| 1303043 | Clic1 | chloride intracellular channel 1 | 20 | 3498935 | 3842500 | Rat |
| 3876 | Tnf | tumor necrosis factor | 20 | 3661000 | 3663618 | Rat |
| 1303162 | Ltb | lymphotoxin beta (TNF superfamily, member 3) | 20 | 3666524 | 3668369 | Rat |
| 620077 | Lst1 | leukocyte specific transcript 1 | 20 | 3698568 | 3701564 | Rat |
| 727881 | Ncr3 | natural cytotoxicity triggering receptor 3 | 20 | 3701807 | 3707278 | Rat |
| 61924 | Aif1 | allograft inflammatory factor 1 | 20 | 3714428 | 3716327 | Rat |
| 1303199 | E230034O05Rik | E230034O05Rik gene | 20 | 3719963 | 3722120 | Rat |
| 1303025 | Prrc2a | proline-rich coiled-coil 2A | 20 | 3724278 | 3737795 | Rat |
| 71064 | Bag6 | BCL2-associated athanogene 6 | 20 | 3739593 | 3752311 | Rat |
| 620773 | Apom | apolipoprotein M | 20 | 3754604 | 3757204 | Rat |
| 1303038 | G4 | G4 protein | 20 | 3757345 | 3759671 | Rat |
| 1303304 | Gpank1 | G patch domain and ankyrin repeats 1 | 20 | 3761295 | 3764338 | Rat |
| 619978 | Csnk2b | casein kinase 2, beta polypeptide | 20 | 3764565 | 3768985 | Rat |
| 1303101 | Ly6g5b | lymphocyte antigen 6 complex, locus G5B | 20 | 3769818 | 3770754 | Rat |
| 735180 | Ly6g5c | lymphocyte antigen 6 complex, locus G5C | 20 | 3773183 | 3777262 | Rat |
| 1303164 | Abhd16a | abhydrolase domain containing 16A | 20 | 3782759 | 3797620 | Rat |
| 1594424 | Rps25-ps2 | ribosomal protein S25, pseudogene 2 | 20 | 3799009 | 3799463 | Rat |
| 1303333 | Ly6g6f | lymphocyte antigen 6 complex, locus G6F | 20 | 3801118 | 3805986 | Rat |
| 1303112 | Ly6g6e | lymphocyte antigen 6 complex, locus G6E | 20 | 3808707 | 3810443 | Rat |
| 1303064 | Ly6g6d | lymphocyte antigen 6 complex, locus G6D | 20 | 3813286 | 3816525 | Rat |
| 1302999 | Ly6g6c | lymphocyte antigen 6 complex, locus G6C | 20 | 3817976 | 3820673 | Rat |
| 1303269 | G6b | G6b protein | 20 | 3821900 | 3823719 | Rat |
| 1302955 | Ddah2 | dimethylarginine dimethylaminohydrolase 2 | 20 | 3829767 | 3836141 | Rat |
| 1303008 | Msh5 | mutS homolog 5 (E. coli) | 20 | 3845731 | 3862011 | Rat |
| 1359359 | Sapcd1 | suppressor APC domain containing 1 | 20 | 3862654 | 3864441 | Rat |
| 1303137 | Vwa7 | von Willebrand factor A domain containing 7 | 20 | 3863665 | 3874196 | Rat |
| 3950 | Vars | valyl-tRNA synthetase | 20 | 3874447 | 3888969 | Rat |
| 1591982 | G7e-ps1 | G7e, pseudogene 1 | 20 | 3900726 | 3901709 | Rat |
| 1590214 | Rpl13-ps1 | ribosomal protein L13, pseudogene 1 | 20 | 3908012 | 3908634 | Rat |
| 1593284 | Hspa1a | heat shock protein 1A | 20 | 3945716 | 3959552 | Rat |
| 2840 | Hspa1b | heat shock protein 1B | 20 | 3955274 | 3957748 | Rat |
| 1566118 | RGD1566118 | RGD1566118 | 20 | 3959539 | 3964122 | Rat |
| 3163 | Neu1 | neuraminidase 1 | 20 | 3999317 | 4003800 | Rat |
| 1303167 | Slc44a4 | solute carrier family 44, member 4 | 20 | 4005154 | 4021270 | Rat |
| 1302972 | Ehmt2 | euchromatic histone lysine N-methyltransferase 2 | 20 | 4021679 | 4033709 | Rat |
