346983283478932Rat
1309505Nectin2nectin cell adhesion molecule 217937212379407379Rat
1305374B3gnt8UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 818113560281138501Rat
1307033Ltbp4latent transforming growth factor beta binding protein 418260013682634346Rat
1306786Rsph6aradial spoke head 6 homolog A17870080178720444Rat
1306714Wdr62WD repeat domain 6218549153185530643Rat
1306411WtipWT1 interacting protein18673121486764939Rat
1306386Ceacam16CEA cell adhesion molecule 16, tectorial membrane component17951497579524871Rat
1305597Samd4bsterile alpha motif domain containing 4B18368941383728652Rat
1305600U2af1l4U2 small nuclear RNA auxiliary factor 1-like 418581626885818462Rat
1307759Sdccag1-ps1serologically defined colon cancer antigen 1, pseudogene 118234191482345530Rat
1306761Prodh2proline dehydrogenase 218575355885767165Rat
1307223Dyrk1bdual specificity tyrosine phosphorylation regulated kinase 1B18347916883497011Rat
620825Fxyd3FXYD domain-containing ion transport regulator 318630553186312455Rat
1311107Irgcimmunity related GTPase cinema18002011480025797Rat
1311991ErfEts2 repressor factor18082993580838388Rat
1311610Cd22CD22 molecule18611637686132782Rat
1308428Garre1granule associated Rac and RHOG effector 118686212186939725Rat
1308935Gpatch1G patch domain containing 118792560687974544Rat
1311009Med29mediator complex subunit 2918367796183683365Rat
1308032Nova2NOVA alternative splicing regulator 217857225378613703Rat
1308308Fbxo17F-box protein 1718400227684024455Rat
1309147Opa3outer mitochondrial membrane lipid metabolism regulator OPA317887961278910453Rat
1308381Map3k10mitogen activated protein kinase kinase kinase 1018295578482974084Rat
1308393Fbxo46F-box protein 4617877005978786582Rat
620088Cyp2b12cytochrome P450, family 2, subfamily b, polypeptide 1218200760982019409Rat
1311906Fcgbpl1Fc fragment of IgG binding protein-like 118342478883462802Rat
1308312Irf2bp1interferon regulatory factor 2 binding protein 117865273678655437Rat
1311542Vaspvasodilator-stimulated phosphoprotein17891000978925791Rat
1311356Coq8bcoenzyme Q8B18252557882549182Rat
1310706Ciccapicua transcriptional repressor18085392080880537Rat
1308334Dpy19l3dpy-19 like C-mannosyltransferase 318835030388417339Rat
1311281Ceacam20CEA cell adhesion molecule 2017962207779643782Rat
1308128Qpctlglutaminyl-peptide cyclotransferase-like17878673078797956Rat
1312037Psenenpresenilin enhancer gamma secretase subunit18581490585816654Rat
1311432Sipa1l3signal-induced proliferation-associated 1 like 318461871484825956Rat
1308366Rhpn2rhophilin, Rho GTPase binding protein 218799114388051895Rat
1303022Tomm40translocase of outer mitochondrial membrane 4017935878179370882Rat
1311604Gpr4G protein-coupled receptor 417886537678877126Rat
1311531Scgb1b30secretoglobin, family 1B, member 3018671751086718775Rat
1309888Smg9SMG9 nonsense mediated mRNA decay factor17998854080011262Rat
1549778Sertad1SERTA domain containing 118277569282778961Rat
1311713Spred3sprouty-related, EVH1 domain containing 318445877984470425Rat
1309221Eif3keukaryotic translation initiation factor 3, subunit K18426012784270051Rat
1308901Lin37lin-37 DREAM MuvB core complex component18580906585813235Rat
1309965Tbcbtubulin folding cofactor B18547763985483488Rat
1305932Nccrp1NCCRP1, F-box associated domain containing18383508383838620Rat
1307541Hipk4homeodomain interacting protein kinase 418281070882821080Rat
1307554C1h19orf47similar to human chromosome 19 open reading frame 4718284430982871187Rat
1311420Zfp574zinc finger protein 57418066798480678257Rat
1309393Ccdc97coiled-coil domain containing 9718121922581227017Rat
1309395Polr2iRNA polymerase II subunit I18548351585484952Rat
1309849Upk1auroplakin 1A18585967285870147Rat
1306245Clip3CAP-GLY domain containing linker protein 318554717085563187Rat
1305463Map4k1mitogen activated protein kinase kinase kinase kinase 118427095184292496Rat
1310603Etv2ETS variant transcription factor 218589056285894025Rat
1305955Pop4POP4 homolog, ribonuclease P/MRP subunit19096002690968360Rat
1310959Clptm1CLPTM1 regulator of GABA type A receptor forward trafficking17928947879321079Rat
1310942Catspergcation channel sperm associated auxiliary subunit gamma18448872884519495Rat
1310112Plekhg2pleckstrin homology and RhoGEF domain containing G218365190283665063Rat
1308198FosbFosB proto-oncogene, AP-1 transcription factor subunit17895431278961492Rat
1310561Pdcd5programmed cell death 518830586988311200Rat
1308248Pld3phospholipase D family, member 318282186382844280Rat
1309109Ercc2ERCC excision repair 2, TFIIH core complex helicase subunit17903334279047102Rat
1309825DmpkDM1 protein kinase17873025578740585Rat
1307106Ankrd27ankyrin repeat domain 2718825121688303615Rat
1309842Psmd8proteasome 26S subunit, non-ATPase 818447437784481209Rat
