| 2323071 | LOC100359974 | DDB1 and CUL4 associated factor 12 | 1 | 125000273 | 125002966 | Rat |
| 69305 | Nr2f2 | nuclear receptor subfamily 2, group F, member 2 | 1 | 125280974 | 125286929 | Rat |
| 1583736 | LOC499176 | similar to glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)-like | 1 | 125470732 | 125471962 | Rat |
| 2322933 | LOC100360012 | mCG17902-like | 1 | 125476424 | 125545646 | Rat |
| 1583496 | LOC681195 | similar to ribosomal protein L21 | 1 | 125654830 | 125655312 | Rat |
| 1562781 | RGD1562781 | similar to ribosomal protein L27 | 1 | 126043510 | 126043920 | Rat |
| 1562967 | Mctp2 | multiple C2 domains, transmembrane 2 | 1 | 127132844 | 127308205 | Rat |
| 1597999 | LOC681273 | similar to spermatogenesis associated 13 | 1 | 127524671 | 127552975 | Rat |
| 1583787 | LOC365286 | similar to Macrophage migration inhibitory factor (MIF) (Phenylpyruvate tautomerase) (Glycosylation-inhibiting factor) (GIF) (Delayed early response protein 6) (DER6) | 1 | 128177636 | 128177987 | Rat |
| 1596763 | LOC681327 | similar to U6 snRNA-associated Sm-like protein LSm2 (SnRNP core Sm-like protein Sm-x5) (G7b protein) | 1 | 128333743 | 128334069 | Rat |
| 1311983 | Rgma | RGM domain family, member A | 1 | 128547399 | 128591304 | Rat |
| 1310056 | Chd2 | chromodomain helicase DNA binding protein 2 | 1 | 128609727 | 128720325 | Rat |
| 1583735 | LOC499179 | similar to topoisomerase (DNA) I | 1 | 128832188 | 128852576 | Rat |
| 2322503 | LOC100360248 | hypothetical LOC100360248 | 1 | 128894301 | 128936100 | Rat |
| 1596692 | Fam174b | family with sequence similarity 174, member B | 1 | 128936112 | 128989452 | Rat |
| 2322453 | LOC100360298 | hypothetical LOC100360298 | 1 | 128993748 | 129004331 | Rat |
| 1583786 | LOC365287 | similar to 60S ribosomal protein L26 | 1 | 129086322 | 129086803 | Rat |
| 621843 | St8sia2 | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 | 1 | 129158717 | 129191810 | Rat |
| 2322257 | LOC100360396 | hypothetical protein LOC100360396 | 1 | 129492866 | 129503306 | Rat |
| 620227 | Slco3a1 | solute carrier organic anion transporter family, member 3a1 | 1 | 129580126 | 130077110 | Rat |
| 2322111 | LOC100360445 | hypothetical LOC100360445 | 1 | 130228126 | 130294018 | Rat |
| 619716 | Sv2b | synaptic vesicle glycoprotein 2b | 1 | 130683155 | 130884752 | Rat |
| 1597758 | LOC685124 | hypothetical protein LOC685124 | 1 | 131052625 | 131053224 | Rat |
| 727893 | Akap13 | A kinase (PRKA) anchor protein 13 | 1 | 131052674 | 131360512 | Rat |
| 2321957 | LOC100360500 | hypothetical LOC100360500 | 1 | 131425867 | 131427106 | Rat |
| 1310815 | Klhl25 | kelch-like family member 25 | 1 | 131540949 | 131566141 | Rat |
| 1597690 | LOC685193 | similar to 60S ribosomal protein L7a | 1 | 131572413 | 131573212 | Rat |
| 1592100 | LOC293022 | similar to glyceraldehyde-3-phosphate dehydrogenase | 1 | 131574910 | 131575914 | Rat |
| 1596473 | LOC685223 | similar to ribosomal protein L36 | 1 | 131581425 | 131581780 | Rat |
| 1560280 | Agbl1 | ATP/GTP binding protein-like 1 | 1 | 131756893 | 131944875 | Rat |
| 1563786 | RGD1563786 | similar to Hmgb1 protein | 1 | 131810802 | 131830941 | Rat |