| 1302958 | Zbtb12 | zinc finger and BTB domain containing 12 | 20 | 4039186 | 4048083 | Rat |
| 2231 | C2 | complement component 2 | 20 | 4051146 | 4071909 | Rat |
| 2204 | Cfb | complement factor B | 20 | 4072124 | 4077802 | Rat |
| 1303325 | Nelfe | negative elongation factor complex member E | 20 | 4077925 | 4081561 | Rat |
| 1303059 | Skiv2l | superkiller viralicidic activity 2-like (S. cerevisiae ) | 20 | 4084422 | 4093652 | Rat |
| 1303267 | Dom3z | DOM-3 homolog Z (C. elegans) | 20 | 4093718 | 4095802 | Rat |
| 1359601 | Stk19 | serine/threonine kinase 19 | 20 | 4095981 | 4105509 | Rat |
| 620005 | C4a | complement component 4A (Rodgers blood group) | 20 | 4106123 | 4145904 | Rat |
| 2461 | Cyp21a1 | cytochrome P450, family 21, subfamily a, polypeptide 1 | 20 | 4125357 | 4128518 | Rat |
| 3887 | Tnxa-ps1 | tenascin XA, pseudogene 1 | 20 | 4128066 | 4129421 | Rat |
| 1594402 | Tnxb | tenascin XB | 20 | 4133875 | 4178049 | Rat |
| 1303317 | Atf6b | activating transcription factor 6 beta | 20 | 4192185 | 4200036 | Rat |
| 1303227 | Fkbpl | FK506 binding protein-like | 20 | 4201108 | 4202576 | Rat |
| 1359348 | Prrt1 | proline-rich transmembrane protein 1 | 20 | 4219837 | 4223478 | Rat |
| 620375 | Ppt2 | palmitoyl-protein thioesterase 2 | 20 | 4225630 | 4234653 | Rat |
| 1549706 | Egfl8 | EGF-like-domain, multiple 8 | 20 | 4235508 | 4237864 | Rat |
| 1303287 | Agpat1 | 1-acylglycerol-3-phosphate O-acyltransferase 1 | 20 | 4237798 | 4245723 | Rat |
| 1588458 | Rnf5 | ring finger protein 5, E3 ubiquitin protein ligase | 20 | 4248002 | 4250448 | Rat |
| 69258 | Ager | advanced glycosylation end product-specific receptor | 20 | 4250613 | 4253540 | Rat |
| 1303084 | Pbx2 | pre-B-cell leukemia homeobox 2 | 20 | 4253962 | 4259185 | Rat |
| 1303014 | Gpsm3 | G-protein signaling modulator 3 | 20 | 4259883 | 4261744 | Rat |
| 1303282 | Notch4 | notch 4 | 20 | 4263205 | 4287312 | Rat |
| 2321323 | LOC100360835 | serine/threonine kinase 19-like | 20 | 4296629 | 4299675 | Rat |
| 1588459 | Stk19-ps | serine/threonine kinase 19 pseudogene | 20 | 4297488 | 4299995 | Rat |
| 1591983 | C4b | complement component 4B (Chido blood group) | 20 | 4300687 | 4315882 | Rat |
| 1303332 | Cyp21a1-ps | cytochrome P450, family 21, subfamily a, polypeptide 1, pseudogene | 20 | 4319779 | 4335827 | Rat |
| 1624210 | RGD1624210 | similar to butyrophilin-like 7 | 20 | 4339504 | 4349053 | Rat |
| 1598537 | Btnl5 | butyrophilin-like 5 | 20 | 4371620 | 4381225 | Rat |
| 1303010 | Btnl8 | butyrophilin-like 8 | 20 | 4403712 | 4415128 | Rat |
| 2321275 | LOC100360883 | envelope-like | 20 | 4419749 | 4428267 | Rat |
| 1303124 | Btnl7 | butyrophilin-like 7 | 20 | 4437293 | 4447525 | Rat |
| 2321125 | LOC100360935 | envelope-like | 20 | 4455979 | 4472691 | Rat |
| 1588460 | Btnl6-ps1 | butyrophilin-like 6, pseudogene 1 | 20 | 4471149 | 4479124 | Rat |
| 1598538 | Btn3a2 | butyrophilin, subfamily 3, member A2 | 20 | 4471149 | 4528035 | Rat |