1306184Rbm42RNA binding motif protein 4218589861885908569Rat
1310358Uri1URI1, prefoldin-like chaperone19064639290704811Rat
1307705Pak4p21 (RAC1) activated kinase 418384990483889188Rat
1307651CblcCbl proto-oncogene C17943997579456755Rat
1310133RinlRas and Rab interactor-like18407701184088590Rat
1310544Plekhf1pleckstrin homology and FYVE domain containing 119090830490915862Rat
1308055NfkbidNFKB inhibitor delta18567935385690415Rat
1311730Cep89centrosomal protein 8918805821188100114Rat
1308456Kirrel2kirre like nephrin family adhesion molecule 218570879385718670Rat
1309409Irgqimmunity-related GTPase Q18012392580131881Rat
1309281Shkbp1Sh3kbp1 binding protein 118263679782650330Rat
1309456Sars2seryl-tRNA synthetase 2, mitochondrial18402897284040725Rat
1309815Zfp84zinc finger protein 8418498735285015478Rat
1308979Chst8carbohydrate sulfotransferase 818729414487435900Rat
1563363Zfp536zinc finger protein 53619000035990463423Rat
1561430Abol1ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase like 118643908686442406Rat
1562941Cd177CD177 molecule18034003480360599Rat
1303117Fam98cfamily with sequence similarity 98, member C18445280684456414Rat
1564380Lypd10Ly6/PLAUR domain containing 1018027301980278238Rat
1561121Phldb3pleckstrin homology-like domain, family B, member 318020108380219541Rat
1563982Fbxo27F-box protein 2718396542683987781Rat
1560088Ndufb4l3NADH:ubiquinone oxidoreductase subunit B4 like 318747986787480354Rat
1563223Zfp74zinc finger protein 7418515815985183407Rat
1560430Zfp94zinc finger protein 9417985818879879702Rat
1564271Sertad3SERTA domain containing 318276353582767271Rat
1560188Zfp14ZFP14 zinc finger protein18526864985286125Rat
1562943Selenovselenoprotein V18355147383558756Rat
1562402Rpl27al3ribosomal protein L27A like 318956303489563540Rat
1563239Zfp566zinc finger protein 56618531844985342186Rat
1565655Cd177l2CD177 molecule like 218032318880328311Rat
1565712Proser3proline and serine rich 318579336385806682Rat
1560854Actmapactin maturation protease18249031382499841Rat
1359614Ffar2free fatty acid receptor 218607185586075049Rat
1311022Gramd1aGRAM domain containing 1A18636700186393348Rat
1560986RGD1560986similar to Gene model 108218576931785776345Rat
1562436Nanos2nanos C2HC-type zinc finger 217863566878637128Rat
1563574Igflr1IGF-like family receptor 118581842885821032Rat
1563577Cnfncornifelin18094969980953747Rat
1561337Epc2l1enhancer of polycomb homolog 2 (Drosophila)-like 118193196381934681Rat
1563807Supt5hSPT5 homolog, DSIF elongation factor subunit18358671383616971Rat
1311034Ethe1ETHE1, persulfide dioxygenase18018403780199092Rat
1311035Ffar3free fatty acid receptor 318610538886106728Rat
1562792Tdrd12tudor domain containing 1218813327188205729Rat
1312023Uba2ubiquitin-like modifier activating enzyme 218677523986802685Rat
1559509Znf568l-ps1zinc finger protein 568 like, pseudogene 118522979485231191Rat
1311676Tescltescalcin-like17989655479920998Rat
1549698Dmac2distal membrane arm assembly component 218112876081134810Rat
1549713Scgb1b24secretoglobin, family 1B, member 2418652134886522498Rat
1359238Hcsthematopoietic cell signal transducer18567697685679083Rat
1359129Scgb2b24-ps1secretoglobin, family 2B, member 24, pseudopgene 118670760286709529Rat
1564862Zfp428zinc finger protein 42818009952080108875Rat
1562091Ppm1nprotein phosphatase, Mg2+/Mn2+ dependent 1N17892935078934435Rat
1303081Tyrobptransmembrane immune signaling adaptor Tyrobp18567293185676856Rat
1560355Lypd5Ly6/Plaur domain containing 517992981879941791Rat
1549752Scgb2b2secretoglobin, family 2B, member 218652803586530028Rat
621190Megf8multiple EGF-like-domains 818090223680951614Rat
1560122Wdr88WD repeat domain 8818788431687924719Rat
1564719Faap24FA core complex associated protein 2418805152388057997Rat
1563843Zfp61zinc finger protein 6117985001379857993Rat
1560154Scgb2b24secretoglobin, family 2B, member 2418658150486582416Rat
1562305Sbsnsuprabasin18597897086006034Rat
1584238Rps24-ps2ribosomal protein S24, pseudogene 218543353585438711Rat
1583028Snrpgl1small nuclear ribonucleoprotein polypeptide G like 118798262987983056Rat
1583796Fam32al1family with sequence similarity 32, member A like 119107958991083390Rat
1583798Kpna3-ps1karyopherin subunit alpha 3, pseudogene 118666586186667440Rat
1583799Hsp90aa1-ps10heat shock protein 90 alpha family class A member 1, pseudogene 1018663359986636012Rat
1583800Ovol3ovo-like zinc finger 318548495685488592Rat
1583801Csde1-ps2cold shock domain containing E1, pseudogene 218305155483056439Rat
1583802Pgk1-ps6phosphoglycerate kinase 1, pseudogene 618234585682348568Rat
1564214Zfp108zinc finger protein 10817982044579827564Rat
1584097Cox6b1cytochrome c oxidase subunit 6B118587508085884081Rat
1586434Actg1-ps6actin, gamma 1, pseudogene 618565924485661088Rat
1564508MicbMHC class I polypeptide-related sequence B17849577978513030Rat