| 1595103 | LOC685345 | hypothetical protein LOC685345 | 1 | 133413865 | 133416754 | Rat |
| 1595087 | LOC685361 | hypothetical protein LOC685361 | 1 | 133416766 | 133417043 | Rat |
| 3214 | Ntrk3 | neurotrophic tyrosine kinase, receptor, type 3 | 1 | 133925530 | 134302139 | Rat |
| 1309123 | Mrpl46 | mitochondrial ribosomal protein L46 | 1 | 134498789 | 134507602 | Rat |
| 1559901 | Mrps11 | mitochondrial ribosomal protein S11 | 1 | 134507836 | 134517222 | Rat |
| 1309793 | Det1 | de-etiolated homolog 1 (Arabidopsis) | 1 | 134552235 | 134566070 | Rat |
| 1305051 | Aen | apoptosis enhancing nuclease | 1 | 134615998 | 134625367 | Rat |
| 1306407 | Isg20 | interferon stimulated exonuclease gene 20 | 1 | 134631524 | 134637868 | Rat |
| 68358 | Acan | aggrecan | 1 | 134787341 | 134848992 | Rat |
| 1308098 | Hapln3 | hyaluronan and proteoglycan link protein 3 | 1 | 134851830 | 134859702 | Rat |
| 3083 | Mfge8 | milk fat globule-EGF factor 8 protein | 1 | 134870029 | 134885431 | Rat |
| 1592639 | LOC685508 | similar to 60S ribosomal protein L27a | 1 | 134904772 | 134976954 | Rat |
| 1311389 | Abhd2 | abhydrolase domain containing 2 | 1 | 135025144 | 135111792 | Rat |
| 1309649 | Rlbp1 | retinaldehyde binding protein 1 | 1 | 135122063 | 135135420 | Rat |
| 2321863 | Fanci | Fanconi anemia, complementation group I | 1 | 135144029 | 135196828 | Rat |
| 620057 | Polg | polymerase (DNA directed), gamma | 1 | 135197075 | 135212178 | Rat |
| 1592552 | LOC685596 | similar to ubiquinol-cytochrome c reductase binding protein | 1 | 135239236 | 135239571 | Rat |
| 2319321 | LOC100361856 | 6.8 kDa mitochondrial proteolipid-like | 1 | 135242875 | 135243057 | Rat |
| 727859 | Rhcg | Rh family, C glycoprotein | 1 | 135361418 | 135386461 | Rat |
| 2321718 | LOC100360639 | cullin 4B | 1 | 135402897 | 135407594 | Rat |
| 1308541 | Ticrr | TOPBP1-interacting checkpoint and replication regulator | 1 | 135428695 | 135471349 | Rat |
| 1310310 | Kif7 | kinesin family member 7 | 1 | 135472621 | 135489513 | Rat |
| 2319082 | LOC100361998 | protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)-like | 1 | 135479707 | 135480103 | Rat |
| 3351 | Plin1 | perilipin 1 | 1 | 135497431 | 135509926 | Rat |
| 619842 | Pex11a | peroxisomal biogenesis factor 11 alpha | 1 | 135513735 | 135520816 | Rat |
| 1559862 | Wdr93 | WD repeat domain 93 | 1 | 135527818 | 135566862 | Rat |
| 2318883 | LOC100362099 | small nuclear ribonucleoprotein polypeptide E-like | 1 | 135543220 | 135543498 | Rat |
| 1311751 | Mesp1 | mesoderm posterior 1 homolog (mouse) | 1 | 135571777 | 135573295 | Rat |
| 1305959 | Mesp2 | mesoderm posterior 2 homolog (mouse) | 1 | 135590020 | 135592626 | Rat |
| 2991 | Anpep | alanyl (membrane) aminopeptidase | 1 | 135600751 | 135619208 | Rat |
| 1589076 | LOC685810 | hypothetical protein LOC685810 | 1 | 135624377 | 135625015 | Rat |
| 1586888 | Ap3s2 | adaptor-related protein complex 3, sigma 2 subunit | 1 | 135653104 | 135689454 | Rat |
| 1311021 | RGD1311021 | hypothetical LOC308765 | 1 | 135695647 | 135704728 | Rat |
| 1589045 | LOC685841 | hypothetical protein LOC685841 | 1 | 135696539 | 135705519 | Rat |
| 1306491 | Zfp710 | zinc finger protein 710 | 1 | 135861678 | 135868221 | Rat |