| 2321077 | LOC100360983 | envelope glycoprotein-like | 20 | 4486470 | 4491667 | Rat |
| 1597063 | Tesb | testis specific basic protein | 20 | 4532358 | 4579409 | Rat |
| 1303262 | Btnl3 | butyrophilin-like 3 | 20 | 4596415 | 4611846 | Rat |
| 620731 | Btnl2 | butyrophilin-like 2 (MHC class II associated) | 20 | 4613726 | 4625383 | Rat |
| 1593283 | RT1-Da | RT1 class II, locus Da | 20 | 4636310 | 4641282 | Rat |
| 1595922 | RT1-Db2 | RT1 class II, locus Db2 | 20 | 4643873 | 4662490 | Rat |
| 1303212 | Arrb2-ps | arrestin, beta 2, pseudogene | 20 | 4646715 | 4647684 | Rat |
| 1593282 | RT1-Db1 | RT1 class II, locus Db1 | 20 | 4671489 | 4681058 | Rat |
| 1595867 | RT1-Ba | RT1 class II, locus Ba | 20 | 4697971 | 4702564 | Rat |
| 3469 | RT1-Bb | RT1 class II, locus Bb | 20 | 4730559 | 4736201 | Rat |
| 1595814 | RT1-DOb | RT1 class II, locus DOb | 20 | 4753940 | 4759648 | Rat |
| 3818 | Tap2 | transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) | 20 | 4770446 | 4784488 | Rat |
| 3426 | Psmb8 | proteasome (prosome, macropain) subunit, beta type, 8 | 20 | 4786260 | 4789223 | Rat |
| 3817 | Tap1 | transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) | 20 | 4790363 | 4800730 | Rat |
| 3427 | Psmb9 | proteasome (prosome, macropain) subunit, beta type, 9 | 20 | 4801187 | 4806608 | Rat |
| 735096 | RT1-DMb | RT1 class II, locus DMb | 20 | 4829535 | 4836772 | Rat |
| 735053 | RT1-DMa | RT1 class II, locus DMa | 20 | 4843458 | 4846861 | Rat |
| 1303324 | Brd2 | bromodomain containing 2 | 20 | 4864606 | 4871813 | Rat |
| 3477 | RT1-DOa | RT1 class II, locus DOa | 20 | 4890410 | 4894048 | Rat |
| 1595921 | RT1-Ha | RT1 class II, locus Ha | 20 | 4902458 | 4907767 | Rat |
| 2322333 | LOC100360320 | rCG64293-like | 20 | 4909334 | 4916050 | Rat |
| 1595866 | RT1-Hb-ps1 | RT1 class II, locus Hb, pseudogene 1 | 20 | 4913121 | 4917113 | Rat |
| 2373 | Col11a2 | collagen, type XI, alpha 2 | 20 | 4924452 | 4953310 | Rat |
| 3611 | Rxrb | retinoid X receptor beta | 20 | 4954336 | 4960880 | Rat |
| 1593280 | Slc39a7 | solute carrier family 39 (zinc transporter), member 7 | 20 | 4961280 | 4964652 | Rat |
| 1303158 | Hsd17b8 | hydroxysteroid (17-beta) dehydrogenase 8 | 20 | 4964860 | 4966855 | Rat |
| 3576 | Ring1 | ring finger protein 1 | 20 | 4968251 | 4972149 | Rat |
| 1359610 | RT1-A3 | RT1 class I, locus A3 | 20 | 4998645 | 5002204 | Rat |
| 1594398 | Sacm2l-ps2 | Sacm2l-ps2 pseudogene | 20 | 5011011 | 5012147 | Rat |
| 1594399 | Sacm2l-ps1 | Sacm2l-ps1 pseudogene | 20 | 5012243 | 5012303 | Rat |
| 1594400 | LOC224733l-2 | LOC224733l-2 pseudogene | 20 | 5017790 | 5018073 | Rat |
| 1595923 | RT1-A2 | RT1 class Ia, locus A2 | 20 | 5021816 | 5025341 | Rat |
| 1591984 | Cdk2ap1-ps1 | Cdk2ap1-pseudogene 1 | 20 | 5028677 | 5029027 | Rat |
| 1594401 | LOC224733l-1 | LOC224733l-1 pseudogene | 20 | 5045073 | 5052851 | Rat |
| 1303017 | RT1-CE6 | RT1 class I, locus CE6 | 20 | 5056763 | 5057715 | Rat |
