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Gene: Sv2b (synaptic vesicle glycoprotein 2b) Rattus norvegicus

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Symbol:

Sv2b

Name:

synaptic vesicle glycoprotein 2b

RGD ID:

619716

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in regulation of presynaptic cytosolic calcium ion concentration and regulation of synaptic vesicle exocytosis. Located in synaptic vesicle. Is active in glutamatergic synapse and synaptic vesicle membrane. Orthologous to human SV2B (synaptic vesicle glycoprotein 2B); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

synaptic vesicle glycoprotein 2 b; synaptic vesicle protein 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SV2B (synaptic vesicle glycoprotein 2B)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Sv2b (synaptic vesicle glycoprotein 2b)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sv2b (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SV2B (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SV2B (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sv2b (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SV2B (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SV2B (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sv2b (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sv2b (synaptic vesicle glycoprotein 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sv2b (synaptic vesicle glycoprotein 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SV2B (synaptic vesicle glycoprotein 2B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sv2bb (synaptic vesicle glycoprotein 2Bb)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sv2ba (synaptic vesicle glycoprotein 2Ba)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sv2ba (synaptic vesicle glycoprotein 2Ba)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3168	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sv2b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sv2b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	138,388,268 - 138,562,635 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	138,388,266 - 138,562,258 (-)	Ensembl				GRCr8
mRatBN7.2	1	128,978,471 - 129,152,479 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	128,978,473 - 129,152,479 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	136,896,702 - 137,070,712 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	144,066,885 - 144,240,909 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	136,959,578 - 137,133,094 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	136,664,199 - 136,842,247 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	136,664,204 - 136,842,247 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	137,657,432 - 137,833,134 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	130,683,155 - 130,884,752 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	121,088,853 - 121,261,754 (-)	NCBI		Celera
RGSC_v3.1	1	130,821,099 - 130,963,095 (-)	NCBI
Cytogenetic Map	1	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

kidney disease (ISO)

prostate cancer (ISO)

spinal muscular atrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

Cuprizon (EXP)

dibutyl phthalate (EXP)

dichlorine (EXP)

ethanol (ISO)

fenamidone (ISO)

fenvalerate (EXP)

fonofos (ISO)

genistein (ISO)

lead(0) (ISO)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

N-nitrosodiethylamine (EXP)

okadaic acid (ISO)

ozone (EXP)

paracetamol (ISO)

paraquat (ISO)

parathion (ISO)

poly(vinylpyrrolidone) (EXP)

progesterone (EXP)

resveratrol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

saquinavir (ISO)

silicon dioxide (EXP)

silver atom (EXP)

silver(0) (EXP)

sodium arsenite (ISO)

sulforaphane (ISO)

terbufos (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

zalcitabine (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chemical synaptic transmission (IEA)

neurotransmitter transport (IEA)

neurotransmitter uptake (TAS)

regulation of presynaptic cytosolic calcium ion concentration (IBA,IEA,ISO)

regulation of synaptic vesicle exocytosis (IBA,IEA,ISO)

transmembrane transport (IEA)

Cellular Component

acrosomal vesicle (IEA)

cytoplasmic vesicle (IEA)

glutamatergic synapse (IDA)

membrane (IEA)

synaptic vesicle (IDA,IEA,ISO)

synaptic vesicle membrane (EXP,IBA,IDA,IEA)

terminal bouton (HDA)

Molecular Function

protein binding (IPI,ISO)

transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Brain contains two forms of synaptic vesicle protein 2.	Bajjalieh SM, etal., Proc Natl Acad Sci U S A 1993 Mar 15;90(6):2150-4.
2.	Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
3.	Analysis of Synaptotagmin, SV2, and Rab3 Expression in Cortical Glutamatergic and GABAergic Axon Terminals.	Bragina L, etal., Front Cell Neurosci. 2012 Jan 10;5:32. doi: 10.3389/fncel.2011.00032. eCollection 2011.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Identification of a new synaptic vesicle protein 2B mRNA transcript which is up-regulated in neurons by amyloid beta peptide fragment (1-42).	Heese K, etal., Biochem Biophys Res Commun 2001 Dec 21;289(5):924-8.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	SV2A and SV2C contain a unique synaptotagmin-binding site.	Schivell AE, etal., Mol Cell Neurosci. 2005 May;29(1):56-64. doi: 10.1016/j.mcn.2004.12.011.
13.	Synaptotagmin-2, and -1, linked to neurotransmission impairment and vulnerability in Spinal Muscular Atrophy.	Tejero R, etal., Hum Mol Genet. 2016 Aug 29. pii: ddw297.
14.	Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins.	Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.

Additional References at PubMed

PMID:8889548	PMID:9648885	PMID:9801366	PMID:10625067	PMID:10747945	PMID:12060780	PMID:12687700	PMID:12754292	PMID:16306227	PMID:16543415	PMID:18524768	PMID:22871113
PMID:23167466	PMID:28131823	PMID:29476059	PMID:34435329

Genomics

Comparative Map Data

Sv2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	138,388,268 - 138,562,635 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	138,388,266 - 138,562,258 (-)	Ensembl				GRCr8
mRatBN7.2	1	128,978,471 - 129,152,479 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	128,978,473 - 129,152,479 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	136,896,702 - 137,070,712 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	144,066,885 - 144,240,909 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	136,959,578 - 137,133,094 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	136,664,199 - 136,842,247 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	136,664,204 - 136,842,247 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	137,657,432 - 137,833,134 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	130,683,155 - 130,884,752 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	121,088,853 - 121,261,754 (-)	NCBI		Celera
RGSC_v3.1	1	130,821,099 - 130,963,095 (-)	NCBI
Cytogenetic Map	1	q31	NCBI

SV2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	91,099,588 - 91,302,565 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	91,099,869 - 91,302,565 (+)	Ensembl			hg38	GRCh38
GRCh37	15	91,642,818 - 91,845,795 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	89,570,107 - 89,639,654 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	15	89,444,548 - 89,639,514	NCBI
Celera	15	68,053,643 - 68,255,113 (+)	NCBI		Celera
Cytogenetic Map	15	q26.1	NCBI
HuRef	15	67,755,090 - 67,956,780 (+)	NCBI		HuRef
CHM1_1	15	91,484,697 - 91,686,166 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	88,860,310 - 89,063,343 (+)	NCBI		T2T-CHM13v2.0

Sv2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	74,764,642 - 74,959,143 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	74,764,642 - 74,959,010 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	75,114,894 - 75,309,262 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	75,114,894 - 75,309,262 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	82,259,780 - 82,454,148 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	74,988,407 - 75,080,208 (-)	NCBI		MGSCv36	mm8
Celera	7	72,579,539 - 72,767,752 (-)	NCBI		Celera
Cytogenetic Map	7	D1	NCBI
cM Map	7	43.62	NCBI

Sv2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	19,577,275 - 19,651,295 (+)	Ensembl
ChiLan1.0	NW_004955416	19,456,414 - 19,650,782 (+)	NCBI	ChiLan1.0	ChiLan1.0

SV2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	80,654,440 - 80,849,933 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	84,352,822 - 84,550,591 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	69,793,642 - 69,989,339 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	88,989,560 - 89,184,370 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	89,114,744 - 89,184,370 (+)	Ensembl			panPan2	panpan1.1

SV2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	48,694,905 - 48,870,157 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	48,697,293 - 48,827,194 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	51,336,197 - 51,509,930 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	49,117,185 - 49,290,983 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	49,117,943 - 49,289,778 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	48,618,333 - 48,792,169 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	48,844,324 - 49,018,092 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	49,190,330 - 49,363,923 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sv2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	134,786,121 - 134,957,039 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936483	11,377,442 - 11,450,830 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936483	11,377,375 - 11,450,830 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SV2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	87,568,026 - 87,766,335 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	87,564,380 - 87,767,247 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	93,628,605 - 93,828,482 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SV2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	9,691,421 - 9,875,657 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	9,806,570 - 9,872,782 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	36,826,711 - 37,003,073 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sv2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	12,425,890 - 12,509,901 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624768	12,426,232 - 12,621,852 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sv2b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	125,335,326 - 125,408,225 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sv2b
939 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	408
Count of miRNA genes:	235
Interacting mature miRNAs:	300
Transcripts:	ENSRNOT00000015084
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	131179947	176179947	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	137611478	182611478	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	132760429	191848948	Rat
631684	Bp117	Blood pressure QTL 117	8.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	120082258	165082258	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	112521556	157521556	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
631570	Bp94	Blood pressure QTL 94		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132889797	152403053	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760602	142582180	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	124975316	152612788	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	131243790	176243790	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	111404407	142582336	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	129182274	174182274	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	132760429	191848948	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	176289080	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	128019551	173019551	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	108680016	153680016	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	178317588	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	112521556	157521556	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	111949780	160574007	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	180021436	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	191190115	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	152404087	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	132760429	191848948	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat

Markers in Region

D1Rat349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	138,466,843 - 138,467,015 (+)	Marker Load Pipeline
Rnor_6.0	1	136,742,822 - 136,742,994	NCBI	Rnor6.0
Rnor_5.0	1	137,735,464 - 137,735,636	UniSTS	Rnor5.0
RGSC_v3.4	1	130,788,605 - 130,788,777	UniSTS	RGSC3.4
RGSC_v3.4	1	130,788,605 - 130,788,775	RGD	RGSC3.4
Celera	1	121,166,352 - 121,166,524	UniSTS
RGSC_v3.1	1	130,866,948 - 130,867,118	RGD
RH 3.4 Map	1	1012.3	UniSTS
RH 3.4 Map	1	1012.3	RGD
RH 2.0 Map	1	660.7	RGD
SHRSP x BN Map	1	65.4199	RGD
Cytogenetic Map	1	q31	UniSTS