1563538ClasrpCLK4-associating serine/arginine rich protein17923226079256462Rat
1584667Lypd10l1Ly6/PLAUR domain containing 10 like 118030823480312967Rat
1584121Zbtb32zinc finger and BTB domain containing 3218584193185851116Rat
1583497Lypd4Ly6/Plaur domain containing 418046048780466105Rat
1561747Rgs9bpregulator of G protein signaling 9 binding protein18824943888250151Rat
1565160MypopMyb-related transcription factor, partner of profilin17863969978650555Rat
1566318Alkbh6alkB homolog 618556351185568977Rat
1563034ErflETS repressor factor like18052137880526262Rat
1565787Pinlypphospholipase A2 inhibitor and Ly6/Plaur domain containing18013464280140488Rat
1563307Setl2SET-like protein 218644948286450302Rat
1566122B9d2B9 domain containing 218118939581195383Rat
1564357Igsf23immunoglobulin superfamily, member 2317959105979606323Rat
1562079Sdhaf1succinate dehydrogenase complex assembly factor 118557620785577156Rat
15829832200002J24RiklRIKEN cDNA 2200002J24 gene like18592663885949890Rat
1593018Snrpd2small nuclear ribonucleoprotein D2 polypeptide17879837778801227Rat
1587684Timm50translocase of inner mitochondrial membrane 5018357487283582748Rat
1583737Kctd15potassium channel tetramerization domain containing 1518725865887271979Rat
1591403Zfp59zinc finger protein 5918330791683330139Rat
1589465Bcl3BCL3, transcription coactivator17947136879485908Rat
1593681Ppp1r13lprotein phosphatase 1, regulatory subunit 13 like17901099779030714Rat
1588959Zfp526zinc finger protein 52618080779180817852Rat
1583739Dmrtc2DMRT-like family C218046625980473883Rat
1585208C1h19orf12similar to human chromosome 19 open reading frame 1219087357890887205Rat
1589046Ifnl3interferon, lambda 318381445683816096Rat
1585397Rpsa-ps8ribosomal protein SA, pseudogene 818394033683942080Rat
1585399Acp7acid phosphatase 7, tartrate resistant18389648583923436Rat
1584032Zfp939zinc finger protein 93919112835691142632Rat
1583255Erich4glutamate-rich 418112355681125296Rat
1561521Dmkndermokine18601323786031243Rat
1589941Pdcd2lprogrammed cell death 2-like18681029286822554Rat
1584044Caap1-ps1caspase activity and apoptosis inhibitor 1, pseudogene 119106999391077845Rat
1584053C1h2orf78l1similar to human chromosome 2 open reading frame 78 like 119105646491063841Rat
1586637Ryr1ryanodine receptor 118429257884423824Rat
1585163Uqcrb-ps1ubiquinol-cytochrome c reductase binding protein, pseudogene 119101732891017808Rat
1595818Zfp296zinc finger protein 29617922864979231866Rat
1591760Nkpd1NTPase, KAP family P-loop domain containing 117916564279175126Rat
1594535Eif4g2-ps2eukaryotic translation initiation factor 4, gamma 2, pseudogene 218175467681757322Rat
1594536Wdr13-ps1WD repeat domain 13, pseudogene 117847144378473151Rat
1595416Prr19proline rich 1918088452980890712Rat
1597448Fam187bfamily with sequence similarity 187, member B18620523486219542Rat
1595911Tmem145transmembrane protein 14518089188880901615Rat
1596105Apbhandrogen-binding protein eta18658813786589425Rat
1594179DmwdDM1 locus, WD repeat containing17872243678729224Rat
1589436Ceacam19CEA cell adhesion molecule 1917954210779550927Rat
1596474Cyp2b15cytochrome P450, family 2, subfamily b, polypeptide 1518209418882106492Rat
1591707Polr1gRNA polymerase I subunit G17900749079010766Rat
1592570Zfp780bzinc finger protein 780B18305899383182629Rat
1588968Dedd2death effector domain containing 218078908480807789Rat
1591724Bloc1s3biogenesis of lysosomal organelles complex-1, subunit 317915587379158247Rat
1591735Trappc6atrafficking protein particle complex subunit 6A17915858779165502Rat
1591792Mark4microtubule affinity regulating kinase 417907535379108882Rat
1592539Exoc3l2exocyst complex component 3-like 217911378479145359Rat
1597035Gemin7gem (nuclear organelle) associated protein 717921505479228769Rat
1591322Eid2EP300 interacting inhibitor of differentiation 218353827483539599Rat
1594571Pepdpeptidase D18753665087681233Rat
1591916Mrpl32-ps1mitochondrial ribosomal protein L32, pseudogene 119079444290798694Rat
1595870Ppp1r37protein phosphatase 1, regulatory subunit 3717918079479212612Rat
1642421Ceacam6CEA cell adhesion molecule 618041653180434668Rat
2313189FcgbpFc gamma binding protein18337497983413082Rat
2319167C1h19orf33similar to human chromosome 19 open reading frame 3318454983084550666Rat
2318093Haus5HAUS augmin-like complex, subunit 518591237185924327Rat
2318912Rpl28l4ribosomal protein L28 like 418305631883056902Rat
2318958Zfp27zinc finger protein 2718511745585130578Rat
2317875Mir343microRNA 34317903845479038546Rat
2318374Arhgap33Rho GTPase activating protein 3318577611285789767Rat
2322813Cd177l1CD177 molecule like 118028819280293773Rat
2322934Cyp2b14l1cytochrome P450, family 2, subfamily b, polypeptide 14 like 118195835481963641Rat
2323012Srrm5serine/arginine repetitive matrix 518010304280104777Rat