| 1597139 | Idh2 | isocitrate dehydrogenase 2 (NADP+), mitochondrial | 1 | 135876052 | 135895373 | Rat |
| 1589010 | LOC685876 | similar to MAK31-like protein | 1 | 135930774 | 135931146 | Rat |
| 1307872 | Sema4b | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B | 1 | 136001219 | 136031302 | Rat |
| 620133 | Cib1 | calcium and integrin binding 1 (calmyrin) | 1 | 136031865 | 136045153 | Rat |
| 1560277 | Gdpgp1 | GDP-D-glucose phosphorylase 1 | 1 | 136051942 | 136053122 | Rat |
| 1587820 | LOC685955 | hypothetical protein LOC685955 | 1 | 136058848 | 136059350 | Rat |
| 1310399 | Ttll13 | tubulin tyrosine ligase-like family, member 13 | 1 | 136059115 | 136075047 | Rat |
| 1583734 | Ngrn | neugrin, neurite outgrowth associated | 1 | 136075434 | 136081313 | Rat |
| 620644 | Vps33b | vacuolar protein sorting 33 homolog B (yeast) | 1 | 136085931 | 136109421 | Rat |
| 1311754 | Prc1 | protein regulator of cytokinesis 1 | 1 | 136112674 | 136133720 | Rat |
| 1309901 | Rccd1 | RCC1 domain containing 1 | 1 | 136134226 | 136139608 | Rat |
| 1305357 | Unc45a | unc-45 homolog A (C. elegans) | 1 | 136143883 | 136158600 | Rat |
| 1311839 | Hddc3 | HD domain containing 3 | 1 | 136161425 | 136163710 | Rat |
| 2318548 | LOC100362237 | ribosomal protein L35a-like | 1 | 136164904 | 136165236 | Rat |
| 1310238 | Man2a2 | mannosidase, alpha, class 2A, member 2 | 1 | 136168772 | 136189151 | Rat |
| 1564385 | Fes | feline sarcoma oncogene | 1 | 136199523 | 136208759 | Rat |
| 3274 | Furin | furin (paired basic amino acid cleaving enzyme) | 1 | 136209969 | 136222057 | Rat |
| 1308810 | Blm | Bloom syndrome, RecQ helicase-like | 1 | 136271573 | 136358077 | Rat |
| 1586613 | LOC686083 | similar to transducer of regulated CREB protein 3 | 1 | 136516477 | 136527829 | Rat |
| 2321520 | LOC100360738 | chromobox homolog 3-like | 1 | 136541454 | 136547422 | Rat |
| 1311884 | Iqgap1 | IQ motif containing GTPase activating protein 1 | 1 | 136552358 | 136642545 | Rat |
| 1585481 | Zfp29 | zinc finger protein 29 | 1 | 136710132 | 136710560 | Rat |
| 1585464 | LOC686135 | hypothetical protein LOC686135 | 1 | 136710937 | 136726485 | Rat |
| 1309666 | Crtc3 | CREB regulated transcription coactivator 3 | 1 | 136763253 | 136838520 | Rat |
| 1306429 | Wdr73 | WD repeat domain 73 | 1 | 137088347 | 137096492 | Rat |
| 1562710 | Nmb | neuromedin B | 1 | 137097463 | 137100207 | Rat |
| 2321277 | LOC100360881 | ribosomal protein L26-like | 1 | 137100358 | 137103655 | Rat |
| 69360 | Sec11a | SEC11 homolog A (S. cerevisiae) | 1 | 137109466 | 137126782 | Rat |
| 1308705 | Zfp592 | zinc finger protein 592 | 1 | 137188336 | 137244616 | Rat |
| 1309860 | Alpk3 | alpha-kinase 3 | 1 | 137256805 | 137303308 | Rat |
| 621223 | Slc28a1 | solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 | 1 | 137323995 | 137365983 | Rat |
| 735125 | Pde8a | phosphodiesterase 8A | 1 | 137415852 | 137544337 | Rat |
| 62027 | Rps17 | ribosomal protein S17 | 1 | 137552232 | 137554817 | Rat |
| 1310421 | Cpeb1 | cytoplasmic polyadenylation element binding protein 1 | 1 | 137556766 | 137666929 | Rat |