RH134242

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	128,978,627 - 128,978,819 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	136,664,354 - 136,664,545	NCBI	Rnor6.0
Rnor_5.0	1	137,657,585 - 137,657,776	UniSTS	Rnor5.0
RGSC_v3.4	1	130,683,308 - 130,683,499	UniSTS	RGSC3.4
Celera	1	121,089,006 - 121,089,197	UniSTS
RH 3.4 Map	1	1013.2	UniSTS
Cytogenetic Map	1	q31	UniSTS

BE119178

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	128,980,188 - 128,980,338 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	136,665,915 - 136,666,064	NCBI	Rnor6.0
Rnor_5.0	1	137,659,146 - 137,659,295	UniSTS	Rnor5.0
RGSC_v3.4	1	130,684,869 - 130,685,018	UniSTS	RGSC3.4
Celera	1	121,090,567 - 121,090,716	UniSTS
RH 3.4 Map	1	1010.1	UniSTS
Cytogenetic Map	1	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	51	153	65	64	33	92	33	6	298	176	11	132	71	91	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_057207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI716529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF285601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG671769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB609053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO402345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ819365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV721065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L10362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	138,388,266 - 138,562,258 (-)	Ensembl
mRatBN7.2 Ensembl	1	128,978,473 - 129,152,479 (-)	Ensembl
Rnor_6.0 Ensembl	1	136,664,204 - 136,842,247 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	136,699,202 - 136,841,608 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	136,665,741 - 136,691,163 (-)	Ensembl

RefSeq Acc Id:

NM_057207 ⟹ NP_476555

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,562,258 (-)	NCBI
mRatBN7.2	1	128,978,475 - 129,152,479 (-)	NCBI
Rnor_6.0	1	136,664,201 - 136,842,247 (-)	NCBI
Rnor_5.0	1	137,657,432 - 137,833,134 (-)	NCBI
RGSC_v3.4	1	130,683,155 - 130,884,752 (-)	RGD
Celera	1	121,088,853 - 121,261,754 (-)	RGD

Sequence:

show sequence

AGCTACCCAGATCAACGGTGCTCTACCGCTGAATCGCTCGCTGCGGATTTTCCACCCAGGCCAC
AACCTTCAGTAGAAGGACAAACATCACAGCCAGTGAGCTGCCAAGCAGTGCTCCGACCGACCTT
GTCAAAGAGAGCAGCTGGTCCCAGTTTTAGTCAGCACCTCTCAGCATAAGTGTCTGGGTCACAG
AAGGAGAACAGGTCAACATTTCCAAAGACATTTAACACACCAGCACAAAAGGCTACTTAGGTTG
TCTTTGTATGAATTTGGTTGACTAGAGAAGTAAATTAAAAAGGTGCTTTGATTGAAGAAGTCAC
ATGGACATAATCACCATTTCAACAATATATTAGATGATGGTTATTGGAACAGCCCAAACATTTA
CCACAGAGCAAGAGATATAGCTTGAGTGGCTACTAGACTATTCCAGAATCAAGGAATGGATGAC
TACAGGTATCGGGACAACTATGAGGGCTATGCCCCTAATGATGGCTACTACCGGGGCAATGAGC
AGAACCCGGAAGAAGATGCACAGAGCGATGTTACAGAAGGCCACGATGAAGAGGATGAGATCTA
TGAGGGCGAGTACCAAGGCATCCCTCATCCAGATGATGTCAAGTCTAAGCAGACTAAGATGGCA
CCGTCCAGAGCAGATGGCCTTCGGGGCCAGGCAGACCTGATGGCTGAGAGAATGGAAGATGAGG
AGCAGCTCGCTCACCAGTACGAGACCATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTGGAC
CCTCTTTTTCGTCTTGGTCTTGGCCTTGATGGCTGACGGAGTGGAAGTGTTTGTGGTGAGCTTT
GCTCTGCCAAGTGCAGAGAAAGATATGTGTCTGTCAAGTTCCAAGAAAGGAATGCTCGGGCTGA
TTGTCTACCTAGGAATGATGGCAGGAGCCTTCATCCTGGGGGGCCTGGCTGATAAACTGGGAAG
GAAGAAGGTCCTCAGCATGTCCTTGGCTATCAATGCTTCCTTTGCCTCCCTCTCCTCCTTCGTG
CAGGGATATGGAGCTTTCCTCTTCTGCAGACTCATCTCAGGCATAGGTATTGGGGGCTCCCTGC
CAATTGTTTTTGCCTACTTTTCTGAGTTCTTATCACGGGAGAAACGCGGTGAGCATCTCAGCTG
GCTGGGTATCTTCTGGATGACTGGGGGCATCTACGCATCTGCCATGGCCTGGAGCATCATTCCA
CACTATGGCTGGGGCTTCAGCATGGGAACCAATTATCACTTCCACAGCTGGAGAGTGTTTGTCA
TCGTCTGTGCTCTGCCTGCCACTGTGTCCATGGTGGCCCTGAAGTTCATGCCAGAAAGCCCCAG
GTTCCTGCTGGAGATGGGCAAGCATGATGAAGCCTGGATGATTCTCAAGCAAGTCCATGACACC
AACATGAGAGCTAAGGGGACCCCTGAGAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAAGC
AAATGGATGAATTCATTGAGATCCAGAGTTCAACAGGGACTTGGTACCAGCGCTGGTTGGTCAG
GTTCATGACCATTTTCAAACAGGTGTGGGATAACGCCTTGTACTGTGTGATGGGACCCTACAGA
ATGAACACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTATGGCCTGACAG
TGTGGTTCCCCGACATGATCCGGTATTTCCAGGATGAAGAATATAAGTCTAAAATGAAGGTGTT
TTTTGGTGAGCACGTGCATGGCGCCACAATCAACTTCACCATGGAAAACCAGATCCACCAACAT
GGGAAGCTTGTGAACGATAAGTTCATAAAGATGTACTTTAAGCATGTCCTCTTTGAGGACACAT
TCTTTGACAAATGCTATTTTGAAGATGTGACATCCACAGATACTTATTTCAAGAACTGCACCAT
TGAATCGACTACCTTCTACAACACAGACCTCTACAAACACAAGTTCATTGACTGTCGGTTTATC
AATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAATGATTTTC
TGATTTACCTCGTCAGCTTCCTCGGCAGCCTGTCTGTCTTGCCTGGGAACATAATTTCTGCCCT
GCTCATGGACAGAATCGGAAGACTTAAGATGATTGGTGGCTCCATGCTCATCTCTGCAGTCTGC
TGCTTCTTCCTGTTTTTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTG
GGACCAGCATTGCAGCCTGGAATGCTCTGGATGTGATCACAGTAGAGCTGTATCCCACCAACCA
GAGGGCCACTGCCTTCGGCATCCTCAATGGACTGTGCAAACTTGGTGCCATCCTGGGAAACACT
ATCTTTGCTTCTTTTGTTGGGATCACCAAAGTGGTCCCCATCCTTCTGGCTGCTGCTTCTCTGG
TTGGAGGTGGCTTGGTTGCCCTTCGACTGCCAGAGACTCGAGAGCAGGTCCTGATGTGAACAGC
ACCGTGGGGAGAGGAAGATGGGAAGATCTTTTTTCAGGACACTTCAGCACAGCCACACCTCCTG
CCTCTCACTGTCCACAGGACACCACGGACAGCACAGAAGGAGAAATGGACTGTGTGATCCCTAG
TTTAGGACCCACTTCAGTTGTTAATACGTTTTTAACTCAGGTCATTGGCTAGGGGTGCCCAGAG
TCAACCTTAGGATCCCAGAGCTGTGCGCTTAGCTTCAGGTCTCTCGATCCAAGGCAGGGGGAGG
ACACTCCAGTAAATCCATATAGTAAGCAAGAAATTGCTTGCATTTCAGACTGACATTGAGGACA
AGAAACACTTAATCTCCTCTATGTAGCTTCTGGGAGCCCAGTGACCTAGCAGATTGCCTCAGTT
GGGAGTGGGATCAATACATAAATATCAGATTCACAGAACAGACTATATATTTGCATTTGAAAGT
ATCACCTATCATATTTTCCTTTTGAAAATTGGCACGGTAGTATTGAAGATACTCTGATATAGAA
AAACCCAATATTGAAGCAAAATGTATATAGACTGACTTTTCATCTCAAGCGTCCTGAACTTTGC
ACAAAGAAGAGGTGACACGTCAAGAGTGATATTTATTATGGTTTTGCTCTACTCAGAGACACTT
GAGGTTGGTTATTATGTAAACTATGTTTGTATATAGCAGTTTTGAGGTTTTATTCCCACAAATG
GTAGCTGCTAAGATTGCCAGCATTTTAGCCGAATTTGGGGAGAACTCGCCATTCAAGGTCCCAG
GAAACTGGTGCAAATGGATGATGTTTAAGCATGATGTCAGTGCAGCCATCTTGCCTGCTGTCAG
GAGGATGTACTTGGCAAGCCACATGCTATTTCCTTTACCTGGGAATTTTTCTTCAACTTGGTAG
GGCAGTTACTTTTCTCTCCAATGCTGATCGCTTGTGAAACTCAGGTCCATGGGTCGTTTGATGC
TGTTTACCCAGGAAGAACAGGAAGAAAGGTTTATTTTTATTTTTATTTTTTAATGGCTGCTTGC
ATTTTCCTTTTAAAGAAAAACAAAACAAAACAACACAGGTAACTGGCCAAGGATGGGAAAATGA
AATCACAGTTCTTCAAAGTGTGAGTCCTTACTGTTTGATTTCAAAGGAAAACACAATGCACTTT
TATTACAGCATTTAGGACCTATACGAAATTTATGCTCTATGTGCTGGCTCTGGGGTTTTGAAAT
GGGCCATTAGCATGCACGTTAGGAAATAAAAGGCACGAGATACATTCCTGTCTTCAGTGCTCCA
AGGAAGCTTTTCCTGAGATCCAGAATGGACTGTGAATGTGGAAATGGAAGGACTCAGGGCATAC
CATTCTGGCAGGTGTCAGCCATTTACCTGTAGTTTGGAGGCCATGGTGGGGTAGCAGCTTTTGT
TCATTAGAACCCTCTGGGATGGTAGAGACAGGGAGCCAGGGGTTCCTGCCACCTGAGCTGCACT
TGCCTGGGCCAGGGGAACATCTGACCATAAGAACTAGTTTGCTCACGCTATTCGCAGTACACAC
AAGAGTTGCAAAGTGCTAACCTTTGCCTATTAGAAACCCTCCCAAATCCAAGCCAAACTAATGG
CTACATTGAGTGTTTTCTCAGTTTTGTGGAAATAGTTAGATGCCAGGACAGTTCAAGCCATTTC
CCCCTAATCCTCTAGAATATAAGTCAGAGTGAAATTTTTGAGACCTTCCCATCTTCAAGTCTGG
CTAACGCATTTACTCTGCTTCTCTGGTTCCCACCTCTTTATCTATAACACATTACTTTCTGTAC
AGGGAAGGAAGATGCATCAGGTCTGATGTGATACCCCCATTCCCCCAAATATAAATATATATAA
ATATACAGAATGTATTCATGTTTCTCTCGGTGTTTTATAGGAATTAACTGATAATGCTCTGTTG
ATAATGAGAAACTTTCTGTAACATAGCTGTAACATCCTTTCCCATTTTCCTGTGATATGGAATG
CACTGGCTAGGGTCCTGAGAGAATCGTGTAAGTCTGTGGTTATAGATCCCCCATGACAGTATTC
TTTAATGGGATAATAGACCTCAGTGTGCAGTTACCACTCAAGAAGTGTACAAGAGAGTTAGAAT
CCACACTTACAGCCAGATATATCTTGTAAACTTAAAATCTGGTTAATTTTTTAAGCATAGGAGT
GGGTGGCTGCAGTCCTTTTAGGCTAACTGTACTTGGTTTCTGAGCTCTGTCTTCTACATTACAT
TTATGGCTCCTTAAACTGATTGCCTAACCAACCAAGGGCAATTCCCATCCATCCATCACATGGG
TTGTGGGAAGGATGCAGCCATGGTGTGCAGCTTCCTTCATGAAGGATTATCTGGCCATGGTACC
TGACTGCTTCATAACTTGCTGTCACTCTGGGTGAGATAATGTGTCTTTAAAAACAGTCCCTGTG
GCAGGTCACTGGGATATAATGTACAACATTCTTAGCCATCATTTCTTTTCTTTTTTTTTCTTTT
TTTTGTTTTGCCCTGAGAGACTCCCAGTGGTTTCTACTGAGGGCTAAAGGGACGAGCTGTTCCC
TCATTGAGCAAGACCGTTCGCTGTTCATGATGTGTTTTATGATGGCTTCTTTGGGAGTTGCTTC
TTCAACAGTCTCAACTGTGCTGTGGGATCTCCTGATGCTGACTTTTGACCTTTCGTTTTATTAA
AACTAATTAGTGAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008759492 ⟹ XP_008757714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,532,662 (-)	NCBI
mRatBN7.2	1	128,978,471 - 129,122,829 (-)	NCBI
Rnor_6.0	1	136,664,199 - 136,808,316 (-)	NCBI