| 1595924 | RT1-A1 | RT1 class Ia, locus A1 | 20 | 5056763 | 5060280 | Rat |
| 3618 | Vps52 | vacuolar protein sorting 52 homolog (S. cerevisiae) | 20 | 5073753 | 5083339 | Rat |
| 3595 | Rps18 | ribosomal protein S18 | 20 | 5083626 | 5087304 | Rat |
| 620328 | B3galt4 | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 | 20 | 5087855 | 5089430 | Rat |
| 2209 | Wdr46 | WD repeat domain 46 | 20 | 5089611 | 5097383 | Rat |
| 1303006 | Pfdn6 | prefoldin subunit 6 | 20 | 5097725 | 5099199 | Rat |
| 1302985 | Rgl2 | ral guanine nucleotide dissociation stimulator-like 2 | 20 | 5100260 | 5108016 | Rat |
| 3819 | Tapbp | TAP binding protein (tapasin) | 20 | 5109807 | 5117758 | Rat |
| 1359627 | Zbtb22 | zinc finger and BTB domain containing 22 | 20 | 5118097 | 5121262 | Rat |
| 621227 | Daxx | death-domain associated protein | 20 | 5121854 | 5127601 | Rat |
| 1303072 | AA926063 | AA926063gene | 20 | 5128225 | 5140738 | Rat |
| 2320927 | LOC100361033 | rCG44733-like | 20 | 5133024 | 5142946 | Rat |
| 1591985 | Sec61-ps | Sec61 pseudogene | 20 | 5142607 | 5143145 | Rat |
| 1591986 | Rps25-ps1 | ribosomal protein S25, pseudogene 1 | 20 | 5148862 | 5149529 | Rat |
| 1359118 | Kifc1 | kinesin family member C1 | 20 | 5150810 | 5169264 | Rat |
| 1303205 | Phf1 | PHD finger protein 1 | 20 | 5170270 | 5175027 | Rat |
| 1303306 | Cuta | cutA divalent cation tolerance homolog (E. coli) | 20 | 5175113 | 5176689 | Rat |
| 621090 | Syngap1 | synaptic Ras GTPase activating protein 1 | 20 | 5178523 | 5208449 | Rat |
| 1303050 | Zbtb9 | zinc finger and BTB domain containing 9 | 20 | 5212213 | 5215215 | Rat |
| 621635 | Bak1 | BCL2-antagonist/killer 1 | 20 | 5255954 | 5264593 | Rat |
| 1359729 | Ggnbp1 | gametogenetin-binding protein 1 | 20 | 5265353 | 5271653 | Rat |
| 2934 | Itpr3 | inositol 1,4,5-trisphosphate receptor, type 3 | 20 | 5292430 | 5357502 | Rat |
| 2320880 | LOC100361080 | hypothetical protein LOC100361080 | 20 | 5334068 | 5336556 | Rat |
| 1306917 | Mnf1 | mitochondrial nucleoid factor 1 | 20 | 5358000 | 5369728 | Rat |
| 1584104 | Ip6k3 | inositol hexakisphosphate kinase 3 | 20 | 5379966 | 5425313 | Rat |
| 1305341 | Lemd2 | LEM domain containing 2 | 20 | 5425689 | 5436856 | Rat |
| 1642907 | Mln | motilin | 20 | 5447053 | 5451752 | Rat |
| 2745 | Grm4 | glutamate receptor, metabotropic 4 | 20 | 5627733 | 5727274 | Rat |
| 1597433 | LOC689053 | hypothetical protein LOC689053 | 20 | 5766210 | 5767455 | Rat |
| 628699 | Hmga1 | high mobility group AT-hook 1 | 20 | 5769052 | 5772269 | Rat |
| 1564450 | RGD1564450 | RGD1564450 | 20 | 5773534 | 5775502 | Rat |
| 1310183 | Nudt3 | nudix (nucleoside diphosphate linked moiety X)-type motif 3 | 20 | 5789033 | 5841633 | Rat |
| 621024 | Rps10 | ribosomal protein S10 | 20 | 5849327 | 5853893 | Rat |
| 1587284 | LOC367535 | similar to ribosomal protein L24 | 20 | 5862873 | 5873277 | Rat |
| 3247 | Pacsin1 | protein kinase C and casein kinase substrate in neurons 1 | 20 | 5875450 | 5921738 | Rat |