| 1308950 | Ap3b2 | adaptor-related protein complex 3, beta 2 subunit | 1 | 137672485 | 137675472 | Rat |
| 2321127 | LOC100360933 | cDNA sequence BC048679-like | 1 | 137706616 | 137709458 | Rat |
| 1566010 | RGD1566010 | RGD1566010 | 1 | 137737570 | 137738311 | Rat |
| 1305167 | Fsd2 | fibronectin type III and SPRY domain containing 2 | 1 | 137748690 | 137776360 | Rat |
| 1563506 | Whamm | WAS protein homolog associated with actin, golgi membranes and microtubules | 1 | 137785814 | 137814184 | Rat |
| 620705 | Homer2 | homer homolog 2 (Drosophila) | 1 | 137827128 | 137933089 | Rat |
| 2320929 | LOC100361031 | hypothetical LOC100361031 | 1 | 137950148 | 137980208 | Rat |
| 1310022 | Fam103a1 | family with sequence similarity 103, member A1 | 1 | 137980239 | 137986127 | Rat |
| 1305713 | RGD1305713 | similar to RIKEN cDNA 3110040N11 | 1 | 137997575 | 138004006 | Rat |
| 1310962 | Btbd1 | BTB (POZ) domain containing 1 | 1 | 138006565 | 138043662 | Rat |
| 1307978 | Tm6sf1 | transmembrane 6 superfamily member 1 | 1 | 138054145 | 138099713 | Rat |
| 628773 | Hdgfrp3 | hepatoma-derived growth factor, related protein 3 | 1 | 138098818 | 138130696 | Rat |
| 1309042 | Bnc1 | basonuclin 1 | 1 | 138189334 | 138201795 | Rat |
| 620578 | Sh3gl3 | SH3-domain GRB2-like 3 | 1 | 138398336 | 138529056 | Rat |
| 1585270 | LOC688738 | similar to LSM5 homolog, U6 small nuclear RNA associated | 1 | 138552211 | 138552459 | Rat |
| 1305155 | Adamtsl3 | ADAMTS-like 3 | 1 | 138563870 | 138876886 | Rat |
| 1562653 | Fam154b | family with sequence similarity 154, member B | 1 | 138905988 | 138920522 | Rat |
| 1306521 | Eftud1 | elongation factor Tu GTP binding domain containing 1 | 1 | 138920620 | 139044342 | Rat |
| 1306790 | Mex3b | mex3 homolog B (C. elegans) | 1 | 139135572 | 139139807 | Rat |
| 1585209 | LOC688799 | hypothetical protein LOC688799 | 1 | 139177053 | 139177695 | Rat |
| 1584156 | LOC688810 | hypothetical protein LOC688810 | 1 | 139220858 | 139228406 | Rat |
| 1566271 | RGD1566271 | similar to 60S ribosomal protein L7 | 1 | 139406707 | 139410190 | Rat |
| 1308063 | Tmc3 | transmembrane channel-like 3 | 1 | 139842574 | 139886756 | Rat |
| 1561783 | Stard5 | StAR-related lipid transfer (START) domain containing 5 | 1 | 139896268 | 139906134 | Rat |
| 1583872 | Il16 | interleukin 16 | 1 | 139908061 | 140000146 | Rat |
| 1310371 | RGD1310371 | similar to RIKEN cDNA 1700026D08 | 1 | 140036327 | 140061890 | Rat |
| 2320729 | LOC100361131 | androgen receptor N-terminal-interacting protein-like | 1 | 140124260 | 140125086 | Rat |
| 1311666 | Mesdc1 | mesoderm development candidate 1 | 1 | 140157358 | 140159377 | Rat |
| 1584083 | LOC688883 | hypothetical protein LOC688883 | 1 | 140159083 | 140159613 | Rat |
| 1310344 | Mesdc2 | mesoderm development candidate 2 | 1 | 140167851 | 140173514 | Rat |
| 1305254 | RGD1305254 | similar to transmembrane protein 2 | 1 | 140202914 | 140360061 | Rat |
| 1308210 | Abhd17c | abhydrolase domain containing 17C | 1 | 140382433 | 140423393 | Rat |
| 2154 | Arnt2 | aryl hydrocarbon receptor nuclear translocator 2 | 1 | 140535823 | 140646838 | Rat |
| 61932 | Fah | fumarylacetoacetate hydrolase | 1 | 140851975 | 140876187 | Rat |
