Rps10 (ribosomal protein S10) - Rat Genome Database

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Gene: Rps10 (ribosomal protein S10) Rattus norvegicus
Analyze
Symbol: Rps10
Name: ribosomal protein S10
RGD ID: 621024
Description: Enables tRNA binding activity. A structural constituent of ribosome. Involved in ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to human RPS10 (ribosomal protein S10); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S10; small ribosomal subunit protein eS10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps10-ps21   Rps10-ps3   Rps10l1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,696,135 - 5,700,863 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,696,135 - 5,700,150 (-)EnsemblGRCr8
GRCr8 Ensembl677,766,103 - 77,766,669 (+)EnsemblGRCr8
mRatBN7.2205,694,313 - 5,698,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,694,313 - 5,699,044 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl656,669,103 - 56,669,600 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl672,030,876 - 72,031,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,406,979 - 6,411,579 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,768,746 - 5,773,346 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,248,401 - 6,253,001 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,215,762 - 7,220,331 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,215,774 - 7,219,548 (-)Ensemblrn6Rnor6.0
Rnor_5.0209,418,116 - 9,422,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,849,327 - 5,853,893 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,257,606 - 7,262,175 (-)NCBICelera
RGSC_v3.1205,849,544 - 5,854,121 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trimethylbenzene  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dioxygen  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
Monobutylphthalate  (ISO)
N-nitrosodiethylamine  (EXP)
Nutlin-3  (ISO)
perfluorooctanoic acid  (EXP,ISO)
rimonabant  (ISO)
rotenone  (ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
titanium dioxide  (ISO)
Torularhodin  (ISO)
Tributyltin oxide  (ISO)
trichloroacetic acid  (EXP)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosolic ribosome  (IEA,ISO)
cytosolic small ribosomal subunit  (IBA,IDA,IEA,ISO)
nucleolus  (IEA,ISO,ISS)
ribonucleoprotein complex  (IEA)
ribosome  (IEA)
synapse  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. The primary structure of rat ribosomal protein S10. Gluck A, etal., Eur J Biochem 1989 Jun 1;182(1):105-9.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Two-dimensional electrophoretic analysis of ribosomal proteins from chronically injured liver. Gressner AM J Clin Chem Clin Biochem. 1979 Aug;17(8):541-5.
7. Ribosomal proteins S2, S6, S10, S14, S15 and S25 are localized on the surface of mammalian 40 S subunits and stabilize their conformation. A study with immobilized trypsin. Marion MJ and Marion C, FEBS Lett. 1988 May 23;232(2):281-5.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
12. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
13. Pituitary tumor-transforming gene protein associates with ribosomal protein S10 and a novel human homologue of DnaJ in testicular cells. Pei L J Biol Chem. 1999 Jan 29;274(5):3151-8.
14. Identification of the proteins interacting with tRNA in rat liver small ribosomal subunits. Reboud AM, etal., FEBS Lett. 1983 Jul 25;158(2):285-8.
15. GOA pipeline RGD automated data pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8706699   PMID:15489334   PMID:15883184   PMID:16854843   PMID:19946888   PMID:20159986   PMID:21423176   PMID:22658674   PMID:22681889   PMID:22871113   PMID:23376485   PMID:23979707  
PMID:24625528   PMID:28131823   PMID:29476059   PMID:35352799  


