D1Rat349 Marker Search Result - Rat Genome Database

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Marker: D1Rat349

Symbol: D1Rat349
Previously known as: R0252-D04; oxsts10222; 
RGD ID: 40404
Expected Size: 171 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01136,742,822 - 136,742,994NCBIRnor6.0
Rnor_5.01137,735,464 - 137,735,636UniSTSRnor5.0
RGSC_v3.41130,788,605 - 130,788,777UniSTSRGSC3.4
RGSC_v3.41130,788,605 - 130,788,775RGDRGSC3.4
RGSC_v3.11130,866,948 - 130,867,118RGD
Celera1121,166,352 - 121,166,524UniSTS
RH 3.4 Map11012.3RGD
RH 3.4 Map11012.3UniSTS
RH 2.0 Map1660.7RGD
SHRSP x BN Map165.4199RGD
Cytogenetic Map1q31UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SHRSP.WKY-(D1Mgh5-D1Rat349)/IzmTkyo  
Genes:   Sv2b  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer TGACTTTTACTGGCCTAGGCA
Reverse Primer TCGGTGTCTTTTCATTGCTG
 
Template
AATCCCCCTGGAAAGCAAAAGCCCATGTGAACACCAGTTTTACTGAGAAATCCTGTTTTAACAA
AATAAATGAGGGAGAGTTGGTAGGGAACCAGAAAGAAAAGTTACCCAATGACTTTTACTGGCCT
AGGCATTACACACACACACACACACACACACACACACACACACACACACACACACGGACCAGTT
TGATACCATAAAATCCATAGACATANTGTTANTTAACCCTTTGAAAGACCAGTACAATTTTNCC
AATTAAACAGCAATGAAAAGACACCGACAAGTGACAACCCATTAGGGGTACGAGNTNGAATTNG
TAATACATGGTACATAGNTGTTTCTGTGTGAAATTGTTATCCGNTCACAATTCCACACAACATA
NGAGNGGAAGCATAAAGTGTAAAGCNGGGGTGCATAATGATGAGNATCANTTATTGCGTTGCNT
CAATGNNGTTTCCNTCNGAAACTGTNGTGNANTGCATAATGAATCGNAANGGCGNGAGAGGNGT
NGCGTATTGNGAGANGNGTGTNTNCTNTANAGTGAGANNGCANANTGNTGACTNANGNTGCCTG
AAGANTG

Region

Nucleotide Sequences
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 117556 UniSTS
UniSTS 121509 UniSTS