| 1359317 | Zfand6 | zinc finger, AN1-type domain 6 | 1 | 140885701 | 140960486 | Rat |
| 2320689 | LOC100361172 | ubiquitin and ribosomal protein L40-like | 1 | 141050042 | 141050290 | Rat |
| 1333106 | Olr10 | olfactory receptor 10 | 1 | 141151954 | 141152901 | Rat |
| 1626046 | Vom2r-ps63 | vomeronasal 2 receptor, pseudogene 63 | 1 | 141183726 | 141203240 | Rat |
| 1334373 | Olr11 | olfactory receptor 11 | 1 | 141497722 | 141498669 | Rat |
| 708406 | Vom2r40 | vomeronasal 2 receptor, 40 | 1 | 141602288 | 141721711 | Rat |
| 1641977 | Vom2r-ps64 | vomeronasal 2 receptor, pseudogene 64 | 1 | 141602657 | 141603562 | Rat |
| 1561322 | Vom2r41 | vomeronasal 2 receptor, 41 | 1 | 141861806 | 141914331 | Rat |
| 1587138 | Vom2r-ps65 | vomeronasal 2 receptor, pseudogene 65 | 1 | 141957135 | 141976539 | Rat |
| 1587126 | Vom2r42 | vomeronasal 2 receptor, 42 | 1 | 142010227 | 142055405 | Rat |
| 1587109 | LOC679574 | similar to putative pheromone receptor (Go-VN3) | 1 | 142196652 | 142237718 | Rat |
| 1587090 | Vom2r43 | vomeronasal 2 receptor, 43 | 1 | 142267794 | 142290322 | Rat |
| 1333584 | Olr12 | olfactory receptor 12 | 1 | 142339329 | 142340252 | Rat |
| 1334399 | Olr13 | olfactory receptor 13 | 1 | 142363442 | 142364368 | Rat |
| 1332929 | Olr14 | olfactory receptor 14 | 1 | 142393184 | 142394125 | Rat |
| 1333967 | Olr15-ps | olfactory receptor pseudogene 15 | 1 | 142412398 | 142413335 | Rat |
| 1565278 | RGD1565278 | similar to ribosomal protein | 1 | 142431922 | 142432369 | Rat |
| 1333647 | Olr16 | olfactory receptor 16 | 1 | 142435591 | 142436541 | Rat |
| 1333998 | Olr17 | olfactory receptor 17 | 1 | 142443502 | 142444458 | Rat |
| 1333037 | Olr18-ps | olfactory receptor pseudogene 18 | 1 | 142478873 | 142479648 | Rat |
| 1584836 | LOC679705 | similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) | 1 | 142484528 | 142485551 | Rat |
| 1333281 | Olr19 | olfactory receptor 19 | 1 | 142491573 | 142492532 | Rat |
| 1591912 | LOC502349 | similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M) | 1 | 142500803 | 142501825 | Rat |
| 1332905 | Olr20 | olfactory receptor 20 | 1 | 142539267 | 142540259 | Rat |
| 1332817 | Olr21-ps | olfactory receptor pseudogene 21 | 1 | 142588631 | 142589468 | Rat |
| 1334240 | Olr22-ps | olfactory receptor pseudogene 22 | 1 | 142644685 | 142645681 | Rat |
| 1332664 | Olr23 | olfactory receptor 23 | 1 | 142677366 | 142678361 | Rat |
| 2322334 | LOC100360319 | hypothetical LOC100360319 | 1 | 142695026 | 142696832 | Rat |
| 1334267 | Olr24 | olfactory receptor 24 | 1 | 142710362 | 142711303 | Rat |
| 1333809 | Olr25 | olfactory receptor 25 | 1 | 142740112 | 142741104 | Rat |
| 1333180 | Olr26-ps | olfactory receptor pseudogene 26 | 1 | 142768894 | 142769070 | Rat |
| 1332768 | Olr27 | olfactory receptor 27 | 1 | 142782825 | 142783766 | Rat |
| 1591911 | LOC502350 | similar to 60S acidic ribosomal protein P1 | 1 | 142790957 | 142800862 | Rat |
| 1334427 | Olr28-ps | olfactory receptor pseudogene 28 | 1 | 142811980 | 142812209 | Rat |
| 1334054 | Olr29 | olfactory receptor 29 | 1 | 142819617 | 142820624 | Rat |
| 1333057 | Olr30 | olfactory receptor 30 | 1 | 142835594 | 142836523 | Rat |