| 1594842 | Spdef | SAM pointed domain containing ets transcription factor | 20 | 5927866 | 5942091 | Rat |
| 1563561 | LOC499407 | LRRGT00097 | 20 | 5964921 | 5997888 | Rat |
| 1559829 | LOC294154 | similar to chromosome 6 open reading frame 106 isoform a | 20 | 5965992 | 6033724 | Rat |
| 1306065 | Snrpc | small nuclear ribonucleoprotein polypeptide C | 20 | 6045678 | 6063842 | Rat |
| 1307264 | Uhrf1bp1 | UHRF1 binding protein 1 | 20 | 6067567 | 6108468 | Rat |
| 1305626 | Taf11 | TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor | 20 | 6113417 | 6119513 | Rat |
| 1309183 | Anks1a | ankyrin repeat and sterile alpha motif domain containing 1A | 20 | 6121316 | 6274822 | Rat |
| 1359387 | Tcp11 | t-complex protein 11 | 20 | 6283357 | 6293412 | Rat |
| 1307945 | Def6 | differentially expressed in FDCP 6 homolog (mouse) | 20 | 6391694 | 6469830 | Rat |
| 1306239 | Zfp523 | zinc finger protein 523 | 20 | 6423716 | 6446498 | Rat |
| 3370 | Ppard | peroxisome proliferator-activated receptor delta | 20 | 6479108 | 6544255 | Rat |
| 2320546 | LOC100361217 | hypothetical protein LOC100361217 | 20 | 6539663 | 6549457 | Rat |
| 1561045 | Fance | Fanconi anemia, complementation group E | 20 | 6549701 | 6566916 | Rat |
| 620497 | Rpl10a | ribosomal protein L10A | 20 | 6569083 | 6571641 | Rat |
| 1311583 | Tead3 | TEA domain family member 3 | 20 | 6572336 | 6591723 | Rat |
| 1311062 | Tulp1 | tubby like protein 1 | 20 | 6592448 | 6604349 | Rat |
| 1309155 | Fkbp5 | FK506 binding protein 5 | 20 | 6637478 | 6686768 | Rat |
| 1306008 | Armc12 | armadillo repeat containing 12 | 20 | 6769884 | 6780377 | Rat |
| 1592336 | Clpsl2 | colipase-like 2 | 20 | 6789877 | 6792700 | Rat |
| 2363 | Clps | colipase, pancreatic | 20 | 6802428 | 6804608 | Rat |
| 1359370 | Lhfpl5 | lipoma HMGIC fusion partner-like 5 | 20 | 6814056 | 6824225 | Rat |
| 1308272 | Srpk1 | SRSF protein kinase 1 | 20 | 6829410 | 6870877 | Rat |
| 1308898 | Slc26a8 | solute carrier family 26, member 8 | 20 | 6898665 | 6937594 | Rat |
| 70496 | Mapk14 | mitogen activated protein kinase 14 | 20 | 6939249 | 7000378 | Rat |
| 1592271 | LOC689491 | hypothetical protein LOC689491 | 20 | 7040432 | 7040695 | Rat |
| 3045 | Mapk13 | mitogen activated protein kinase 13 | 20 | 7055313 | 7064405 | Rat |
| 1591109 | LOC689518 | hypothetical protein LOC689518 | 20 | 7085251 | 7085850 | Rat |
| 1591099 | LOC689528 | hypothetical protein LOC689528 | 20 | 7085978 | 7086397 | Rat |
| 1306868 | Brpf3 | bromodomain and PHD finger containing, 3 | 20 | 7090877 | 7121564 | Rat |
| 1306685 | Pnpla1 | patatin-like phospholipase domain containing 1 | 20 | 7139384 | 7173440 | Rat |
| 1591066 | LOC689561 | hypothetical protein LOC689561 | 20 | 7180632 | 7197629 | Rat |
| 2321717 | LOC100360640 | small testis-specific peroxisomal protein | 20 | 7225694 | 7226754 | Rat |
| 1309887 | Kctd20 | potassium channel tetramerisation domain containing 20 | 20 | 7244665 | 7253138 | Rat |
