NAV2 (neuron navigator 2) - Rat Genome Database

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Gene: NAV2 (neuron navigator 2) Canis lupus familiaris
Analyze
Symbol: NAV2
Name: neuron navigator 2
RGD ID: 12308754
Description: ENCODES a protein that exhibits 3'-5' DNA helicase activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN cerebellar cortex development (ortholog); glossopharyngeal nerve development (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); Hirschsprung's disease (ortholog); FOUND IN extracellular matrix (inferred); interstitial matrix (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,458,280 - 42,181,227 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,458,984 - 42,177,813 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,930,438 - 41,658,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,575,579 - 43,302,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,581,349 - 43,300,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,906,748 - 42,305,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,760,150 - 42,480,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02142,137,560 - 42,861,640 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NAV2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,458,280 - 42,181,227 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,458,984 - 42,177,813 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,930,438 - 41,658,542 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,575,579 - 43,302,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,581,349 - 43,300,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,906,748 - 42,305,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,760,150 - 42,480,872 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02142,137,560 - 42,861,640 (+)NCBIUU_Cfam_GSD_1.0
NAV2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,345,236 - 20,121,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,350,724 - 20,121,601 (+)EnsemblGRCh38hg38GRCh38
GRCh371119,366,783 - 20,143,147 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361119,691,488 - 20,099,723 (+)NCBINCBI36Build 36hg18NCBI36
Build 341119,691,487 - 20,099,722NCBI
Celera1119,505,019 - 20,275,779 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1119,056,089 - 19,826,507 (+)NCBIHuRef
CHM1_11119,371,529 - 20,143,061 (+)NCBICHM1_1
T2T-CHM13v2.01119,465,285 - 20,242,238 (+)NCBIT2T-CHM13v2.0
Nav2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39748,608,796 - 49,259,838 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl748,558,464 - 49,259,838 (+)EnsemblGRCm39 Ensembl
GRCm38748,959,063 - 49,610,090 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl748,908,716 - 49,610,090 (+)EnsemblGRCm38mm10GRCm38
MGSCv37756,214,443 - 56,865,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36749,232,742 - 49,322,663 (+)NCBIMGSCv36mm8
Celera744,402,885 - 45,057,893 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.23NCBI
Nav2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81107,799,968 - 108,458,546 (+)NCBIGRCr8
mRatBN7.2198,957,629 - 99,322,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl198,663,759 - 99,322,337 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1104,312,514 - 104,676,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01112,784,424 - 113,148,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,106,631 - 106,470,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01104,575,765 - 104,941,554 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1104,576,589 - 104,941,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01105,340,947 - 105,994,390 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,041,044 - 99,410,077 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,329,852 - 99,330,326 (+)NCBI
Celera193,160,898 - 93,522,785 (+)NCBICelera
Cytogenetic Map1q22NCBI
Nav2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955476613,512 - 996,535 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955476614,215 - 996,450 (+)NCBIChiLan1.0ChiLan1.0
NAV2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2921,649,387 - 22,419,749 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11121,974,896 - 22,379,610 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01119,370,095 - 20,143,255 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11119,288,369 - 20,055,758 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1119,288,598 - 20,055,758 (+)Ensemblpanpan1.1panPan2
Nav2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,807,521 - 43,503,750 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936654740,194 - 1,119,067 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936654740,270 - 1,119,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl239,266,926 - 40,078,124 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1239,263,939 - 40,083,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2242,202,180 - 42,246,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAV2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,887,172 - 45,648,260 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,887,169 - 45,214,703 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038142,222,004 - 142,987,858 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,170,921 - 11,414,050 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476611,056,877 - 11,417,291 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NAV2
13250 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 1 2 2 5 2
Low 5 5 17 6 5 6 4 5 10 8 5 4
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003432936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005633755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038430698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038456017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038506023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038569253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038633444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_542530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000015561   ⟹   ENSCAFP00000014399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2141,458,984 - 42,177,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000015573   ⟹   ENSCAFP00000014409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2141,784,190 - 42,177,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078291   ⟹   ENSCAFP00000045779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2142,089,272 - 42,177,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000090289   ⟹   ENSCAFP00000061709
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2141,874,181 - 42,177,813 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845034789   ⟹   ENSCAFP00845027247
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,581,349 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035176   ⟹   ENSCAFP00845027534
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,903,083 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845035703   ⟹   ENSCAFP00845027932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,903,083 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845036026   ⟹   ENSCAFP00845028196
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,903,083 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845036383   ⟹   ENSCAFP00845028480
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,968,365 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845036656   ⟹   ENSCAFP00845028691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2142,993,796 - 43,300,905 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845037048   ⟹   ENSCAFP00845029011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2143,210,904 - 43,300,905 (+)Ensembl
RefSeq Acc Id: XM_003432936   ⟹   XP_003432984
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,784,346 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,260,448 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633751   ⟹   XP_005633808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,887 - 42,181,227 (+)NCBI
Dog10K_Boxer_Tasha2141,259,955 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633752   ⟹   XP_005633809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,887 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,259,955 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633753   ⟹   XP_005633810
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,886 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,259,955 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633754   ⟹   XP_005633811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,887 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,259,955 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005633755   ⟹   XP_005633812
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,887 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,259,955 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022407936   ⟹   XP_022263644
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12142,003,813 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,479,739 - 41,658,542 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038430690   ⟹   XP_038286618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,903,588 - 43,302,697 (+)NCBI
RefSeq Acc Id: XM_038430691   ⟹   XP_038286619
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,903,587 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430692   ⟹   XP_038286620
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,903,587 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430693   ⟹   XP_038286621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,904,078 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430694   ⟹   XP_038286622
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,903,587 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430695   ⟹   XP_038286623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,904,078 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430696   ⟹   XP_038286624
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,903,587 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430697   ⟹   XP_038286625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02142,575,579 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038430698   ⟹   XP_038286626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02143,123,696 - 43,299,314 (+)NCBI
RefSeq Acc Id: XM_038456017   ⟹   XP_038311945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2140,930,438 - 41,658,542 (+)NCBI
RefSeq Acc Id: XM_038506023   ⟹   XP_038361951
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12141,906,748 - 42,305,151 (+)NCBI
RefSeq Acc Id: XM_038569245   ⟹   XP_038425173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,357 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569246   ⟹   XP_038425174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,357 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569247   ⟹   XP_038425175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,357 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569248   ⟹   XP_038425176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,475 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569249   ⟹   XP_038425177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,357 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569250   ⟹   XP_038425178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,475 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569251   ⟹   XP_038425179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,462,357 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569252   ⟹   XP_038425180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,137,560 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038569253   ⟹   XP_038425181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02142,682,076 - 42,861,640 (+)NCBI
RefSeq Acc Id: XM_038633436   ⟹   XP_038489364
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,362 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633437   ⟹   XP_038489365
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,362 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633438   ⟹   XP_038489366
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,362 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633439   ⟹   XP_038489367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,854 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633440   ⟹   XP_038489368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,362 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633441   ⟹   XP_038489369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,854 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633442   ⟹   XP_038489370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,082,362 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633443   ⟹   XP_038489371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02141,760,150 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_038633444   ⟹   XP_038489372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02142,301,992 - 42,480,872 (+)NCBI
RefSeq Acc Id: XM_542530   ⟹   XP_542530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,784,346 - 42,177,813 (+)NCBI
Dog10K_Boxer_Tasha2141,260,448 - 41,658,542 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003432984 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633808 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633809 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633810 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633811 (Get FASTA)   NCBI Sequence Viewer  
  XP_005633812 (Get FASTA)   NCBI Sequence Viewer  
  XP_022263644 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286620 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038286626 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038361951 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038425181 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489364 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489365 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489366 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489367 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038489372 (Get FASTA)   NCBI Sequence Viewer  
  XP_542530 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000014399.5
  ENSCAFP00000014409.5
  ENSCAFP00000045779.1
  ENSCAFP00000061709.2
  ENSCAFP00000067766.1
  ENSCAFP00000068011.1
  ENSCAFP00000068347.1
  ENSCAFP00030034890.1
  ENSCAFP00030035149.1
  ENSCAFP00030035295.1
  ENSCAFP00040041019.1
  ENSCAFP00845027247
  ENSCAFP00845027247.1
  ENSCAFP00845027534
  ENSCAFP00845027534.1
  ENSCAFP00845027932
  ENSCAFP00845027932.1
  ENSCAFP00845028196
  ENSCAFP00845028196.1
  ENSCAFP00845028480.1
  ENSCAFP00845028691.1
  ENSCAFP00845029011.1
Reference Protein Sequences
RefSeq Acc Id: XP_005633808   ⟸   XM_005633751
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633809   ⟸   XM_005633752
- Peptide Label: isoform X2
- UniProtKB: A0A8I3P705 (UniProtKB/TrEMBL),   A0A8P0PGG9 (UniProtKB/TrEMBL),   A0A8C0P7U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633810   ⟸   XM_005633753
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633811   ⟸   XM_005633754
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P2L4 (UniProtKB/TrEMBL),   A0A8P0PHT2 (UniProtKB/TrEMBL),   A0A8C0P7U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005633812   ⟸   XM_005633755
- Peptide Label: isoform X7
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_542530   ⟸   XM_542530
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Z6V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003432984   ⟸   XM_003432936
- Peptide Label: isoform X6
- UniProtKB: A0A8C0Z6V8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022263644   ⟸   XM_022407936
- Peptide Label: isoform X9
- UniProtKB: A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000045779   ⟸   ENSCAFT00000078291
RefSeq Acc Id: ENSCAFP00000014399   ⟸   ENSCAFT00000015561
RefSeq Acc Id: ENSCAFP00000014409   ⟸   ENSCAFT00000015573
RefSeq Acc Id: ENSCAFP00000061709   ⟸   ENSCAFT00000090289
RefSeq Acc Id: XP_038361951   ⟸   XM_038506023
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038489371   ⟸   XM_038633443
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038489364   ⟸   XM_038633436
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038489365   ⟸   XM_038633437
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038489366   ⟸   XM_038633438
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038489368   ⟸   XM_038633440
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038489370   ⟸   XM_038633442
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038489367   ⟸   XM_038633439
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038489369   ⟸   XM_038633441
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038489372   ⟸   XM_038633444
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038286625   ⟸   XM_038430697
- Peptide Label: isoform X8
- UniProtKB: A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286619   ⟸   XM_038430691
- Peptide Label: isoform X2
- UniProtKB: A0A8I3P705 (UniProtKB/TrEMBL),   A0A8P0PGG9 (UniProtKB/TrEMBL),   A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286620   ⟸   XM_038430692
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286622   ⟸   XM_038430694
- Peptide Label: isoform X5
- UniProtKB: A0A8I3P2L4 (UniProtKB/TrEMBL),   A0A8P0PHT2 (UniProtKB/TrEMBL),   A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286624   ⟸   XM_038430696
- Peptide Label: isoform X7
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286618   ⟸   XM_038430690
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286621   ⟸   XM_038430693
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Z6V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286623   ⟸   XM_038430695
- Peptide Label: isoform X6
- UniProtKB: A0A8C0Z6V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286626   ⟸   XM_038430698
- Peptide Label: isoform X9
- UniProtKB: A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311945   ⟸   XM_038456017
- Peptide Label: isoform X8
- UniProtKB: A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425180   ⟸   XM_038569252
- Peptide Label: isoform X8
- UniProtKB: A0A8C0P2Z4 (UniProtKB/TrEMBL),   A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425173   ⟸   XM_038569245
- Peptide Label: isoform X1
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425174   ⟸   XM_038569246
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425175   ⟸   XM_038569247
- Peptide Label: isoform X3
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425177   ⟸   XM_038569249
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425179   ⟸   XM_038569251
- Peptide Label: isoform X7
- UniProtKB: A0A8C0P7U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425176   ⟸   XM_038569248
- Peptide Label: isoform X4
- UniProtKB: A0A8C0Z6V8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425178   ⟸   XM_038569250
- Peptide Label: isoform X6
- UniProtKB: A0A8C0PDZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038425181   ⟸   XM_038569253
- Peptide Label: isoform X9
- UniProtKB: A0A8C0P2Z4 (UniProtKB/TrEMBL),   A0A8I3PAE1 (UniProtKB/TrEMBL),   A0A8P0SEX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845028480   ⟸   ENSCAFT00845036383
RefSeq Acc Id: ENSCAFP00845028196   ⟸   ENSCAFT00845036026
RefSeq Acc Id: ENSCAFP00845027534   ⟸   ENSCAFT00845035176
RefSeq Acc Id: ENSCAFP00845029011   ⟸   ENSCAFT00845037048
RefSeq Acc Id: ENSCAFP00845027932   ⟸   ENSCAFT00845035703
RefSeq Acc Id: ENSCAFP00845027247   ⟸   ENSCAFT00845034789
RefSeq Acc Id: ENSCAFP00845028691   ⟸   ENSCAFT00845036656
Protein Domains
AAA+ ATPase   Calponin-homology (CH)

Promoters
RGD ID:13687272
Promoter ID:EPDNEW_C5340
Type:initiation region
Name:NAV2_2
Description:neuron navigator 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C5341  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,419 - 41,783,479EPDNEW
RGD ID:13687275
Promoter ID:EPDNEW_C5341
Type:multiple initiation site
Name:NAV2_1
Description:neuron navigator 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C5340  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12141,783,537 - 41,783,597EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009777 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019092 UniProtKB/TrEMBL
  ENSCAFG00040024526 UniProtKB/TrEMBL
  ENSCAFG00845019323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000015561.6 UniProtKB/TrEMBL
  ENSCAFT00000015573.6 UniProtKB/TrEMBL
  ENSCAFT00000078291.2 UniProtKB/TrEMBL
  ENSCAFT00000090289.2 UniProtKB/TrEMBL
  ENSCAFT00000100272.1 UniProtKB/TrEMBL
  ENSCAFT00000104198.1 UniProtKB/TrEMBL
  ENSCAFT00000105714.1 UniProtKB/TrEMBL
  ENSCAFT00030039988.1 UniProtKB/TrEMBL
  ENSCAFT00030040277.1 UniProtKB/TrEMBL
  ENSCAFT00030040439.1 UniProtKB/TrEMBL
  ENSCAFT00040046987.1 UniProtKB/TrEMBL
  ENSCAFT00845034789 ENTREZGENE
  ENSCAFT00845034789.1 UniProtKB/TrEMBL
  ENSCAFT00845035176 ENTREZGENE
  ENSCAFT00845035176.1 UniProtKB/TrEMBL
  ENSCAFT00845035703 ENTREZGENE
  ENSCAFT00845035703.1 UniProtKB/TrEMBL
  ENSCAFT00845036026 ENTREZGENE
  ENSCAFT00845036026.1 UniProtKB/TrEMBL
  ENSCAFT00845036383.1 UniProtKB/TrEMBL
  ENSCAFT00845036656.1 UniProtKB/TrEMBL
  ENSCAFT00845037048.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene NAV2 ENTREZGENE
PANTHER NEURON NAVIGATOR 2 UniProtKB/TrEMBL
  PTHR12784 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0P2Z4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P7U3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PDZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z6V8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P2L4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P705 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PAE1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PDI1_CANLF UniProtKB/TrEMBL
  A0A8I3PHQ8_CANLF UniProtKB/TrEMBL
  A0A8I3PJJ9_CANLF UniProtKB/TrEMBL
  A0A8I3S4K6_CANLF UniProtKB/TrEMBL
  A0A8P0NC43_CANLF UniProtKB/TrEMBL
  A0A8P0NW22_CANLF UniProtKB/TrEMBL
  A0A8P0PAI6_CANLF UniProtKB/TrEMBL
  A0A8P0PGG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PGV6_CANLF UniProtKB/TrEMBL
  A0A8P0PHT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SEX3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43630 ENTREZGENE