| 1332591 | Olr31-ps | olfactory receptor pseudogene 31 | 1 | 142864907 | 142865101 | Rat |
| 1333387 | Olr32 | olfactory receptor 32 | 1 | 142871429 | 142872436 | Rat |
| 1334239 | Olr33-ps | olfactory receptor pseudogene 33 | 1 | 142882030 | 142892995 | Rat |
| 1333763 | Olr34 | olfactory receptor 34 | 1 | 142922930 | 142923868 | Rat |
| 70963 | Folh1 | folate hydrolase 1 | 1 | 142936379 | 143010358 | Rat |
| 1626013 | Vom2r-ps66 | vomeronasal 2 receptor, pseudogene 66 | 1 | 143028825 | 143029721 | Rat |
| 1598125 | Vom2r-ps67 | vomeronasal 2 receptor, pseudogene 67 | 1 | 143105977 | 143136561 | Rat |
| 1585754 | Vom2r81 | vomeronasal 2, receptor 81 | 1 | 143105977 | 143136773 | Rat |
| 1626045 | Vom2r-ps68 | vomeronasal 2 receptor, pseudogene 68 | 1 | 143184487 | 143224989 | Rat |
| 2321947 | LOC100360510 | BRCA1/BRCA2-containing complex, subunit 3-like | 1 | 143276455 | 143415591 | Rat |
| 620600 | Nox4 | NADPH oxidase 4 | 1 | 143415816 | 143603554 | Rat |
| 1589755 | Tyr | tyrosinase | 1 | 143641257 | 143746315 | Rat |
| 1596883 | LOC680004 | hypothetical protein LOC680004 | 1 | 143825741 | 143848797 | Rat |
| 2746 | Grm5 | glutamate receptor, metabotropic 5 | 1 | 143857225 | 144477419 | Rat |
| 2445 | Ctsc | cathepsin C | 1 | 144629802 | 144661183 | Rat |
| 628752 | Rab38 | RAB38, member RAS oncogene family | 1 | 144783919 | 144864573 | Rat |
| 1565897 | RGD1565897 | similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) | 1 | 144967927 | 144969043 | Rat |
| 1598293 | LOC365305 | similar to Phosphoglycerate kinase 1 | 1 | 145348438 | 145349523 | Rat |
| 2324099 | LOC100362759 | ribosomal protein S19-like | 1 | 145540657 | 145541091 | Rat |
| 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | Hypothalamic-pituitary-adrenal axis | adrenal gland weight | 1 | 28716493 | 124749065 | Rat |
| 2313402 | Anxrr24 | Anxiety related response QTL 24 | | | Anxiety response | domestication | 1 | 43426139 | 146971983 | Rat |
| 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | Bone structure | femoral neck cortical area | 1 | 43872710 | 162735928 | Rat |
| 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | Glucose level | | 1 | 43872827 | 204280278 | Rat |
| 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 2.9 | | Neuroinflammation | | 1 | 55083934 | 154002647 | Rat |
| 1582234 | Gluco18 | Glucose level QTL 18 | 3.4 | .0003 | Glucose level | uptake | 1 | 79749065 | 124749065 | Rat |
| 4889494 | Scort2 | Serum corticosterone level QTL 2 | 4.2 | | Hormone level | corticosterone | 1 | 80851478 | 125851478 | Rat |
| 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | .0001 | Cardiac mass | | 1 | 81342810 | 225814178 | Rat |
| 631519 | Pia11 | Pristane induced arthritis QTL 11 | 5.3 | | Joint/bone inflammation | arthritis severity | 1 | 83489176 | 186472032 | Rat |
| 738022 | Anxrr13 | Anxiety related response QTL 13 | 4.6 | .00039 | Anxiety response | open field inner locomotion | 1 | 83945235 | 128945235 | Rat |
| 724529 | Cm16 | Cardiac mass QTL 16 | 2.7 | | Cardiac mass | | 1 | 87465281 | 153578547 | Rat |
| 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | Body weight | | 1 | 90282040 | 184857893 | Rat |
