Rps10-ps3 (ribosomal protein S10, pseudogene 3) - Rat Genome Database

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Gene: Rps10-ps3 (ribosomal protein S10, pseudogene 3) Rattus norvegicus
Analyze
Symbol: Rps10-ps3
Name: ribosomal protein S10, pseudogene 3
RGD ID: 1589441
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC680635; similar to 40S ribosomal protein S10
Related Functional Gene: Rps10  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87131,465,402 - 131,465,942 (+)NCBIGRCr8
mRatBN7.27129,586,361 - 129,586,901 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx7131,393,599 - 131,394,139 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07133,619,144 - 133,619,684 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07133,531,636 - 133,532,176 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,049,209 - 140,049,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07139,192,154 - 139,192,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,180,855 - 137,181,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7126,077,790 - 126,078,261 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Rps10-ps3
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat


Expression


Sequence


RefSeq Acc Id: XR_146104
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07140,049,209 - 140,049,680 (+)NCBI
Sequence:
RefSeq Acc Id: XR_147081
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera7126,077,790 - 126,078,261 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL87061 (Get FASTA)   NCBI Sequence Viewer  


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-32139 BioCyc
NCBI Gene 680635 ENTREZGENE
PhenoGen Rps10-ps3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rps10-ps3  ribosomal protein S10, pseudogene 3  LOC680635  similar to 40S ribosomal protein S10  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC680635  similar to 40S ribosomal protein S10      Symbol and Name status set to provisional 70820 PROVISIONAL