2320881Rpl36l2ribosomal protein L36 like 218606252586062968Rat
2321719Zfp780b-ps1zinc finger protein 780B, pseudogene 118324779383265406Rat
2323115Cyp2s1-ps1cytochrome P450, family 2, subfamily s, polypeptide 1, pseudogene 118136736581368986Rat
2321078RelbRELB proto-oncogene, NF-kB subunit17925773879285490Rat
2323264Tmem91transmembrane protein 9118117948381187005Rat
2323829Zfp420zinc finger protein 42018509281085143682Rat
2323908Hnrnpk-ps7heterogeneous nuclear ribonucleoprotein K, pseudogene 717848529778491177Rat
2325620Mir330microRNA 33017883317878833274Rat
4888591Mir3569microRNA 356918584161685841691Rat
2325050Ddx18l1DEAD-box helicase 18 like 118531237185314713Rat
6484896Cd79aCD79a molecule18049358180497936Rat
6485475Zfp790l2zinc finger protein 790 like 218506943285086477Rat
6493325Ybx1-ps6Y box binding protein 1, pseudogene 618033332580334830Rat
6493686Ifnl1interferon, lambda 118379865183800297Rat
6487791Pmis2PMIS2 transmembrane protein18593122085931993Rat
6495874LOC100910905uncharacterized LOC10091090518724982587251590Rat
6502457Ccer2coiled-coil glutamate-rich protein 218404169784046225Rat
6499485Zfp82zinc finger protein 8218529146285311265Rat
6499588Znf599l-ps1zinc finger protein 599 like, pseudogene 118645346586484002Rat
6496527Cox7a1cytochrome c oxidase subunit 7A118542216285447530Rat
6500398Znf780bzinc finger protein 780B18300917483030463Rat
6501417Ube2n-ps3ubiquitin-conjugating enzyme E2N, pseudogene 318497185184972973Rat
7498933Znf235-ps1zinc finger protein 235, pseudogene 117979976679808543Rat
7527404Tmem258-ps4transmembrane protein 258, pseudogene 418280074582802399Rat
7528935Meiosinmeiosis initiator17874450478768104Rat
7529325Zfp94l1zinc finger protein 94 like 117988587579896601Rat
7536417Znf235zinc finger protein 23517969898979708439Rat
7516055Thap8l1THAP domain containing 8 like 118554017285543782Rat
7575422LOC102549611uncharacterized LOC10254961118326552583272948Rat
7575724LOC102555770uncharacterized LOC10255577018780385387811246Rat
7639269LOC102549342uncharacterized LOC10254934218098444181119329Rat
7627463Rpl4-ps4ribosomal protein L4, pseudogene 418505551685059159Rat
7642645LOC102550982uncharacterized LOC10255098218484938384870079Rat
7630088Zfp146zinc finger protein 14618540957085421835Rat
7588314LOC102553760zinc finger protein 59-like18320385083223665Rat
7598618LOC102548014uncharacterized LOC10254801419110575891128497Rat
7578509LOC102550499uncharacterized LOC10255049918416493284178207Rat
7579720Zfp780b-ps2zinc finger protein 780B, pseudogene 218309420783108245Rat
7604390LOC102555648uncharacterized LOC10255564818769952187729062Rat
7736402Sub1-ps1SUB1 regulator of transcription, pseudogene 117963377079634608Rat
7678027Kmt2blysine methyltransferase 2B18582170085840987Rat
7683572Zfp619l1zinc finger protein 619 like 119117169791198293Rat
7730631Fkbp1a-ps1FKBP prolyl isomerase 1A, pseudogene 117847001278471461Rat
7698003LOC102557319carcinoembryonic antigen-related cell adhesion molecule 3-like17843978478449990Rat
7698901LOC102554169uncharacterized LOC10255416918608184586086504Rat
7703231LOC102555707uncharacterized LOC10255570718779216987800501Rat
7710512Zfp619zinc finger protein 61919114801691167764Rat
9072276LOC103691054uncharacterized LOC10369105418072435880747156Rat
9082300LOC103689966MARCKS-related protein-like18491969884921260Rat
9160854LOC103691092cytochrome P450 2B9-like18179177681810482Rat
9168486Rpl13a-ps3ribosomal protein L13A, pseudogene 319103627891036843Rat
9215275LOC103691049uncharacterized LOC10369104917895617878957297Rat
9360878LOC103691073uncharacterized LOC10369107318216198182173209Rat
9381183Eid2bEP300 interacting inhibitor of differentiation 2B18354553083547338Rat
9264595LOC103691076uncharacterized LOC10369107618518319585194334Rat
9424195LOC103691074uncharacterized LOC10369107418294734882950417Rat
9431454LOC103691053uncharacterized LOC10369105317987972379894281Rat
9404051Cyp2b14cytochrome P450, family 2, subfamily b, polypeptide 1418206716082079597Rat
9407641Wdr87WD repeat domain 8718482628284845693Rat
11363847Zfp568zinc finger protein 56818520664385257759Rat
11367619Trnai-uau1transfer RNA isoleucine (anticodon UAU) 118366546483665557Rat
11358405LOC108349566uncharacterized LOC10834956619070689690740913Rat
11462101Rps23-ps12ribosomal protein S23, pseudogene 1218689675686902505Rat
11358633Trnat-agu1transfer RNA threonine (anticodon AGU) 118788302487883097Rat
11435664LOC10834943640S ribosomal protein S2 pseudogene18814039688141307Rat
11444414Hmgb1l1high mobility group box 1 like 117981517679816529Rat
11436011Zfp470zinc finger protein 47019106390591111883Rat
11446352LOC108349560uncharacterized LOC10834956018643130286436167Rat
11366552Gapdhl11glyceraldehyde-3-phosphate dehydrogenase like 1119094057290941452Rat