Sequence:

show sequence

GGGGGAGGGCAAGCCGTGGGGAGGGAAACTGCGCAAGATTAGGTGTGTTCTCTCTAAACCCTGC
GGCAACCCTGTGAGAAAATCCTTCCCTGATGGCGGAAGTCCAGGCTCGGGGTGGGCCACAACCT
TCAGTAGAAGGACAAACATCACAGCCAGTGAGCTGCCAAGCAGTGCTCCGACCGACCTTGTCAA
AGAGAGCAGCTGGTCCCAGTTTTAGTCAGCACCTCTCAGCATAAGTGTCTGGGTCACAGAAGGA
GAACAGGTCAACATTTCCAAAGACATTTAACACACCAGCACAAAAGGCTACTTAGGTTGTCTTT
GTATGAATTTGGTTGACTAGAGAAGTAAATTAAAAAGGTGCTTTGATTGAAGAAGTCACATGGA
CATAATCACCATTTCAACAATATATTAGATGATGGTTATTGGAACAGCCCAAACATTTACCACA
GAGCAAGAGATATAGCTTGAGTGGCTACTAGACTATTCCAGAATCAAGGAATGGATGACTACAG
GTATCGGGACAACTATGAGGGCTATGCCCCTAATGATGGCTACTACCGGGGCAATGAGCAGAAC
CCGGAAGAAGATGCACAGAGCGATGTTACAGAAGGCCACGATGAGGAGGATGAGATCTATGAGG
GCGAGTACCAAGGCATCCCTCATCCAGATGATGTCAAGTCTAAGCAGACTAAGATGGCACCGTC
CAGAGCAGATGGCCTTCGGGGCCAGGCAGACCTGATGGCTGAGAGAATGGAAGATGAGGAGCAG
CTCGCTCACCAGTACGAGACCATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTGGACCCTCT
TTTTCGTCTTGGGTCTGGCCTTGATGGCTGACGGAGTGGAAGTGTTTGTGGTGAGCTTTGCTCT
GCCAAGTGCAGAGAAAGATATGTGTCTGTCAAGTTCCAAGAAAGGAATGCTCGGGCTGATTGTC
TACCTAGGAATGATGGCAGGAGCCTTCATCCTGGGGGGCCTGGCTGATAAACTGGGAAGGAAGA
AGGTCCTCAGCATGTCCTTGGCTATCAATGCTTCCTTTGCCTCCCTCTCCTCCTTCGTGCAGGG
ATATGGAGCTTTCCTCTTCTGCAGACTCATCTCAGGCATAGGTATTGGGGGCTCCCTGCCAATT
GTTTTTGCCTACTTTTCTGAGTTCTTATCACGGGAGAAACGCGGTGAGCATCTCAGCTGGCTGG
GTATCTTCTGGATGACTGGGGGCATCTACGCATCTGCCATGGCCTGGAGCATCATTCCACACTA
TGGCTGGGGCTTCAGCATGGGAACCAATTATCACTTCCACAGCTGGAGAGTGTTTGTCATCGTC
TGTGCTCTGCCTGCCACTGTGTCCATGGTGGCCCTGAAGTTCATGCCAGAAAGCCCCAGGTTCC
TGCTGGAGATGGGCAAGCATGATGAAGCCTGGATGATTCTCAAGCAAGTCCATGACACCAACAT
GAGAGCTAAGGGGACCCCTGAGAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATG
GATGAATTCATTGAGATCCAGAGTTCAACAGGGACTTGGTACCAGCGCTGGTTGGTCAGGTTCA
TGACCATTTTCAAACAGGTGTGGGATAACGCCTTGTACTGTGTGATGGGACCCTACAGAATGAA
CACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTATGGCCTGACAGTGTGG
TTCCCCGACATGATCCGGTATTTCCAGGATGAAGAATATAAGTCTAAAATGAAGGTGTTTTTTG
GTGAGCACGTGCATGGCGCCACAATCAACTTCACCATGGAAAACCAGATCCACCAACATGGGAA
GCTTGTGAACGATAAGTTCATAAAGATGTACTTTAAGCATGTCCTCTTTGAGGACACATTCTTT
GACAAATGCTATTTTGAAGATGTGACATCCACAGATACTTATTTCAAGAACTGCACCATTGAAT
CGACTACCTTCTACAACACAGACCTCTACAAACACAAGTTCATTGACTGTCGGTTTATCAATTC
CACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAATGATTTTCTGATT
TACCTCGTCAGCTTCCTCGGCAGCCTGTCTGTCTTGCCTGGGAACATAATTTCTGCCCTGCTCA
TGGACAGAATCGGAAGACTTAAGATGATTGGTGGCTCCATGCTCATCTCTGCAGTCTGCTGCTT
CTTCCTGTTTTTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACC
AGCATTGCAGCCTGGAATGCTCTGGATGTGATCACAGTAGAGCTGTATCCCACCAACCAGAGGG
CCACTGCCTTCGGCATCCTCAATGGACTGTGCAAACTTGGTGCCATCCTGGGAAACACTATCTT
TGCTTCTTTTGTTGGGATCACCAAAGTGGTCCCCATCCTTCTGGCTGCTGCTTCTCTGGTTGGA
GGTGGCTTGGTTGCCCTTCGACTGCCAGAGACTCGAGAGCAGGTCCTGATGTGAACAGCACCGT
GGGGAGAGGAAGATGGGAAGATCTTTTTTCAGGACACTTCAGCACAGCCACACCTCCTGCCTCT
CACTGTCCACAGGACACCACGGACAGCACAGAAGGAGAAATGGACTGTGTGATCCCTAGTTTAG
GACCCACTTCAGTTGTTAATACGTTTTTAACTCAGGTCATTGGCTAGGGGTGCCCAGAGTCAAC
CTTAGGATCCCAGAGCTGTGCGCTTAGCTTCAGGTCTCTCGATCCAAGGCAGGGGGAGGACACT
CCAGTAAATCCATATAGTAAGCAAGAAATTGCTTGCATTTCAGACTGACATTGAGGACAAGAAA
CACTTAATCTCCTCTATGTAGCTTCTGGGAGCCCAGTGACCTAGCAGATTGCCTCAGTTGGGAG
TGGGATCAATACATAAATATCAGATTCACAGAACAGACTATATATTTGCATTTGAAAGTATCAC
CTATCATATTTTCCTTTTGAAAATTGGCACGGTAGTATTGAAGATACTCTGATATAGAAAAACC
CAATATTGAAGCAAAATGTATATAGACTGACTTTTCATCTCAAGCGTCCTGAACTTTGCACAAA
GAAGAGGTGACACGTCAAGAGTGATATTTATTATGGTTTTGCTCTACTCAGAGACACTTGAGGT
TGGTTATTATGTAAACTATGTTTGTATATAGCAGTTTTGAGGTTTTATTCCCACAAATGGTAGC
TGCTAAGATTGCCAGCATTTTAGCCGAATTTGGGGAGAACTCGCCATTCAAGGTCCCAGGAAAC
TGGTGCAAATGGATGATGTTTAAGCATGATGTCAGTGCAGCCATCTTGCCTGCTGTCAGGAGGA
TGTACTTGGCAAGCCACATGCTATTTCCTTTACCTGGGAATTTTTCTTCAACTTGGTAGGGCAG
TTACTTTTCTCTCCAATGCTGATCGCTTGTGAAACTCAGGTCCATGGGTCGTTTGATGCTGTTT
ACCCAGGAAGAACAGGAAGAAAGGTTTATTTTTATTTTTATTTTTTAATGGCTGCTTGCATTTT
CCTTTTAAAGAAAAACAAAACAAAACAACACAGGTAACTGGCCAAGGATGGGAAAATGAAATCA
CAGTTCTTCAAAGTGTGAGTCCTTACTGTTTGATTTCAAAGGAAAACACAATGCACTTTTATTA
CAGCATTTAGGACCTATACGAAATTTATGCTCTATGTGCTGGCTCTGGGGTTTTGAAATGGGCC
ATTAGCATGCACGTTAGGAAATAAAAGGCACGAGATACATTCCTGTCTTCAGTGCTCCAAGGAA
GCTTTTCCTGAGATCCAGAATGGACTGTGAATGTGGAAATGGAAGGACTCAGGGCATACCATTC
TGGCAGGTGTCAGCCATTTACCTGTAGTTTGGAGGCCATGGTGGGGTAGCAGCTTTTGTTCATT
AGAACCCTCTGGGATGGTAGAGACAGGGAGCCAGGGGTTCCTGCCACCTGAGCTGCACTTGCCT
GGGCCAGGGGAACATCTGACCATAAGAACTAGTTTGCTCACGCTATTCGCAGTACACACAAGAG
TTGCAAAGTGCTAACCTTTGCCTATTAGAAACCCTCCCAAATCCAAGCCAAACTAATGGCTACA
TTGAGTGTTTTCTCAGTTTTGTGGAAATAGTTAGATGCCAGGACAGTTCAAGCCATTTCCCCCT
AATCCTCTAGAATATAAGTCAGAGTGAAATTTTTGAGACCTTCCCATCTTCAAGTCTGGCTAAC
GCATTTACTCTGCTTCTCTGGTTCCCACCTCTTTATCTATAACACATTACTTTCTGTACAGGGA
AGGAAGATGCATCAGGTCTGATGTGATACCCCCATTCCCCCAAATATAAATATATATAAATATA
CAGAATGTATTCATGTTTCTCTCGGTGTTTTATAGGAATTAACTGATAATGCTCTGTTGATAAT
GAGAAACTTTCTGTAACATAGCTGTAACATCCTTTCCCATTTTCCTGTGATATGGAATGCACTG
GCTAGGGTCCTGAGAGAATCGTGTAAGTCTGTGGTTATAGATCCCCCATGACAGTATTCTTTAA
TGGGATAATAGACCTCAGTGTGCAGTTACCACTCAAGAAGTGTACAAGAGAGTTAGAATCCACA
CTTACAGCCAGATATATCTTGTAAACTTAAAATCTGGTTAATTTTTTAAGCATAGGAGTGGGTG
GCTGCAGTCCTTTTAGGCTAACTGTACTTGGTTTCTGAGCTCTGTCTTCTACATTACATTTATG
GCTCCTTAAACTGATTGCCTAACCAACCAAGGGCAATTCCCATCCATCCATCACATGGGTTGTG
GGAAGGATGCAGCCATGGTGTGCAGCTTCCTTCATGAAGGATTATCTGGCCATGGTACCTGACT
GCTTCATAACTTGCTGTCACTCTGGGTGAGATAATGTGTCTTTAAAAACAGTCCCTGTGGCAGG
TCACTGGGATATAATGTACAACATTCTTAGCCATCATTTCTTTTCTTTTTTTTTCTTTTTTTTG
TTTTGCCCTGAGAGACTCCCAGTGGTTTCTACTGAGGGCTAAAGGGACGAGCTGTTCCCTCATT
GAGCAAGACCGTTCGCTGTTCATGATGTGTTTTATGATGGCTTCTTTGGGAGTTGCTTCTTCAA
CAGTCTCAACTGTGCTGTGGGATCTCCTGATGCTGACTTTTGACCTTTCGTTTTATTAAAACTA
ATTAGTGAAAGA