Genomics

Comparative Map Data
Rps10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,696,135 - 5,700,863 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl205,696,135 - 5,700,150 (-)EnsemblGRCr8
GRCr8 Ensembl677,766,103 - 77,766,669 (+)EnsemblGRCr8
mRatBN7.2205,694,313 - 5,698,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,694,313 - 5,699,044 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl656,669,103 - 56,669,600 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl672,030,876 - 72,031,440 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx206,406,979 - 6,411,579 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,768,746 - 5,773,346 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,248,401 - 6,253,001 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,215,762 - 7,220,331 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,215,774 - 7,219,548 (-)Ensemblrn6Rnor6.0
Rnor_5.0209,418,116 - 9,422,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,849,327 - 5,853,893 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera207,257,606 - 7,262,175 (-)NCBICelera
RGSC_v3.1205,849,544 - 5,854,121 (-)NCBI
Cytogenetic Map20p12NCBI
RPS10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,417,454 - 34,426,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,417,447 - 34,426,237 (-)Ensemblhg38GRCh38
GRCh37634,385,231 - 34,393,846 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,493,209 - 34,501,854 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34634,493,210 - 34,501,830NCBI
Celera635,939,570 - 35,948,220 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,107,972 - 34,116,617 (-)NCBIHuRef
CHM1_1634,388,245 - 34,396,900 (-)NCBICHM1_1
T2T-CHM13v2.0634,241,303 - 34,249,921 (-)NCBIT2T-CHM13v2.0
Rps10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,849,389 - 27,854,218 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,849,392 - 27,855,643 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381727,630,415 - 27,635,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,630,418 - 27,636,669 (-)Ensemblmm10GRCm38
MGSCv371727,767,374 - 27,772,187 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361727,358,018 - 27,362,831 (-)NCBIMGSCv36mm8
Celera1728,182,398 - 28,187,208 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.59NCBI
Rps10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,600,246 - 2,604,022 (-)Ensembl
ChiLan1.0NW_0049554372,600,219 - 2,604,821 (-)NCBIChiLan1.0ChiLan1.0
LOC100973697
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2548,888,359 - 48,897,095 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1644,755,748 - 44,764,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0633,982,735 - 33,991,470 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,083,552 - 35,092,231 (-)NCBIPanPan1.1PanPan1.1panPan2
RPS10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,713,984 - 3,720,149 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,713,980 - 3,719,780 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha123,729,785 - 3,735,949 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0124,050,973 - 4,057,139 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,050,969 - 4,056,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1123,712,937 - 3,719,062 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,794,250 - 3,800,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,893,184 - 3,899,342 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,309,293 - 39,315,015 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,646,153 - 24,651,211 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,645,235 - 24,650,940 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,435,150 - 30,442,886 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1730,435,146 - 30,442,791 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,109,882 - 35,117,486 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,668,265 - 37,676,789 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604434,338,127 - 34,346,697 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,774,201 - 22,778,248 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475422,773,327 - 22,777,867 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1186,211,715 - 6,216,294 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps10
98 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:146
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000033907
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 23 116 271 180 178 116 117 116 12 570 289 11 230 124 147 62 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM057870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X13549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000033907   ⟹   ENSRNOP00000061642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,696,177 - 5,700,150 (-)Ensembl
mRatBN7.2 Ensembl205,694,355 - 5,699,044 (-)Ensembl
Rnor_6.0 Ensembl207,215,774 - 7,219,548 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000043250   ⟹   ENSRNOP00000043693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl672,030,876 - 72,031,440 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107117   ⟹   ENSRNOP00000077780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,696,135 - 5,700,150 (-)Ensembl
mRatBN7.2 Ensembl205,694,313 - 5,699,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122312   ⟹   ENSRNOP00000107003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,696,833 - 5,700,150 (-)Ensembl
RefSeq Acc Id: NM_031109   ⟹   NP_112371
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,696,135 - 5,700,744 (-)NCBI
mRatBN7.2205,694,313 - 5,698,922 (-)NCBI
Rnor_6.0207,215,762 - 7,220,331 (-)NCBI
Rnor_5.0209,418,116 - 9,422,685 (-)NCBI
RGSC_v3.4205,849,327 - 5,853,893 (-)RGD
Celera207,257,606 - 7,262,175 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279576   ⟹   XP_063135646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,696,159 - 5,700,863 (-)NCBI
RefSeq Acc Id: XM_063279577   ⟹   XP_063135647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,696,159 - 5,700,862 (-)NCBI
RefSeq Acc Id: NP_112371   ⟸   NM_031109
- UniProtKB: P63326 (UniProtKB/Swiss-Prot),   D3ZCN9 (UniProtKB/TrEMBL),   A6JJM8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061642   ⟸   ENSRNOT00000033907
Ensembl Acc Id: ENSRNOP00000077780   ⟸   ENSRNOT00000107117
Ensembl Acc Id: ENSRNOP00000043693   ⟸   ENSRNOT00000043250
RefSeq Acc Id: XP_063135646   ⟸   XM_063279576
- Peptide Label: isoform X1
- UniProtKB: D3ZJY5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135647   ⟸   XM_063279577
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UI18 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107003   ⟸   ENSRNOT00000122312
Protein Domains
Plectin/eS10 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63326-F1-model_v2 AlphaFold P63326 1-165 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621024 AgrOrtholog
BioCyc Gene G2FUF-4463 BioCyc
Ensembl Genes ENSRNOG00000000490 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000066637 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000068503 Ensembl
Ensembl Transcript ENSRNOT00000043250.6 UniProtKB/Swiss-Prot
  ENSRNOT00000107117 ENTREZGENE
  ENSRNOT00000107117.1 UniProtKB/Swiss-Prot
  ENSRNOT00000122312 ENTREZGENE
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6921499 IMAGE-MGC_LOAD
InterPro Rps10 UniProtKB/Swiss-Prot
  S10_plectin_N UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:81773 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72791 IMAGE-MGC_LOAD
NCBI Gene 81773 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S10 UniProtKB/Swiss-Prot
  PTHR12146 UniProtKB/Swiss-Prot
Pfam S10_plectin UniProtKB/Swiss-Prot
PhenoGen Rps10 PhenoGen
RatGTEx ENSRNOG00000000490 RatGTEx
  ENSRNOG00000066637 RatGTEx
  ENSRNOG00000068503 RatGTEx
UniProt A0A0H2UI18 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMW4_RAT UniProtKB/TrEMBL
  A6JJM8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCN9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJY5 ENTREZGENE, UniProtKB/TrEMBL
  P63326 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P09900 UniProtKB/Swiss-Prot
  Q9DCR5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rps10  ribosomal protein S10      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rps10  ribosomal protein S10      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 165 amino acids 633993