11438175LOC108348999uncharacterized LOC10834899917978909879799671Rat
11369943LOC108349556uncharacterized LOC10834955618041484680416174Rat
11399620LOC108349549uncharacterized LOC10834954918615001286151717Rat
11379739LOC108349564uncharacterized LOC10834956418938342289388116Rat
11390820LOC108349563uncharacterized LOC10834956318866079188701550Rat
11381349LOC108349450uncharacterized LOC10834945019091046590926453Rat
11393200LOC108349062uncharacterized LOC10834906217871240878722549Rat
11404862LOC108349512uncharacterized LOC10834951218396437183981022Rat
11502957LOC108349467uncharacterized LOC10834946718731898287324451Rat
11504974LOC108349103uncharacterized LOC10834910319008786390105749Rat
11514383LOC108349559uncharacterized LOC10834955918564530185648643Rat
11514392LOC10834984340S ribosomal protein S28 pseudogene18362115283621481Rat
41322932LOC120100155U6 spliceosomal RNA19106146191061567Rat
41383691Snu13-ps3small nuclear ribonucleoprotein 13, pseudogene 318306080883061157Rat
41169523LOC120099789uncharacterized LOC12009978918616126386163626Rat
41252116Rnu2-57RNA, U2 small nuclear 5718561811085618290Rat
41091792LOC120096895uncharacterized LOC12009689518096165580980582Rat
41259303LOC120100218U7 small nuclear RNA18331662183316684Rat
41148576LOC120100153U6 spliceosomal RNA18301264383012749Rat
41211843Trnag-acc6transfer RNA glycine (anticodon ACC) 617870434578704425Rat
41121395LOC120100461small nucleolar RNA SNORA4018364391983644044Rat
41265200LOC120097050uncharacterized LOC12009705018578996885800659Rat
41101381LOC120099779uncharacterized LOC12009977918257744282589999Rat
41194726LOC120099792uncharacterized LOC12009979218717541287176845Rat
41346041Rnu6-968RNA, U6 small nuclear 96819089044290890548Rat
41397435Trnas-aga27transfer RNA serine (anticodon AGA) 2718304842883048502Rat
41103001LOC120100175U6 spliceosomal RNA19051132190511424Rat
41348607Rpl14-ps3ribosomal protein L14, pseudogene 318256339182564154Rat
41292995LOC120096889uncharacterized LOC12009688918029278080294985Rat
41130624Rnu6-105RNA, U6 small nuclear 10518341819183418290Rat
41273648Trnaa-agc66transfer RNA alanine (anticodon AGC) 6618001474580014819Rat
41375603Ptma-ps5prothymosin alpha, pseudogene 518541440185414670Rat
41107959LOC120100450small nucleolar RNA SNORA1718786102287861136Rat
40976798Trnas-aga33transfer RNA serine (anticodon AGA) 3318702847987028559Rat
40977505Pym1-ps10PYM homolog 1, exon junction complex associated factor, pseudogene 1018037411580376604Rat
40980061Rnu6-826RNA, U6 small nuclear 82618546832585468431Rat
40932419LOC120100137U6 spliceosomal RNA18080331980803425Rat
40942253LOC120099791uncharacterized LOC12009979118696272486966447Rat
40942998Trnastop-ucatransfer RNA opal suppressor (anticodon UCA)17895260178952687Rat
40994558LOC120096885thymosin beta-4-like17966660579666715Rat
41313338LOC120100411small nucleolar RNA SNORA1718757426087574391Rat
41030208LOC120099776uncharacterized LOC12009977617852228578530274Rat
41052996LOC120100431U2 spliceosomal RNA18546031485460452Rat
41248459Rab12-ps1RAB12, member RAS oncogene family, pseudogene 117971533979717214Rat
41332531LOC120100477small nucleolar RNA SNORA1118675870286758828Rat
41144525LOC120099778small nuclear ribonucleoprotein G-like18258468782585068Rat
41258428LOC120096980uncharacterized LOC12009698018553610285547123Rat
41222147LOC120096893uncharacterized LOC12009689318129633481301538Rat
41300812LOC120100311U2 spliceosomal RNA18336327283363384Rat
41016838LOC120100358small nucleolar RNA SNORA518532302285323143Rat
41039507LOC120100209U7 small nuclear RNA19086153790861598Rat
41041613Rnu6-856RNA, U6 small nuclear 85619119747691197582Rat
41019110LOC120096890uncharacterized LOC12009689018029713180301947Rat
41021046LOC120099790uncharacterized LOC12009979018694152386954785Rat
150344952Zfp790zinc finger protein 420-like18503892385053325Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10334D1Wox1420617844904778449238Ratregion
10335D1Arb3632717843042478430754Ratregion
10442D1Wox1620018217474382174945Ratregion
10444D1Wox178118159422681594309Ratregion
10646D1Wox3011317880456978804684Ratregion
34332D1Mgh614518779014987790276Ratregion
36209D1Rat2616517962856179628731Ratregion
36273D1Rat9927818905327189053549Ratregion
37288D1Rat34121918830663588306864Ratregion
37544D1Rat20321118898261388982820Ratregion
37670D1Rat17720317905464279054836Ratregion
37772DXRat5327917953623479536294Ratregion
37946D1Rat22416718972270989722878Ratregion
36765D1Rat2715619050861490508767Ratregion
34795D1Rat9715718116945081169607Ratregion
34933D1Rat9615318088382080883973Ratregion
35793D1Rat2814518907980289079944Ratregion
35875D1Rat2315417897098378971139Ratregion
38172D1Rat41014918775862987758781Ratregion
38188D1Rat21316818177756481777720Ratregion
40570D1Rat33816718332223383322370Ratregion
40616D1Rat33617318296898282969157Ratregion
40730D1Rat26320018794395487944174Ratregion
38420D1Rat18920218758039587580595Ratregion
38792D1Rat13724519053233890532583Ratregion
39312D1Rat21220018542464785424821Ratregion
39312D1Rat21220018542464785424821Ratregion
39532D1Rat26114717944985479450011Ratregion
42083D1Arb3730819120930291209524Ratregion
41374D1Rat26515719066488390665040Ratregion
42470D1Rat48222218412116384121387Ratregion
42473D1Rat33717518285398182854144Ratregion
42475D1Rat41120318606848086068679Ratregion
42478D1Rat48422518609884386099084Ratregion
42478D1Rat48422518609886286099084Ratregion
41056D1Rat26418118778410587784288Ratregion
41684D1Rat34213418844032688440444Ratregion
41862D1Rat33914318096804280968185Ratregion
43238D1Got8017917916151379161692Ratregion
43239D1Got7821117844602878446238Ratregion
43240D1Got8211317996944679969559Ratregion
43243D1Got8417618130146681301642Ratregion
43247D1Got8126517911051279110777Ratregion
43251D1Got9318018380699483807174Ratregion
43252D1Got26215818281618982816347Ratregion
43256D1Got9216218756854087568702Ratregion
43257D1Got8610818592931385929421Ratregion
43260D1Got9110118819017988190280Ratregion
43262D1Got8723918603051086030749Ratregion
43266D1Got8919418830666388306859Ratregion
60234D1Got26314018756854187568681Ratregion
629597D1Hmgc415018151804381518167Ratregion
629597D1Hmgc415018159416281594314Ratregion
66566D1Mco1715618060257680602732Ratregion
66568D1Mco1826718595966485959931Ratregion
66586D1Mco2222318223024582230468Ratregion
66588D1Mco2410918218150282181611Ratregion
66589D1Mco2528918159195481592245Ratregion
67756D1Uwm113018374635683746486Ratregion
1632044D1Wox4345118181105481811509Ratregion
1579135D10Chm19621518712428287125603Ratregion
1629088D1Got38814818438800184388149Ratregion
1629436D1Wox7911318206640882066533Ratregion
1629590D1Wox6415817965245879652616Ratregion
1629655D1Wox8017018574770285747874Ratregion
1638959D1Got42827718626965386269931Ratregion
1633338D1Wox4819918151807081518269Ratregion
1633338D1Wox4819918159418981594416Ratregion
1635552D1Wox8322518775855587758780Ratregion
1636057D1Got39713818694496886945108Ratregion
1638364D1Wox709518160881581608910Ratregion
7205966Hpn7418633733686337410Ratregion
7191257Cebpa9918776057387760672Ratregion
7205854Ckm18917906999079071472Ratregion
5035917PMC307658P18518119676881196853Ratregion
5036025PMC94247P18218776068687760768Ratregion
5038964RH12743418018768422287684402Ratregion
7206254Ffar244318607288986073332Ratregion
7206594Dpf1103918461485884615897Ratregion
5036237D7Bwg0847e25218784163587841887Ratregion
5036404UniSTS:14381712918614850186148630Ratregion
5036543Xrcc115218016833580168582Ratregion
5039136RH12753321818841122788411445Ratregion
5036657AU04873624418996849889968742Ratregion
5036853AU04941923518103951781039752Ratregion
5037077WI-2252818017861026078610440Ratregion
5035576PITPN17018514974185149911Ratregion
5035727WI-1921125118234602182346272Ratregion
5031286PMC125755P119417906482779065021Ratregion
5033879RH14046121018010862580108835Ratregion
5033887RH14049521118248183382482044Ratregion
7205910Cox7a121818544263885443354Ratregion
7206176UniSTS:5324166617935472879355192Ratregion
5031400PMC15797P121618635409086354306Ratregion
5028841RH14253311818354627783546395Ratregion
5031624AU04769813918941212789412267Ratregion
5034277RH14203221818526983385270051Ratregion
5034277RH14203221818526983385270051Ratregion
5031808AU04707919718809077388090970Ratregion
5034488BF41578015318117960181180865Ratregion
5031934AU0466468818235471982354807Ratregion
5029347RH14445022517880450078804725Ratregion
5032089D7Mit1166418473731284737376Ratregion
5034774AI59965214518411080084111303Ratregion
5026774RH13347720518088129880881503Ratregion
5026820RH13365618118961577389615927Ratregion
5026842RH13373918018188621281886392Ratregion
5026894RH13393921418591239085912604Ratregion
5029468D1Bda1319918569717085697453Ratregion
5029514D1Bda522918096564980965878Ratregion
5029541BF41834316818582082585820993Ratregion
5026932RH13408920418108858681088843Ratregion
5026964RH13420621618282084682821062Ratregion
5026972RH13423618217988518579885367Ratregion
5027070SGC30851018293043582930690Ratregion
5032375AI84491513918556301085563149Ratregion
5032375AI84491513918556301085563149Ratregion
5027109WI-1380813018410576584105895Ratregion
5029777BI27814717118465518884655359Ratregion
5029879BE09723920118104450581044706Ratregion
5032565RH4636517618946035289460528Ratregion
5032573WI-1241712618088040980880535Ratregion
5032581HSC0TF11215118666398986664140Ratregion
5034868AI23517313118551111785511248Ratregion
5034868AI23517313118551111785511248Ratregion
5034880AI23528111318515847285158585Ratregion
5034974BMON11715718696559586965752Ratregion
5027333AW3243789018577641785776507Ratregion
5029997BI27946324418671770186718694Ratregion
5030021BF40077711517917190179172016Ratregion
5032711RH13501718518569701185697196Ratregion
5035250BM38510618518420727084207455Ratregion
5027525AW55544810317971657579716678Ratregion
5027567SHGC-152201018694502486945110Ratregion
5027567SHGC-152201018694503086945110Ratregion
5030211AW53212417417878582878786002Ratregion
5032945RH13705418118830593288306369Ratregion
5032979RH13718419018946035089460540Ratregion
5024952Cebpa64018775976187760401Ratregion
5025030RH12686123717870032578700669Ratregion
5027603BB02640913118318377583183906Ratregion
5027687WI-1237212218068234480682466Ratregion
5027737STS-T2652217118334915483349325Ratregion
5033155RH13780124518353917083539415Ratregion
5027807RH9482011518293264782932762Ratregion
5025444RH12833921218368892783689139Ratregion
5028061U0166317518617500486175179Ratregion
5030563AA9553679218341297483413066Ratregion
5030563AA9553679218346269483462786Ratregion
5025454RH12838021718677546486775681Ratregion
5025454RH12838021718677546486775681Ratregion
5025600RH12894519118001105080011241Ratregion
5025726RH12942218318499979184999974Ratregion
5028283D7Mit2276418926736089267424Ratregion
5028340RH7911913318083094880831081Ratregion
5028352D3S354210317983080979830912Ratregion
5028354D1S286227518321236183212636Ratregion
5031005BF40572017418254427882544452Ratregion
5033689RH13975021518126586181266076Ratregion
5025874RH13002515318429231384292466Ratregion
5028470AI42633016518349675783496922Ratregion
5028472U8578614218635398286354124Ratregion
5031051AA95733119718293132582932499Ratregion
5051845RH9469110917843129378431402Ratregion
5051845RH9469110917844986278449971Ratregion
5051975RH9476723517935373779353972Ratregion
5055079RH14359413318637797986378112Ratregion
5051132RH13445819318079201280792205Ratregion
5051419M6236216618776185687762022Ratregion
5053479RH14267212217915603579156157Ratregion
5053581RH14273217818383432483834502Ratregion
5053679RH14278820218250968282509883Ratregion
5055943RH14409222118618928786189508Ratregion
5056147RH14421011917902429479024413Ratregion
5056223RH14425421218616935086169562Ratregion
5051639AI52879014118429260784292748Ratregion
5056881RH14463420918518022185180429Ratregion
5057071AI50127421717893276878932985Ratregion
5057127D1Bda1137518366949883669873Ratregion
5057137D1Bda1722019078224990782469Ratregion
5051987RH9477426118768601987686280Ratregion
5057125D1Bda1031518534642585346740Ratregion
5057129D1Bda1214118548430785484531Ratregion
5057129D1Bda1214118548430785484531Ratregion
5057131D1Bda1419618633710986337305Ratregion
5057310D1Bda416917947440079474569Ratregion
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5052939RH14236116718497195384972120Ratregion
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5050054RH13383618718553206085532247Ratregion
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5074592RH13810517919000184190002020Ratregion
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5065084AI04426218718556296485563151Ratregion
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5063098BE10712813717918087579181012Ratregion
5066358PMC164293P117818572469985724877Ratregion
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5066378AU04839213218082701480827144Ratregion
5061398BF39632921717985209779853346Ratregion
5061510BE10536918618630363386303819Ratregion
5082279BI27445220718104472181044928Ratregion
5087018AA95778112019000261390002733Ratregion
5087730Cd2212618611756186117687Ratregion
5087356AW53232513419062005790620191Ratregion
5087989Mag24418614842786148671Ratregion
5089153AU04898610718216436182164468Ratregion
5089189AU04900825118437401484375397Ratregion
5083315BF41768410218713736187137463Ratregion
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5088034Pafah1b318418088132080881504Ratregion
5089369AU04911513618195566081955798Ratregion
5089371AU04911624418798020687980450Ratregion
5083695BG38165924118098508480985325Ratregion
5084110AI17553110218318358083183682Ratregion
5084556AI17826820018611760586117805Ratregion
5084798AI10282219818412033684120682Ratregion
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5080894RH14184420118092108980921290Ratregion
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5086167BM38614217317954240679542579Ratregion
5081314RH14208915318334815783348310Ratregion
5084888AI23003520018805975888059958Ratregion
5086576BM38586019018700820187008391Ratregion
5081426AI54752019917844474078444939Ratregion
5085595AW53472712018436084784361386Ratregion
5085649BE10187516017988603479886194Ratregion
5081799BE11832319117847506478475255Ratregion
5085940BM38448719017984219179842381Ratregion
5085952BM39178817518586887485869049Ratregion
5085968BQ21091515018619190186192051Ratregion
5084008AA89406411118686219786862308Ratregion
5502920Pak486818385000183850869Ratregion
5503166ksks19537618582286085823236Ratregion
5503206ha1258018567002285670934Ratregion