hide sequence

RefSeq Acc Id:

XM_008759493 ⟹ XP_008757715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,561,820 (-)	NCBI
mRatBN7.2	1	128,978,471 - 129,152,017 (-)	NCBI
Rnor_6.0	1	136,664,201 - 136,841,640 (-)	NCBI

Sequence:

show sequence

TGTTCCCTCAGCAGACCTGTGGTAGATTTCTCATCTGTCCGGGTGCAGCAGAGCTGCTGCCCAA
CCGCCTTTATCTTTTATCCAGAAATCCCAGATGCAAACCGGCTCCATTTAAAGGCCACAACCTT
CAGTAGAAGGACAAACATCACAGCCAGTGAGCTGCCAAGCAGTGCTCCGACCGACCTTGTCAAA
GAGAGCAGCTGGTCCCAGTTTTAGTCAGCACCTCTCAGCATAAGTGTCTGGGTCACAGAAGGAG
AACAGGTCAACATTTCCAAAGACATTTAACACACCAGCACAAAAGGCTACTTAGGTTGTCTTTG
TATGAATTTGGTTGACTAGAGAAGTAAATTAAAAAGGTGCTTTGATTGAAGAAGTCACATGGAC
ATAATCACCATTTCAACAATATATTAGATGATGGTTATTGGAACAGCCCAAACATTTACCACAG
AGCAAGAGATATAGCTTGAGTGGCTACTAGACTATTCCAGAATCAAGGAATGGATGACTACAGG
TATCGGGACAACTATGAGGGCTATGCCCCTAATGATGGCTACTACCGGGGCAATGAGCAGAACC
CGGAAGAAGATGCACAGAGCGATGTTACAGAAGGCCACGATGAGGAGGATGAGATCTATGAGGG
CGAGTACCAAGGCATCCCTCATCCAGATGATGTCAAGTCTAAGCAGACTAAGATGGCACCGTCC
AGAGCAGATGGCCTTCGGGGCCAGGCAGACCTGATGGCTGAGAGAATGGAAGATGAGGAGCAGC
TCGCTCACCAGTACGAGACCATCATTGATGAGTGTGGCCATGGGCGCTTCCAGTGGACCCTCTT
TTTCGTCTTGGGTCTGGCCTTGATGGCTGACGGAGTGGAAGTGTTTGTGGTGAGCTTTGCTCTG
CCAAGTGCAGAGAAAGATATGTGTCTGTCAAGTTCCAAGAAAGGAATGCTCGGGCTGATTGTCT
ACCTAGGAATGATGGCAGGAGCCTTCATCCTGGGGGGCCTGGCTGATAAACTGGGAAGGAAGAA
GGTCCTCAGCATGTCCTTGGCTATCAATGCTTCCTTTGCCTCCCTCTCCTCCTTCGTGCAGGGA
TATGGAGCTTTCCTCTTCTGCAGACTCATCTCAGGCATAGGTATTGGGGGCTCCCTGCCAATTG
TTTTTGCCTACTTTTCTGAGTTCTTATCACGGGAGAAACGCGGTGAGCATCTCAGCTGGCTGGG
TATCTTCTGGATGACTGGGGGCATCTACGCATCTGCCATGGCCTGGAGCATCATTCCACACTAT
GGCTGGGGCTTCAGCATGGGAACCAATTATCACTTCCACAGCTGGAGAGTGTTTGTCATCGTCT
GTGCTCTGCCTGCCACTGTGTCCATGGTGGCCCTGAAGTTCATGCCAGAAAGCCCCAGGTTCCT
GCTGGAGATGGGCAAGCATGATGAAGCCTGGATGATTCTCAAGCAAGTCCATGACACCAACATG
AGAGCTAAGGGGACCCCTGAGAAGGTGTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATGG
ATGAATTCATTGAGATCCAGAGTTCAACAGGGACTTGGTACCAGCGCTGGTTGGTCAGGTTCAT
GACCATTTTCAAACAGGTGTGGGATAACGCCTTGTACTGTGTGATGGGACCCTACAGAATGAAC
ACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTATGGCCTGACAGTGTGGT
TCCCCGACATGATCCGGTATTTCCAGGATGAAGAATATAAGTCTAAAATGAAGGTGTTTTTTGG
TGAGCACGTGCATGGCGCCACAATCAACTTCACCATGGAAAACCAGATCCACCAACATGGGAAG
CTTGTGAACGATAAGTTCATAAAGATGTACTTTAAGCATGTCCTCTTTGAGGACACATTCTTTG
ACAAATGCTATTTTGAAGATGTGACATCCACAGATACTTATTTCAAGAACTGCACCATTGAATC
GACTACCTTCTACAACACAGACCTCTACAAACACAAGTTCATTGACTGTCGGTTTATCAATTCC
ACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAATGATTTTCTGATTT
ACCTCGTCAGCTTCCTCGGCAGCCTGTCTGTCTTGCCTGGGAACATAATTTCTGCCCTGCTCAT
GGACAGAATCGGAAGACTTAAGATGATTGGTGGCTCCATGCTCATCTCTGCAGTCTGCTGCTTC
TTCCTGTTTTTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCA
GCATTGCAGCCTGGAATGCTCTGGATGTGATCACAGTAGAGCTGTATCCCACCAACCAGAGGGC
CACTGCCTTCGGCATCCTCAATGGACTGTGCAAACTTGGTGCCATCCTGGGAAACACTATCTTT
GCTTCTTTTGTTGGGATCACCAAAGTGGTCCCCATCCTTCTGGCTGCTGCTTCTCTGGTTGGAG
GTGGCTTGGTTGCCCTTCGACTGCCAGAGACTCGAGAGCAGGTCCTGATGTGAACAGCACCGTG
GGGAGAGGAAGATGGGAAGATCTTTTTTCAGGACACTTCAGCACAGCCACACCTCCTGCCTCTC
ACTGTCCACAGGACACCACGGACAGCACAGAAGGAGAAATGGACTGTGTGATCCCTAGTTTAGG
ACCCACTTCAGTTGTTAATACGTTTTTAACTCAGGTCATTGGCTAGGGGTGCCCAGAGTCAACC
TTAGGATCCCAGAGCTGTGCGCTTAGCTTCAGGTCTCTCGATCCAAGGCAGGGGGAGGACACTC
CAGTAAATCCATATAGTAAGCAAGAAATTGCTTGCATTTCAGACTGACATTGAGGACAAGAAAC
ACTTAATCTCCTCTATGTAGCTTCTGGGAGCCCAGTGACCTAGCAGATTGCCTCAGTTGGGAGT
GGGATCAATACATAAATATCAGATTCACAGAACAGACTATATATTTGCATTTGAAAGTATCACC
TATCATATTTTCCTTTTGAAAATTGGCACGGTAGTATTGAAGATACTCTGATATAGAAAAACCC
AATATTGAAGCAAAATGTATATAGACTGACTTTTCATCTCAAGCGTCCTGAACTTTGCACAAAG
AAGAGGTGACACGTCAAGAGTGATATTTATTATGGTTTTGCTCTACTCAGAGACACTTGAGGTT
GGTTATTATGTAAACTATGTTTGTATATAGCAGTTTTGAGGTTTTATTCCCACAAATGGTAGCT
GCTAAGATTGCCAGCATTTTAGCCGAATTTGGGGAGAACTCGCCATTCAAGGTCCCAGGAAACT
GGTGCAAATGGATGATGTTTAAGCATGATGTCAGTGCAGCCATCTTGCCTGCTGTCAGGAGGAT
GTACTTGGCAAGCCACATGCTATTTCCTTTACCTGGGAATTTTTCTTCAACTTGGTAGGGCAGT
TACTTTTCTCTCCAATGCTGATCGCTTGTGAAACTCAGGTCCATGGGTCGTTTGATGCTGTTTA
CCCAGGAAGAACAGGAAGAAAGGTTTATTTTTATTTTTATTTTTTAATGGCTGCTTGCATTTTC
CTTTTAAAGAAAAACAAAACAAAACAACACAGGTAACTGGCCAAGGATGGGAAAATGAAATCAC
AGTTCTTCAAAGTGTGAGTCCTTACTGTTTGATTTCAAAGGAAAACACAATGCACTTTTATTAC
AGCATTTAGGACCTATACGAAATTTATGCTCTATGTGCTGGCTCTGGGGTTTTGAAATGGGCCA
TTAGCATGCACGTTAGGAAATAAAAGGCACGAGATACATTCCTGTCTTCAGTGCTCCAAGGAAG
CTTTTCCTGAGATCCAGAATGGACTGTGAATGTGGAAATGGAAGGACTCAGGGCATACCATTCT
GGCAGGTGTCAGCCATTTACCTGTAGTTTGGAGGCCATGGTGGGGTAGCAGCTTTTGTTCATTA
GAACCCTCTGGGATGGTAGAGACAGGGAGCCAGGGGTTCCTGCCACCTGAGCTGCACTTGCCTG
GGCCAGGGGAACATCTGACCATAAGAACTAGTTTGCTCACGCTATTCGCAGTACACACAAGAGT
TGCAAAGTGCTAACCTTTGCCTATTAGAAACCCTCCCAAATCCAAGCCAAACTAATGGCTACAT
TGAGTGTTTTCTCAGTTTTGTGGAAATAGTTAGATGCCAGGACAGTTCAAGCCATTTCCCCCTA
ATCCTCTAGAATATAAGTCAGAGTGAAATTTTTGAGACCTTCCCATCTTCAAGTCTGGCTAACG
CATTTACTCTGCTTCTCTGGTTCCCACCTCTTTATCTATAACACATTACTTTCTGTACAGGGAA
GGAAGATGCATCAGGTCTGATGTGATACCCCCATTCCCCCAAATATAAATATATATAAATATAC
AGAATGTATTCATGTTTCTCTCGGTGTTTTATAGGAATTAACTGATAATGCTCTGTTGATAATG
AGAAACTTTCTGTAACATAGCTGTAACATCCTTTCCCATTTTCCTGTGATATGGAATGCACTGG
CTAGGGTCCTGAGAGAATCGTGTAAGTCTGTGGTTATAGATCCCCCATGACAGTATTCTTTAAT
GGGATAATAGACCTCAGTGTGCAGTTACCACTCAAGAAGTGTACAAGAGAGTTAGAATCCACAC
TTACAGCCAGATATATCTTGTAAACTTAAAATCTGGTTAATTTTTTAAGCATAGGAGTGGGTGG
CTGCAGTCCTTTTAGGCTAACTGTACTTGGTTTCTGAGCTCTGTCTTCTACATTACATTTATGG
CTCCTTAAACTGATTGCCTAACCAACCAAGGGCAATTCCCATCCATCCATCACATGGGTTGTGG
GAAGGATGCAGCCATGGTGTGCAGCTTCCTTCATGAAGGATTATCTGGCCATGGTACCTGACTG
CTTCATAACTTGCTGTCACTCTGGGTGAGATAATGTGTCTTTAAAAACAGTCCCTGTGGCAGGT
CACTGGGATATAATGTACAACATTCTTAGCCATCATTTCTTTTCTTTTTTTTTCTTTTTTTTGT
TTTGCCCTGAGAGACTCCCAGTGGTTTCTACTGAGGGCTAAAGGGACGAGCTGTTCCCTCATTG
AGCAAGACCGTTCGCTGTTCATGATGTGTTTTATGATGGCTTCTTTGGGAGTTGCTTCTTCAAC
AGTCTCAACTGTGCTGTGGGATCTCCTGATGCTGACTTTTGACCTTTCGTTTTATTAAAACTAA
TTAGTGAAA

hide sequence

RefSeq Acc Id:

XM_017588700 ⟹ XP_017444189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,561,444 (-)	NCBI
mRatBN7.2	1	128,978,471 - 129,151,665 (-)	NCBI
Rnor_6.0	1	136,664,199 - 136,841,433 (-)	NCBI

Sequence:

show sequence

TGGTGGCTCTGGGACTCGGGGAGGGGCAGGTGAGGGATGAGAGGTGTATGGATGGTGGAAAACT
AGACATTGCAACCAGCTCGGTGGTCTCTTTTATCCTTGCCCTGTGCAGAAGAGGCGACTTGTTC
TGCTTGCTAGAAGATGCAGTTGATATGGCCACAACCTTCAGTAGAAGGACAAACATCACAGCCA
GTGAGCTGCCAAGCAGTGCTCCGACCGACCTTGTCAAAGAGAGCAGCTGGTCCCAGTTTTAGTC
AGCACCTCTCAGCATAAGTGTCTGGGTCACAGAAGGAGAACAGGTCAACATTTCCAAAGACATT
TAACACACCAGCACAAAAGGCTACTTAGGTTGTCTTTGTATGAATTTGGTTGACTAGAGAAGTA
AATTAAAAAGGTGCTTTGATTGAAGAAGTCACATGGACATAATCACCATTTCAACAATATATTA
GATGATGGTTATTGGAACAGCCCAAACATTTACCACAGAGCAAGAGATATAGCTTGAGTGGCTA
CTAGACTATTCCAGAATCAAGGAATGGATGACTACAGGTATCGGGACAACTATGAGGGCTATGC
CCCTAATGATGGCTACTACCGGGGCAATGAGCAGAACCCGGAAGAAGATGCACAGAGCGATGTT
ACAGAAGGCCACGATGAGGAGGATGAGATCTATGAGGGCGAGTACCAAGGCATCCCTCATCCAG
ATGATGTCAAGTCTAAGCAGACTAAGATGGCACCGTCCAGAGCAGATGGCCTTCGGGGCCAGGC
AGACCTGATGGCTGAGAGAATGGAAGATGAGGAGCAGCTCGCTCACCAGTACGAGACCATCATT
GATGAGTGTGGCCATGGGCGCTTCCAGTGGACCCTCTTTTTCGTCTTGGGTCTGGCCTTGATGG
CTGACGGAGTGGAAGTGTTTGTGGTGAGCTTTGCTCTGCCAAGTGCAGAGAAAGATATGTGTCT
GTCAAGTTCCAAGAAAGGAATGCTCGGGCTGATTGTCTACCTAGGAATGATGGCAGGAGCCTTC
ATCCTGGGGGGCCTGGCTGATAAACTGGGAAGGAAGAAGGTCCTCAGCATGTCCTTGGCTATCA
ATGCTTCCTTTGCCTCCCTCTCCTCCTTCGTGCAGGGATATGGAGCTTTCCTCTTCTGCAGACT
CATCTCAGGCATAGGTATTGGGGGCTCCCTGCCAATTGTTTTTGCCTACTTTTCTGAGTTCTTA
TCACGGGAGAAACGCGGTGAGCATCTCAGCTGGCTGGGTATCTTCTGGATGACTGGGGGCATCT
ACGCATCTGCCATGGCCTGGAGCATCATTCCACACTATGGCTGGGGCTTCAGCATGGGAACCAA
TTATCACTTCCACAGCTGGAGAGTGTTTGTCATCGTCTGTGCTCTGCCTGCCACTGTGTCCATG
GTGGCCCTGAAGTTCATGCCAGAAAGCCCCAGGTTCCTGCTGGAGATGGGCAAGCATGATGAAG
CCTGGATGATTCTCAAGCAAGTCCATGACACCAACATGAGAGCTAAGGGGACCCCTGAGAAGGT
GTTCACGGTTTCCCACATCAAAACTCCCAAGCAAATGGATGAATTCATTGAGATCCAGAGTTCA
ACAGGGACTTGGTACCAGCGCTGGTTGGTCAGGTTCATGACCATTTTCAAACAGGTGTGGGATA
ACGCCTTGTACTGTGTGATGGGACCCTACAGAATGAACACCCTGATTCTGGCTGTGGTCTGGTT
CACCATGGCCTTAAGTTACTATGGCCTGACAGTGTGGTTCCCCGACATGATCCGGTATTTCCAG
GATGAAGAATATAAGTCTAAAATGAAGGTGTTTTTTGGTGAGCACGTGCATGGCGCCACAATCA
ACTTCACCATGGAAAACCAGATCCACCAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGAT
GTACTTTAAGCATGTCCTCTTTGAGGACACATTCTTTGACAAATGCTATTTTGAAGATGTGACA
TCCACAGATACTTATTTCAAGAACTGCACCATTGAATCGACTACCTTCTACAACACAGACCTCT
ACAAACACAAGTTCATTGACTGTCGGTTTATCAATTCCACCTTTCTGGAGCAGAAGGAGGGCTG
CCACATGGACTTTGAAGAGGACAATGATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCCTG
TCTGTCTTGCCTGGGAACATAATTTCTGCCCTGCTCATGGACAGAATCGGAAGACTTAAGATGA
TTGGTGGCTCCATGCTCATCTCTGCAGTCTGCTGCTTCTTCCTGTTTTTTGGCAACAGCGAGTC
TGCGATGATCGGCTGGCAATGCCTGTTCTGTGGGACCAGCATTGCAGCCTGGAATGCTCTGGAT
GTGATCACAGTAGAGCTGTATCCCACCAACCAGAGGGCCACTGCCTTCGGCATCCTCAATGGAC
TGTGCAAACTTGGTGCCATCCTGGGAAACACTATCTTTGCTTCTTTTGTTGGGATCACCAAAGT
GGTCCCCATCCTTCTGGCTGCTGCTTCTCTGGTTGGAGGTGGCTTGGTTGCCCTTCGACTGCCA
GAGACTCGAGAGCAGGTCCTGATGTGAACAGCACCGTGGGGAGAGGAAGATGGGAAGATCTTTT
TTCAGGACACTTCAGCACAGCCACACCTCCTGCCTCTCACTGTCCACAGGACACCACGGACAGC
ACAGAAGGAGAAATGGACTGTGTGATCCCTAGTTTAGGACCCACTTCAGTTGTTAATACGTTTT
TAACTCAGGTCATTGGCTAGGGGTGCCCAGAGTCAACCTTAGGATCCCAGAGCTGTGCGCTTAG
CTTCAGGTCTCTCGATCCAAGGCAGGGGGAGGACACTCCAGTAAATCCATATAGTAAGCAAGAA
ATTGCTTGCATTTCAGACTGACATTGAGGACAAGAAACACTTAATCTCCTCTATGTAGCTTCTG
GGAGCCCAGTGACCTAGCAGATTGCCTCAGTTGGGAGTGGGATCAATACATAAATATCAGATTC
ACAGAACAGACTATATATTTGCATTTGAAAGTATCACCTATCATATTTTCCTTTTGAAAATTGG
CACGGTAGTATTGAAGATACTCTGATATAGAAAAACCCAATATTGAAGCAAAATGTATATAGAC
TGACTTTTCATCTCAAGCGTCCTGAACTTTGCACAAAGAAGAGGTGACACGTCAAGAGTGATAT
TTATTATGGTTTTGCTCTACTCAGAGACACTTGAGGTTGGTTATTATGTAAACTATGTTTGTAT
ATAGCAGTTTTGAGGTTTTATTCCCACAAATGGTAGCTGCTAAGATTGCCAGCATTTTAGCCGA
ATTTGGGGAGAACTCGCCATTCAAGGTCCCAGGAAACTGGTGCAAATGGATGATGTTTAAGCAT
GATGTCAGTGCAGCCATCTTGCCTGCTGTCAGGAGGATGTACTTGGCAAGCCACATGCTATTTC
CTTTACCTGGGAATTTTTCTTCAACTTGGTAGGGCAGTTACTTTTCTCTCCAATGCTGATCGCT
TGTGAAACTCAGGTCCATGGGTCGTTTGATGCTGTTTACCCAGGAAGAACAGGAAGAAAGGTTT
ATTTTTATTTTTATTTTTTAATGGCTGCTTGCATTTTCCTTTTAAAGAAAAACAAAACAAAACA
ACACAGGTAACTGGCCAAGGATGGGAAAATGAAATCACAGTTCTTCAAAGTGTGAGTCCTTACT
GTTTGATTTCAAAGGAAAACACAATGCACTTTTATTACAGCATTTAGGACCTATACGAAATTTA
TGCTCTATGTGCTGGCTCTGGGGTTTTGAAATGGGCCATTAGCATGCACGTTAGGAAATAAAAG
GCACGAGATACATTCCTGTCTTCAGTGCTCCAAGGAAGCTTTTCCTGAGATCCAGAATGGACTG
TGAATGTGGAAATGGAAGGACTCAGGGCATACCATTCTGGCAGGTGTCAGCCATTTACCTGTAG
TTTGGAGGCCATGGTGGGGTAGCAGCTTTTGTTCATTAGAACCCTCTGGGATGGTAGAGACAGG
GAGCCAGGGGTTCCTGCCACCTGAGCTGCACTTGCCTGGGCCAGGGGAACATCTGACCATAAGA
ACTAGTTTGCTCACGCTATTCGCAGTACACACAAGAGTTGCAAAGTGCTAACCTTTGCCTATTA
GAAACCCTCCCAAATCCAAGCCAAACTAATGGCTACATTGAGTGTTTTCTCAGTTTTGTGGAAA
TAGTTAGATGCCAGGACAGTTCAAGCCATTTCCCCCTAATCCTCTAGAATATAAGTCAGAGTGA
AATTTTTGAGACCTTCCCATCTTCAAGTCTGGCTAACGCATTTACTCTGCTTCTCTGGTTCCCA
CCTCTTTATCTATAACACATTACTTTCTGTACAGGGAAGGAAGATGCATCAGGTCTGATGTGAT
ACCCCCATTCCCCCAAATATAAATATATATAAATATACAGAATGTATTCATGTTTCTCTCGGTG
TTTTATAGGAATTAACTGATAATGCTCTGTTGATAATGAGAAACTTTCTGTAACATAGCTGTAA
CATCCTTTCCCATTTTCCTGTGATATGGAATGCACTGGCTAGGGTCCTGAGAGAATCGTGTAAG
TCTGTGGTTATAGATCCCCCATGACAGTATTCTTTAATGGGATAATAGACCTCAGTGTGCAGTT
ACCACTCAAGAAGTGTACAAGAGAGTTAGAATCCACACTTACAGCCAGATATATCTTGTAAACT
TAAAATCTGGTTAATTTTTTAAGCATAGGAGTGGGTGGCTGCAGTCCTTTTAGGCTAACTGTAC
TTGGTTTCTGAGCTCTGTCTTCTACATTACATTTATGGCTCCTTAAACTGATTGCCTAACCAAC
CAAGGGCAATTCCCATCCATCCATCACATGGGTTGTGGGAAGGATGCAGCCATGGTGTGCAGCT
TCCTTCATGAAGGATTATCTGGCCATGGTACCTGACTGCTTCATAACTTGCTGTCACTCTGGGT
GAGATAATGTGTCTTTAAAAACAGTCCCTGTGGCAGGTCACTGGGATATAATGTACAACATTCT
TAGCCATCATTTCTTTTCTTTTTTTTTCTTTTTTTTGTTTTGCCCTGAGAGACTCCCAGTGGTT
TCTACTGAGGGCTAAAGGGACGAGCTGTTCCCTCATTGAGCAAGACCGTTCGCTGTTCATGATG
TGTTTTATGATGGCTTCTTTGGGAGTTGCTTCTTCAACAGTCTCAACTGTGCTGTGGGATCTCC
TGATGCTGACTTTTGACCTTTCGTTTTATTAAAACTAATTAGTGAAAGA

hide sequence

RefSeq Acc Id:

XM_017588701 ⟹ XP_017444190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,562,635 (-)	NCBI
mRatBN7.2	1	128,978,471 - 129,152,325 (-)	NCBI
Rnor_6.0	1	136,664,199 - 136,842,158 (-)	NCBI

Sequence:

show sequence

GGTTCCCAGGCCTGGCATGCCGAGACTCGCACGGGGACCGCTGGGTGCGGTTGTTGGGTAAAGC
CCCAAAGGACAGCAGAGTTGGAAAGCAGCGCACCGAAAAGCAAGCACTTGCTGCTGCCCCTGGC
TGCGCGCTTCTTTGAATGTGGCCTTCCCCAGGACTTGGAGTGAAAGCGCATGAACTATTGGCGC
GGCCACAACCTTCAGTAGAAGGACAAACATCACAGCCAGTGAGCTGCCAAGCAGTGCTCCGACC
GACCTTGTCAAAGAGAGCAGCTGGTCCCAGTTTTAGTCAGCACCTCTCAGCATAAGTGTCTGGG
TCACAGAAGGAGAACAGGTCAACATTTCCAAAGACATTTAACACACCAGCACAAAAGGCTACTT
AGGTTGTCTTTGTATGAATTTGGTTGACTAGAGAAGTAAATTAAAAAGGTGCTTTGATTGAAGA
AGTCACATGGACATAATCACCATTTCAACAATATATTAGATGATGGTTATTGGAACAGCCCAAA
CATTTACCACAGAGCAAGAGATATAGCTTGAGTGGCTACTAGACTATTCCAGAATCAAGGAATG
GATGACTACAGGTATCGGGACAACTATGAGGGCTATGCCCCTAATGATGGCTACTACCGGGGCA
ATGAGCAGAACCCGGAAGAAGATGCACAGAGCGATGTTACAGAAGGCCACGATGAGGAGGATGA
GATCTATGAGGGCGAGTACCAAGGCATCCCTCATCCAGATGATGTCAAGTCTAAGCAGACTAAG
ATGGCACCGTCCAGAGCAGATGGCCTTCGGGGCCAGGCAGACCTGATGGCTGAGAGAATGGAAG
ATGAGGAGCAGCTCGCTCACCAGTACGAGACCATCATTGATGAGTGTGGCCATGGGCGCTTCCA
GTGGACCCTCTTTTTCGTCTTGGGTCTGGCCTTGATGGCTGACGGAGTGGAAGTGTTTGTGGTG
AGCTTTGCTCTGCCAAGTGCAGAGAAAGATATGTGTCTGTCAAGTTCCAAGAAAGGAATGCTCG
GGCTGATTGTCTACCTAGGAATGATGGCAGGAGCCTTCATCCTGGGGGGCCTGGCTGATAAACT
GGGAAGGAAGAAGGTCCTCAGCATGTCCTTGGCTATCAATGCTTCCTTTGCCTCCCTCTCCTCC
TTCGTGCAGGGATATGGAGCTTTCCTCTTCTGCAGACTCATCTCAGGCATAGGTATTGGGGGCT
CCCTGCCAATTGTTTTTGCCTACTTTTCTGAGTTCTTATCACGGGAGAAACGCGGTGAGCATCT
CAGCTGGCTGGGTATCTTCTGGATGACTGGGGGCATCTACGCATCTGCCATGGCCTGGAGCATC
ATTCCACACTATGGCTGGGGCTTCAGCATGGGAACCAATTATCACTTCCACAGCTGGAGAGTGT
TTGTCATCGTCTGTGCTCTGCCTGCCACTGTGTCCATGGTGGCCCTGAAGTTCATGCCAGAAAG
CCCCAGGTTCCTGCTGGAGATGGGCAAGCATGATGAAGCCTGGATGATTCTCAAGCAAGTCCAT
GACACCAACATGAGAGCTAAGGGGACCCCTGAGAAGGTGTTCACGGTTTCCCACATCAAAACTC
CCAAGCAAATGGATGAATTCATTGAGATCCAGAGTTCAACAGGGACTTGGTACCAGCGCTGGTT
GGTCAGGTTCATGACCATTTTCAAACAGGTGTGGGATAACGCCTTGTACTGTGTGATGGGACCC
TACAGAATGAACACCCTGATTCTGGCTGTGGTCTGGTTCACCATGGCCTTAAGTTACTATGGCC
TGACAGTGTGGTTCCCCGACATGATCCGGTATTTCCAGGATGAAGAATATAAGTCTAAAATGAA
GGTGTTTTTTGGTGAGCACGTGCATGGCGCCACAATCAACTTCACCATGGAAAACCAGATCCAC
CAACATGGGAAGCTTGTGAACGATAAGTTCATAAAGATGTACTTTAAGCATGTCCTCTTTGAGG
ACACATTCTTTGACAAATGCTATTTTGAAGATGTGACATCCACAGATACTTATTTCAAGAACTG
CACCATTGAATCGACTACCTTCTACAACACAGACCTCTACAAACACAAGTTCATTGACTGTCGG
TTTATCAATTCCACCTTTCTGGAGCAGAAGGAGGGCTGCCACATGGACTTTGAAGAGGACAATG
ATTTTCTGATTTACCTCGTCAGCTTCCTCGGCAGCCTGTCTGTCTTGCCTGGGAACATAATTTC
TGCCCTGCTCATGGACAGAATCGGAAGACTTAAGATGATTGGTGGCTCCATGCTCATCTCTGCA
GTCTGCTGCTTCTTCCTGTTTTTTGGCAACAGCGAGTCTGCGATGATCGGCTGGCAATGCCTGT
TCTGTGGGACCAGCATTGCAGCCTGGAATGCTCTGGATGTGATCACAGTAGAGCTGTATCCCAC
CAACCAGAGGGCCACTGCCTTCGGCATCCTCAATGGACTGTGCAAACTTGGTGCCATCCTGGGA
AACACTATCTTTGCTTCTTTTGTTGGGATCACCAAAGTGGTCCCCATCCTTCTGGCTGCTGCTT
CTCTGGTTGGAGGTGGCTTGGTTGCCCTTCGACTGCCAGAGACTCGAGAGCAGGTCCTGATGTG
AACAGCACCGTGGGGAGAGGAAGATGGGAAGATCTTTTTTCAGGACACTTCAGCACAGCCACAC
CTCCTGCCTCTCACTGTCCACAGGACACCACGGACAGCACAGAAGGAGAAATGGACTGTGTGAT
CCCTAGTTTAGGACCCACTTCAGTTGTTAATACGTTTTTAACTCAGGTCATTGGCTAGGGGTGC
CCAGAGTCAACCTTAGGATCCCAGAGCTGTGCGCTTAGCTTCAGGTCTCTCGATCCAAGGCAGG
GGGAGGACACTCCAGTAAATCCATATAGTAAGCAAGAAATTGCTTGCATTTCAGACTGACATTG
AGGACAAGAAACACTTAATCTCCTCTATGTAGCTTCTGGGAGCCCAGTGACCTAGCAGATTGCC
TCAGTTGGGAGTGGGATCAATACATAAATATCAGATTCACAGAACAGACTATATATTTGCATTT
GAAAGTATCACCTATCATATTTTCCTTTTGAAAATTGGCACGGTAGTATTGAAGATACTCTGAT
ATAGAAAAACCCAATATTGAAGCAAAATGTATATAGACTGACTTTTCATCTCAAGCGTCCTGAA
CTTTGCACAAAGAAGAGGTGACACGTCAAGAGTGATATTTATTATGGTTTTGCTCTACTCAGAG
ACACTTGAGGTTGGTTATTATGTAAACTATGTTTGTATATAGCAGTTTTGAGGTTTTATTCCCA
CAAATGGTAGCTGCTAAGATTGCCAGCATTTTAGCCGAATTTGGGGAGAACTCGCCATTCAAGG
TCCCAGGAAACTGGTGCAAATGGATGATGTTTAAGCATGATGTCAGTGCAGCCATCTTGCCTGC
TGTCAGGAGGATGTACTTGGCAAGCCACATGCTATTTCCTTTACCTGGGAATTTTTCTTCAACT
TGGTAGGGCAGTTACTTTTCTCTCCAATGCTGATCGCTTGTGAAACTCAGGTCCATGGGTCGTT
TGATGCTGTTTACCCAGGAAGAACAGGAAGAAAGGTTTATTTTTATTTTTATTTTTTAATGGCT
GCTTGCATTTTCCTTTTAAAGAAAAACAAAACAAAACAACACAGGTAACTGGCCAAGGATGGGA
AAATGAAATCACAGTTCTTCAAAGTGTGAGTCCTTACTGTTTGATTTCAAAGGAAAACACAATG
CACTTTTATTACAGCATTTAGGACCTATACGAAATTTATGCTCTATGTGCTGGCTCTGGGGTTT
TGAAATGGGCCATTAGCATGCACGTTAGGAAATAAAAGGCACGAGATACATTCCTGTCTTCAGT
GCTCCAAGGAAGCTTTTCCTGAGATCCAGAATGGACTGTGAATGTGGAAATGGAAGGACTCAGG
GCATACCATTCTGGCAGGTGTCAGCCATTTACCTGTAGTTTGGAGGCCATGGTGGGGTAGCAGC
TTTTGTTCATTAGAACCCTCTGGGATGGTAGAGACAGGGAGCCAGGGGTTCCTGCCACCTGAGC
TGCACTTGCCTGGGCCAGGGGAACATCTGACCATAAGAACTAGTTTGCTCACGCTATTCGCAGT
ACACACAAGAGTTGCAAAGTGCTAACCTTTGCCTATTAGAAACCCTCCCAAATCCAAGCCAAAC
TAATGGCTACATTGAGTGTTTTCTCAGTTTTGTGGAAATAGTTAGATGCCAGGACAGTTCAAGC
CATTTCCCCCTAATCCTCTAGAATATAAGTCAGAGTGAAATTTTTGAGACCTTCCCATCTTCAA
GTCTGGCTAACGCATTTACTCTGCTTCTCTGGTTCCCACCTCTTTATCTATAACACATTACTTT
CTGTACAGGGAAGGAAGATGCATCAGGTCTGATGTGATACCCCCATTCCCCCAAATATAAATAT
ATATAAATATACAGAATGTATTCATGTTTCTCTCGGTGTTTTATAGGAATTAACTGATAATGCT
CTGTTGATAATGAGAAACTTTCTGTAACATAGCTGTAACATCCTTTCCCATTTTCCTGTGATAT
GGAATGCACTGGCTAGGGTCCTGAGAGAATCGTGTAAGTCTGTGGTTATAGATCCCCCATGACA
GTATTCTTTAATGGGATAATAGACCTCAGTGTGCAGTTACCACTCAAGAAGTGTACAAGAGAGT
TAGAATCCACACTTACAGCCAGATATATCTTGTAAACTTAAAATCTGGTTAATTTTTTAAGCAT
AGGAGTGGGTGGCTGCAGTCCTTTTAGGCTAACTGTACTTGGTTTCTGAGCTCTGTCTTCTACA
TTACATTTATGGCTCCTTAAACTGATTGCCTAACCAACCAAGGGCAATTCCCATCCATCCATCA
CATGGGTTGTGGGAAGGATGCAGCCATGGTGTGCAGCTTCCTTCATGAAGGATTATCTGGCCAT
GGTACCTGACTGCTTCATAACTTGCTGTCACTCTGGGTGAGATAATGTGTCTTTAAAAACAGTC
CCTGTGGCAGGTCACTGGGATATAATGTACAACATTCTTAGCCATCATTTCTTTTCTTTTTTTT
TCTTTTTTTTGTTTTGCCCTGAGAGACTCCCAGTGGTTTCTACTGAGGGCTAAAGGGACGAGCT
GTTCCCTCATTGAGCAAGACCGTTCGCTGTTCATGATGTGTTTTATGATGGCTTCTTTGGGAGT
TGCTTCTTCAACAGTCTCAACTGTGCTGTGGGATCTCCTGATGCTGACTTTTGACCTTTCGTTT
TATTAAAACTAATTAGTGAAAGA

hide sequence

RefSeq Acc Id:

XM_039080109 ⟹ XP_038936037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,561,206 (-)	NCBI
mRatBN7.2	1	128,978,471 - 129,151,446 (-)	NCBI

RefSeq Acc Id:

XM_063268635 ⟹ XP_063124705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,509,634 (-)	NCBI

RefSeq Acc Id:

XM_063268675 ⟹ XP_063124745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	138,388,268 - 138,520,568 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_476555	(Get FASTA)	NCBI Sequence Viewer
	XP_008757714	(Get FASTA)	NCBI Sequence Viewer
	XP_008757715	(Get FASTA)	NCBI Sequence Viewer
	XP_017444189	(Get FASTA)	NCBI Sequence Viewer
	XP_017444190	(Get FASTA)	NCBI Sequence Viewer
	XP_038936037	(Get FASTA)	NCBI Sequence Viewer
	XP_063124705	(Get FASTA)	NCBI Sequence Viewer
	XP_063124745	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA42189	(Get FASTA)	NCBI Sequence Viewer
	CAG34350	(Get FASTA)	NCBI Sequence Viewer
	EDM08525	(Get FASTA)	NCBI Sequence Viewer
	EDM08526	(Get FASTA)	NCBI Sequence Viewer
	EDM08527	(Get FASTA)	NCBI Sequence Viewer
	EDM08528	(Get FASTA)	NCBI Sequence Viewer
	EDM08529	(Get FASTA)	NCBI Sequence Viewer
	EDM08530	(Get FASTA)	NCBI Sequence Viewer
	EDM08531	(Get FASTA)	NCBI Sequence Viewer
	EDM08532	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000083518
GenBank Protein	Q63564	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_476555 ⟸ NM_057207

- UniProtKB:

Q63564 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDDYRYRDNYEGYAPNDGYYRGNEQNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKSKQT
KMAPSRADGLRGQADLMAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLVLALMADGVEVFV
VSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS
SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWS
IIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQV
HDTNMRAKGTPEKVFTVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMG
PYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQI
HQHGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFIDC
RFINSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLIS
AVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKLGAIL
GNTIFASFVGITKVVPILLAAASLVGGGLVALRLPETREQVLM

hide sequence

RefSeq Acc Id:	XP_008757715 ⟸ XM_008759493
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDYRYRDNYEGYAPNDGYYRGNEQNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKSKQT KMAPSRADGLRGQADLMAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFV VSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWS IIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQV HDTNMRAKGTPEKVFTVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMG PYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQI HQHGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFIDC RFINSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLIS AVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKLGAIL GNTIFASFVGITKVVPILLAAASLVGGGLVALRLPETREQVLM hide sequence

RefSeq Acc Id:	XP_008757714 ⟸ XM_008759492
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDYRYRDNYEGYAPNDGYYRGNEQNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKSKQT KMAPSRADGLRGQADLMAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFV VSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWS IIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQV HDTNMRAKGTPEKVFTVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMG PYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQI HQHGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFIDC RFINSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLIS AVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKLGAIL GNTIFASFVGITKVVPILLAAASLVGGGLVALRLPETREQVLM hide sequence

RefSeq Acc Id:	XP_017444190 ⟸ XM_017588701
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDYRYRDNYEGYAPNDGYYRGNEQNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKSKQT KMAPSRADGLRGQADLMAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFV VSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWS IIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQV HDTNMRAKGTPEKVFTVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMG PYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQI HQHGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFIDC RFINSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLIS AVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKLGAIL GNTIFASFVGITKVVPILLAAASLVGGGLVALRLPETREQVLM hide sequence

RefSeq Acc Id:	XP_017444189 ⟸ XM_017588700
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDYRYRDNYEGYAPNDGYYRGNEQNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKSKQT KMAPSRADGLRGQADLMAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFV VSFALPSAEKDMCLSSSKKGMLGLIVYLGMMAGAFILGGLADKLGRKKVLSMSLAINASFASLS SFVQGYGAFLFCRLISGIGIGGSLPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWS IIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHDEAWMILKQV HDTNMRAKGTPEKVFTVSHIKTPKQMDEFIEIQSSTGTWYQRWLVRFMTIFKQVWDNALYCVMG PYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVHGATINFTMENQI HQHGKLVNDKFIKMYFKHVLFEDTFFDKCYFEDVTSTDTYFKNCTIESTTFYNTDLYKHKFIDC RFINSTFLEQKEGCHMDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLIS AVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKLGAIL GNTIFASFVGITKVVPILLAAASLVGGGLVALRLPETREQVLM hide sequence

RefSeq Acc Id:	XP_038936037 ⟸ XM_039080109
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124745 ⟸ XM_063268675
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124705 ⟸ XM_063268635
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZWR6 (UniProtKB/TrEMBL), A6JBZ8 (UniProtKB/TrEMBL)

Protein Domains

Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63564-F1-model_v2	AlphaFold	Q63564	1-683	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619716	AgrOrtholog
BioCyc Gene	G2FUF-58865	BioCyc
Ensembl Genes	ENSRNOG00000011160	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000015084	ENTREZGENE
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot
	E3 ubiquitin-protein ligase SopA	UniProtKB/Swiss-Prot
InterPro	LD_SV2	UniProtKB/Swiss-Prot
	MFS	UniProtKB/Swiss-Prot
	MFS_dom	UniProtKB/Swiss-Prot
	MFS_sugar_transport-like	UniProtKB/Swiss-Prot
	MFS_trans_sf	UniProtKB/Swiss-Prot
	Sugar_transporter_CS	UniProtKB/Swiss-Prot
	SV2	UniProtKB/Swiss-Prot
KEGG Report	rno:117556	UniProtKB/Swiss-Prot
NCBI Gene	117556	ENTREZGENE
PANTHER	SYNAPTIC VESICLE GLYCOPROTEIN 2	UniProtKB/Swiss-Prot
	SYNAPTIC VESICLE GLYCOPROTEIN 2B	UniProtKB/Swiss-Prot
Pfam	LD_SV2	UniProtKB/Swiss-Prot
	MFS_1	UniProtKB/Swiss-Prot
	Sugar_tr	UniProtKB/Swiss-Prot
PhenoGen	Sv2b	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000011160	RatGTEx
Superfamily-SCOP	Pentapeptide repeat-like	UniProtKB/Swiss-Prot
	SSF103473	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZWR6	ENTREZGENE, UniProtKB/TrEMBL
	A6JBZ8	ENTREZGENE, UniProtKB/TrEMBL
	A6JC03_RAT	UniProtKB/TrEMBL
	A6JC05_RAT	UniProtKB/TrEMBL
	Q63564	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Sv2b	synaptic vesicle glycoprotein 2b		synaptic vesicle glycoprotein 2 b	Name updated	1299863	APPROVED
2002-08-07	Sv2b	synaptic vesicle glycoprotein 2 b			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	a synaptic vesicle protein	634183
gene_expression	expressed in neural tissues	634183

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)