| 724521 | Uae1 | Urinary albumin excretion QTL 1 | 3.8 | .0001 | Renal function | urine albumin level | 1 | 90282040 | 185923619 | Rat |
| 1302788 | Scl19 | Serum cholesterol QTL 19 | 4.6 | .001 | Lipid level | cholesterol level | 1 | 90306033 | 124749065 | Rat |
| 1300153 | Bp171 | Blood pressure QTL 171 | 3.37 | | Blood pressure | salt-loaded diastolic | 1 | 90448902 | 145865373 | Rat |
| 724567 | Tcas6 | Tongue tumor susceptibility QTL 6 | 6.85 | | Tongue tumor susceptibility | | 1 | 92101613 | 146971983 | Rat |
| 2293142 | Bp314 | Blood pressure QTL 314 | | | Blood pressure | systolic | 1 | 94471673 | 139471673 | Rat |
| 1331800 | Scl25 | Serum cholesterol level QTL 25 | 3.013 | | Lipid level | cholesterol | 1 | 94473940 | 134980682 | Rat |
| 1331793 | Bp200 | Blood pressure QTL 200 | 3.71601 | | Blood pressure | systolic | 1 | 94473940 | 176855135 | Rat |
| 1331751 | Bp199 | Blood pressure QTL 199 | 3.60022 | | Blood pressure | diastolic | 1 | 94473940 | 186472032 | Rat |
| 1331749 | Hrtrt11 | Heart rate QTL 11 | 2.973 | | Heart rate | | 1 | 94473940 | 203303100 | Rat |
| 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | Glucose level | fasting | 1 | 94473940 | 203416143 | Rat |
| 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | Blood pressure | systolic | 1 | 94624828 | 220639653 | Rat |
| 61399 | Tcat1 | Tongue tumor resistance QTL 1 | 3.3 | | Tongue tumor resistance | | 1 | 101971983 | 146971983 | Rat |
| 1641897 | Alcrsp1 | Alcohol response QTL 1 | | | Alcohol response | loss of righting reflex | 1 | 102248992 | 147248992 | Rat |
| 2317833 | Alcrsp19 | Alcohol response QTL 19 | 12.4 | .001 | Alcohol response | loss of righting reflex | 1 | 102248992 | 147248992 | Rat |
| 61370 | Mcs3 | Mammary carcinoma susceptibility QTL 3 | 2.15 | | Mammary tumor susceptibility | | 1 | 102532145 | 134980682 | Rat |
| 1354623 | Rf46 | Renal function QTL 46 | 3.8 | | Creatinine level | serum | 1 | 103149923 | 154075310 | Rat |
| 1354591 | Cm36 | Cardiac mass QTL 36 | 4.1 | | Cardiac mass | left ventricle adjusted for tibia length | 1 | 103149923 | 206567907 | Rat |
| 1354615 | Cm32 | Cardiac mass QTL 32 | 5.2 | | Cardiac mass | left ventricle | 1 | 103149923 | 206567907 | Rat |
| 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | Blood pressure | pulse pressure | 1 | 103149923 | 224426393 | Rat |
| 2303591 | Gluco41 | Glucose level QTL 41 | 2 | | Glucose level | fasting | 1 | 103483490 | 148483490 | Rat |
| 631496 | Bp97 | Blood pressure QTL 97 | 3.08 | | Blood pressure | systolic | 1 | 106445165 | 163516043 | Rat |
| 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | Renal function | calcium excretion | 1 | 112148733 | 250430505 | Rat |
| 631684 | Bp117 | Blood pressure QTL 117 | 8.3 | | Blood pressure | systolic | 1 | 112480604 | 157480604 | Rat |
| 1300158 | Bp173 | Blood pressure QTL 173 | 3.48 | | Blood pressure | salt-loaded time series calculation | 1 | 115946374 | 189900838 | Rat |
| 2313060 | Bss71 | Bone structure and strength QTL 71 | 2.6 | .0001 | Bone structure | | 1 | 119780411 | 186391852 | Rat |
| 631205 | Bp196 | Blood pressure QTL 196 | 4 | .0001 | Blood pressure | mean arterial | 1 | 119780561 | 204280278 | Rat |