| 1309455 | Stk38 | serine/threonine kinase 38 | 20 | 7257546 | 7264441 | Rat |
| 1309233 | Srsf3 | serine/arginine-rich splicing factor 3 | 20 | 7316649 | 7326580 | Rat |
| 1560150 | Rab44 | RAB44, member RAS oncogene family | 20 | 7332351 | 7452568 | Rat |
| 69328 | Cdkn1a | cyclin-dependent kinase inhibitor 1A | 20 | 7376325 | 7386778 | Rat |
| 1589925 | LOC689653 | similar to G protein-coupled receptor 120 | 20 | 7451407 | 7452387 | Rat |
| 1308021 | Cpne5 | copine V | 20 | 7453643 | 7535366 | Rat |
| 1309119 | Ppil1 | peptidylprolyl isomerase (cyclophilin)-like 1 | 20 | 7548896 | 7565640 | Rat |
| 735065 | RGD735065 | similar to GI:13385412-like protein splice form I | 20 | 7570992 | 7610178 | Rat |
| 1304760 | Pi16 | peptidase inhibitor 16 | 20 | 7636282 | 7645221 | Rat |
| 1309262 | Mtch1 | mitochondrial carrier 1 | 20 | 7649782 | 7673289 | Rat |
| 1309840 | Fgd2 | FYVE, RhoGEF and PH domain containing 2 | 20 | 7684764 | 7702116 | Rat |
| 3330 | Pim1 | pim-1 oncogene | 20 | 7817403 | 7821800 | Rat |
| 1564987 | Tbc1d22b | TBC1 domain family, member 22B | 20 | 7880190 | 7921453 | Rat |
| 1308035 | Rnf8 | ring finger protein 8, E3 ubiquitin protein ligase | 20 | 7929802 | 7954697 | Rat |
| 1307801 | Ftsjd2 | FtsJ methyltransferase domain containing 2 | 20 | 7970034 | 8014387 | Rat |
| 1588733 | Ccdc167 | coiled-coil domain containing 167 | 20 | 8014954 | 8029711 | Rat |
| 1588720 | LOC689768 | hypothetical protein LOC689768 | 20 | 8082811 | 8111966 | Rat |
| 1597190 | LOC288777 | similar to 40S ribosomal protein S15 (RIG protein) | 20 | 8134282 | 8134717 | Rat |
| 1307031 | Mdga1 | MAM domain containing glycosylphosphatidylinositol anchor 1 | 20 | 8149686 | 8200149 | Rat |
| 1307113 | Zfand3 | zinc finger, AN1-type domain 3 | 20 | 8383832 | 8523596 | Rat |
| 2320879 | LOC100361081 | BTB (POZ) domain containing 9 | 20 | 8532699 | 8815346 | Rat |
| 2318584 | LOC100362201 | BTB (POZ) domain containing 9 | 20 | 8746092 | 8839817 | Rat |
| 2702 | Glo1 | glyoxalase 1 | 20 | 8900984 | 8919001 | Rat |
| 619986 | Dnah8 | dynein, axonemal, heavy chain 8 | 20 | 8936173 | 9199913 | Rat |
| 1591072 | LOC689555 | similar to 40S ribosomal protein S12 | 20 | 9003057 | 9003440 | Rat |
| 1591084 | LOC689543 | similar to Eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor-interacting protein 1) (TRIP-1) | 20 | 9102577 | 9103546 | Rat |
| 2703 | Glp1r | glucagon-like peptide 1 receptor | 20 | 9225881 | 9264184 | Rat |
| 1566039 | Umodl1 | uromodulin-like 1 | 20 | 9275199 | 9348637 | Rat |
| 620294 | Abcg1 | ATP-binding cassette, subfamily G (WHITE), member 1 | 20 | 9390485 | 9459574 | Rat |
| 3847 | Tff3 | trefoil factor 3, intestinal | 20 | 9469888 | 9474604 | Rat |
| 620709 | Tff2 | trefoil factor 2 | 20 | 9492341 | 9510558 | Rat |
| 620707 | Tff1 | trefoil factor 1 | 20 | 9526674 | 9530534 | Rat |
| 724519 | Bp144 | Blood pressure QTL 144 | | .001 | Blood pressure | mean arterial | 20 | 1 | 3663618 | Rat |
| 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | Alcohol response | loss of righting reflex | 20 | 1 | 27477794 | Rat |
| 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | .05 | Alcohol response | | 20 | 1 | 27477794 | Rat |
| 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | .0024 | Colorectal carcinoma resistance | | 20 | 1 | 32560683 | Rat |
| 6893685 | Bw111 | Body weight QTL 111 | 2.7 | .004 | Body weight | salt-loaded | 20 | 1 | 32910115 | Rat |
| 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | Glucose level | | 20 | 1616332 | 46616332 | Rat |
| 2306850 | Pia40 | Pristane induced arthritis QTL 40 | | .0001 | Joint/bone inflammation | pristane induced | 20 | 1616449 | 5447380 | Rat |
| 61448 | Ciaa1 | CIA Autoantibody QTL 1 | 30 | .001 | Anti-type II collagen autoantibody titer | collagen induced | 20 | 2790511 | 4530895 | Rat |
| 61472 | Aia1 | Adjuvant induced arthritis QTL 1 | 18 | .001 | Joint/bone inflammation | adjuvant induced | 20 | 2790511 | 4530895 | Rat |
| 2317057 | Aia27 | Adjuvant induced arthritis QTL 27 | 2.83 | | Joint/bone inflammation | adjuvant induced | 20 | 3039759 | 37383914 | Rat |
| 1598816 | Memor12 | Memory QTL 12 | 2.4 | | Memory | navigation-spatial | 20 | 3055886 | 48055886 | Rat |
| 1300152 | Bp195 | Blood pressure QTL 195 | 3.46 | | Blood pressure | salt-loaded systolic | 20 | 3660638 | 9534510 | Rat |
| 1331772 | Cdexp2 | CD45RC expression in CD8 T cells QTL 2 | 5.7 | | CD8 T cell CD45RC expression level | | 20 | 3660638 | 10410227 | Rat |
| 737973 | Pia21 | Pristane induced arthritis QTL 21 | 3.3 | | Joint/bone inflammation | arthritis severity | 20 | 3660646 | 4740814 | Rat |
| 61432 | Cia1 | Collagen induced arthritis QTL 1 | | | Joint/bone inflammation | type II collagen induced | 20 | 3660646 | 14605852 | Rat |
| 7175099 | Tcs2 | T cell selection QTL 2 | | | T cell selection | expression | 20 | 4625383 | 4829535 | Rat |
| 61474 | Eae1 | Experimental allergic encephalomyelitis QTL 1 | 3 | | Brain/spinal cord inflammation | severity of disease | 20 | 4740609 | 6880472 | Rat |
| 1558640 | Prcs2 | Prostate cancer susceptibility QTL 2 | 3.3 | | Prostate tumor susceptibility | lesions with ACI-type nuclei | 20 | 4740609 | 18411969 | Rat |
| 4889857 | Pur27 | Proteinuria QTL 27 | 12.2 | .001 | Renal function | urine protein level | 20 | 4740609 | 18411969 | Rat |
| 7175096 | Tcs1 | T cell selection QTL 1 | | | T cell selection | expression | 20 | 4864606 | 5176689 | Rat |
| 70154 | Insul2 | Insulin level QTL 2 | 3.75 | | Insulin level | post-pancreatectomy | 20 | 6880472 | 18245770 | Rat |
| 1581577 | Pur15 | Proteinuria QTL 15 | 4.38 | .0002 | Renal function | urine protein level | 20 | 8286533 | 18411969 | Rat |
| 4889870 | Pur30 | Proteinuria QTL 30 | 19 | .005 | Renal function | urine protein level | 20 | 8286533 | 28734502 | Rat |
| 631265 | Iresp1 | Immunoglobin response QTL1 | 8.3 | | Anti-DNA antibody level | | 20 | 9301974 | 13963223 | Rat |