5503815CLIPR-59__458680118556238385563184Ratregion
5503815CLIPR-59__458680118556238385563184Ratregion
5503817HNRPUL1__658182918122871881229547Ratregion
5503881POU2F238918069179080692179Ratregion
5504228RH9387512117872451278724633Ratregion
5504254G4266610917918453479184643Ratregion
5504294D6S1116E14818410804084108299Ratregion
5504911ha3298018118493081186620Ratregion
5504576PMC305797P147818768672687687204Ratregion
5505362Akt2106018293259582933655Ratregion
5505638UniSTS:487858018415762384158493Ratregion
5505636UniSTS:487837105018658138786582437Ratregion
5506080UniSTS:49830423318618750786187948Ratregion
5505716UniSTS:490533100218658143186582433Ratregion
5505909Axl10018126866381269324Ratregion
5506142UniSTS:4984526318119679981196862Ratregion
5506219Cyp2f228018241770682418074Ratregion
5506449UniSTS:48031933618057358980575216Ratregion
5506829G4640125318929297489293229Ratregion
5506787G4535920518965888789659092Ratregion
5507235G6796144418280354182803985Ratregion
5499609MARC_2763-2764:991933378:347418582280485823278Ratregion
5499935UniSTS:23565116818725894487259112Ratregion
5499939UniSTS:23564522018577705685777276Ratregion
5499603MARC_1767-1768:991931306:123718956326389563500Ratregion
5499929UniSTS:23561412017866248978662609Ratregion
5499931UniSTS:23563321018349670183496911Ratregion
5499933UniSTS:23564113618556289085563026Ratregion
5499933UniSTS:23564113618556289085563026Ratregion
5500505RH12659020117879983878801063Ratregion
5500859SHGC-74334163417990400579905639Ratregion
5500547RH13592317918365251883652697Ratregion
5500715RH9143814818426015584261631Ratregion
5503342Ckmm37117906483779066141Ratregion
5501239PMC164521P19518683029986831706Ratregion
5501451Tgfb125818121195081212696Ratregion
5501788MARC_12245-12246:1008698037:111818420118884201994Ratregion
5501671Dmpk22217873275278733320Ratregion
5501946MARC_20651-20652:1024691026:1136118385373283855093Ratregion
5502102MARC_4163-4164:996679454:142918578205985782488Ratregion
5505784UniSTS:49318599318353833583539328Ratregion
5506161UniSTS:49849554017887566178876201Ratregion
5506589ERCC110117900177079001871Ratregion
5501826MARC_14429-14430:1010078261:145518265078082651235Ratregion
5502060MARC_26184-26185:1030717529:118418347682883477961Ratregion
5502297RH12432430118122240581222963Ratregion
5502375RH12463619017904686479047054Ratregion
5502682Spint119218455847684559888Ratregion
5506779G452729818379836283798460Ratregion
5506779G452729818379836283798460Ratregion
5506779G452729818381633883816436Ratregion
5506779G452729818381633883816436Ratregion
5507227G6779743718242574382426180Ratregion
5507229G67801018265406082654309Ratregion
5502615RH12564215918581829685818455Ratregion
5502744ETHE110918019776480198264Ratregion
5502265RH12422511618447961484480891Ratregion
5502267RH12422410118359029383590488Ratregion
5502273RH1242568818412040284120638Ratregion
5502329RH12451819618686412786864323Ratregion
5502549RH12524011718245157882451695Ratregion
Position Markers

Flank 1: (D1Arb37)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2191,209,302 - 91,209,524 (+)MAPPER
Rnor_6.0194,909,507 - 94,909,728NCBI
Rnor_5.0196,008,597 - 96,008,818UniSTS
Celera185,540,341 - 85,540,562UniSTS
FHH x ACI Map148.9499RGD
FHH x ACI Map148.9499UniSTS
Cytogenetic Map1 RGD
Peak: (D1Rat212)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,424,647 - 85,424,821 (+)MAPPER
mRatBN7.2185,424,647 - 85,424,821 (-)MAPPER
Rnor_6.0191,091,986 - 91,092,159NCBI
Rnor_6.0188,634,585 - 88,634,758NCBI
Rnor_5.0189,791,366 - 89,791,539UniSTS
Rnor_5.0192,226,668 - 92,226,841UniSTS
Celera179,800,789 - 79,800,962UniSTS
RH 3.4 Map1850.1RGD
RH 3.4 Map1850.1UniSTS
RH 2.0 Map1535.4RGD
SHRSP x BN Map143.4099RGD
FHH x ACI Map145.8399RGD
Flank 2: (D1Arb36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2178,430,424 - 78,430,754 (+)MAPPER
Rnor_6.0179,689,436 - 79,689,765NCBI
Rnor_5.0180,946,064 - 80,946,391UniSTS
RGSC_v3.4178,134,192 - 78,134,522RGD
RGSC_v3.4178,153,000 - 78,153,323RGD
RGSC_v3.4178,134,193 - 78,134,522UniSTS
RGSC_v3.1178,231,111 - 78,231,434RGD
Celera172,898,072 - 72,898,401UniSTS
SHRSP x BN Map140.2499UniSTS
SHRSP x BN Map140.2499RGD
FHH x ACI Map140.1RGD
Cytogenetic Map1q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia2


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia2  Collagen induced arthritis QTL 2    Type II Collagen induced arthritis QTL 2  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene 934 known and 268 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Chrna7, Fcgrt, Ax1, Tgfb1, Gpi, Bax, Il4i1, Zfp36, Xrcc1, Gp49b, Il11 and Il16 as RA associated genes, Zfp36 and Xrcc1 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general F2 progeny homozygous for DA allele developed less severe arthritis than animals with one or two F344 alleles 61062