| 2293140 | Bp313 | Blood pressure QTL 313 | | | Blood pressure | systolic | 1 | 122991895 | 167991895 | Rat |
| 1598850 | Bp297 | Blood pressure QTL 297 | 2.1 | | Blood pressure | systolic | 1 | 123689796 | 168689796 | Rat |
| 1598866 | Bp287 | Blood pressure QTL 287 | 5.1 | | Blood pressure | systolic | 1 | 123689796 | 168689796 | Rat |
| 2325726 | Eae30 | Experimental allergic encephalomyelitis QTL 30 | | | Brain/spinal cord inflammation | | 1 | 124308081 | 130290315 | Rat |
| 61442 | Strs1 | Sensitivity to stroke QTL 1 | 7.4 | | Stroke susceptibility | latency until stroke | 1 | 124471914 | 169471914 | Rat |
| 631544 | Bp84 | Blood pressure QTL 84 | 5.6 | | Blood pressure | systolic | 1 | 124614679 | 186391887 | Rat |
| 1578770 | Stresp23 | Stress response QTL 23 | | | Stress response | sympathetic hyperreactivity to air-jet stress | 1 | 124614679 | 187092492 | Rat |
| 1358189 | Cstrr1 | Cold stress response QTL 1 | | .0001 | Hormone level | norepinephrine | 1 | 124614679 | 187092492 | Rat |
| 1641895 | Bp298 | Blood pressure QTL 298 | | | Blood pressure | mean arterial | 1 | 124614679 | 187092492 | Rat |
| 61344 | Bp29 | Blood pressure QTL 29 | 7.5 | | Blood pressure | systolic | 1 | 124614852 | 134980526 | Rat |
| 631549 | Bp89 | Blood pressure QTL 89 | 5.7 | | Blood pressure | | 1 | 124614852 | 206574205 | Rat |
| 631570 | Bp94 | Blood pressure QTL 94 | | .0001 | Blood pressure | systolic | 1 | 124748920 | 145648920 | Rat |
| 634348 | Bp138 | Blood pressure QTL 138 | | | Blood pressure | | 1 | 126938969 | 172691061 | Rat |
| 631654 | Bp107 | Blood pressure QTL 107 | | | Blood pressure | systolic | 1 | 126938969 | 185923619 | Rat |
| 631202 | Gluco13 | Glucose level QTL 13 | | .0001 | Glucose level | postprandial | 1 | 133566530 | 163141556 | Rat |
| 738006 | Anxrr14 | Anxiety related response QTL 14 | 4 | .00035 | Anxiety response | plus maze-open arm | 1 | 133624682 | 178624682 | Rat |
| 738028 | Anxrr12 | Anxiety related response QTL 12 | 4.9 | .00001 | Anxiety response | plus maze-center | 1 | 133624682 | 178624682 | Rat |
| 61346 | Rf2 | Renal disease susceptibility QTL 2 | 3.7 | | Renal function | urine albumin excretion rate to body weight ratio | 1 | 134980526 | 146971983 | Rat |
| 631199 | Cm23 | Cardiac mass QTL 23 | 4.6 | .0004 | Cardiac mass | left ventricle | 1 | 134980682 | 176854992 | Rat |
| 737977 | Bp160 | Blood pressure QTL 160 | | .001 | Blood pressure | systolic | 1 | 134980682 | 185690881 | Rat |
| 1558645 | Bw55 | Body weight QTL 55 | 3.2 | .004 | Body weight | | 1 | 136792830 | 181792830 | Rat |
| 6893347 | Bw98 | Body weight QTL 98 | .2 | .53 | Body weight | | 1 | 136792830 | 181792830 | Rat |
| 6893361 | Bw104 | Body weight QTL 104 | .59 | .27 | Body weight | | 1 | 136792830 | 181792830 | Rat |
| 631206 | Niddm40 | Non-insulin dependent diabetes mellitus QTL 40 | | | Glucose level | postprandial | 1 | 139026999 | 167337781 | Rat |
| 71118 | Thym1 | Thymus enlargement QTL 1 | 10.68 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat |
| 724550 | Thym3 | Thymus enlargement QTL 3 | 7.82 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat |