Timp3 (TIMP metallopeptidase inhibitor 3) - Rat Genome Database

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Gene: Timp3 (TIMP metallopeptidase inhibitor 3) Rattus norvegicus
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Symbol: Timp3
Name: TIMP metallopeptidase inhibitor 3
RGD ID: 3865
Description: Predicted to enable metalloendopeptidase inhibitor activity and zinc ion binding activity. Involved in several processes, including cellular response to peptide; mesenchymal cell differentiation involved in bone development; and negative regulation of vascular associated smooth muscle cell proliferation. Predicted to be located in basement membrane. Predicted to be active in extracellular matrix and extracellular space. Biomarker of sciatic neuropathy and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in Sorsby's fundus dystrophy; breast carcinoma; and urinary bladder cancer. Orthologous to human TIMP3 (TIMP metallopeptidase inhibitor 3); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: metalloproteinase inhibitor 3; TIMP-3; tissue inhibitor of metalloproteinase 3; tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory); tissue inhibitor of metalloproteinases 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,408,539 - 19,459,558 (-)NCBIGRCr8
mRatBN7.2717,520,827 - 17,571,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl717,521,919 - 17,571,839 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx719,480,687 - 19,531,680 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0721,639,451 - 21,690,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0721,420,352 - 21,471,347 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0723,543,125 - 23,594,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl723,544,215 - 23,594,133 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0723,693,364 - 23,744,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4719,677,144 - 19,727,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1719,686,693 - 19,737,062 (-)NCBI
Celera714,761,240 - 14,810,915 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 27 rows

  
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Original Reference(s)
Timp3Ratbreast cancer disease_progressionISOTIMP3 (Homo sapiens)2290416 RGD 
Timp3Ratbreast carcinoma  ISOTIMP3 (Homo sapiens)2290409associated with Tumor Virus Infections and DNA:hypermethylation:promoterRGD 
Timp3Ratbreast carcinoma disease_progressionISOTIMP3 (Homo sapiens)2290413protein:decreased expression:breastRGD 
Timp3Ratchoriocarcinoma  ISOTIMP3 (Homo sapiens)2290418DNA more ...RGD 
Timp3RatEndometrial Neoplasms disease_progressionISOTIMP3 (Homo sapiens)2290420protein:increased expression:endometriumRGD 
Timp3RatEndotoxemia  IEP 2290426 RGD 
Timp3RatExperimental Autoimmune Encephalomyelitis  IEP 1559178protein:increased expression:spinal cordRGD 
Timp3RatExperimental Diabetes Mellitus  ISOTimp3 (Mus musculus)2312482mRNA:increased expression:glomerulusRGD 
Timp3RatFemoral Fractures disease_progressionIEP 151893486 RGD 
Timp3RatHereditary Eye Diseases susceptibilityISOTIMP3 (Homo sapiens)1600153protein:mutation: more ...RGD 
Timp3RatKidney Neoplasms  ISOTIMP3 (Homo sapiens)2290419DNA:hypermethylation:promoterRGD 
Timp3Ratlung adenocarcinoma  ISOTIMP3 (Homo sapiens)151708716mRNA:decreased expression:lung (human)RGD 
Timp3Ratlung non-small cell carcinoma disease_progressionISOTIMP3 (Homo sapiens)151708743 RGD 
Timp3RatLymphatic Metastasis  ISOTIMP3 (Homo sapiens)2290437associated with Breast Neoplasms and mRNA:increased expression:breastRGD 
Timp3RatOvarian Neoplasms disease_progressionISOTIMP3 (Homo sapiens)2290414protein:increased expression:ovaryRGD 
Timp3Ratpreretinal fibrosis  ISOTIMP3 (Homo sapiens)2312481 RGD 
Timp3Ratprostate cancer disease_progressionISOTIMP3 (Homo sapiens)2290417mRNA:decreased expression:prostate glandRGD 
Timp3Ratrenal cell carcinoma  ISOTIMP3 (Homo sapiens)2290421mRNA:decreased expression:kidneyRGD 
Timp3RatReperfusion Injury  IEP 2290424protein:decreased expression:brainRGD 
Timp3Ratsciatic neuropathy  IEP 151893491RNA:decreased expression:dorsal root ganglion neuronRGD 
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Original Reference(s)
Timp3Ratarteriovenous malformations of the brain  ISOTIMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Cerebral arteriovenous malformationClinVarPMID:25741868
Timp3Ratfundus dystrophy  ISOTIMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:19478078 more ...
Timp3Ratmuscular dystrophy-dystroglycanopathy type B6  ISOTIMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy type B6ClinVarPMID:28492532
Timp3RatPseudoinflammatory Fundus Dystrophy, Finnish Type  ISOTIMP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Fundus dystrophy more ...ClinVarPMID:25741868 and PMID:28492532
Timp3RatSorsby's fundus dystrophy  ISOTIMP3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10854443 more ...
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Timp3Ratasthma  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16926187
Timp3Ratbladder disease  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23527093
Timp3Ratcolitis  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24548422
Timp3Ratliver disease  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19784758
Timp3Ratmacular degeneration  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26691988
Timp3RatNeoplasm Invasiveness  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:23109338
Timp3Ratschistosomiasis  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23527093
Timp3RatSkin Neoplasms  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36499314
Timp3RatSorsby's fundus dystrophy  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Timp3RatSpontaneous Abortions  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18539642
Timp3RatStomach Neoplasms  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16367923
Timp3Rattoxic encephalopathy  ISOTIMP3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19784758
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Original Reference(s)
Timp3Ratdilated cardiomyopathy  ISSTimp3 (Mus musculus)13592920 MouseDO 
Timp3RatSorsby's fundus dystrophy  ISSTimp3 (Mus musculus)13592920OMIM:136900MouseDO 
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Original Reference(s)
Timp3RatSorsby's fundus dystrophy  ISOTIMP3 (Homo sapiens)7240710 OMIM 

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Timp3Rat(-)-epigallocatechin 3-gallate multiple interactionsISOTIMP3 (Homo sapiens)6480464[Sulindac co-treated with epigallocatechin gallate] results in decreased expression of TIMP3 mRNACTDPMID:12628509
Timp3Rat(S)-nicotine multiple interactionsISOTIMP3 (Homo sapiens)6480464[Nicotine co-treated with lipopolysaccharide and E. coli O26-B6] affects the expression of TIMP3 mRNACTDPMID:18986645
Timp3Rat(S)-nicotine multiple interactionsISOTimp3 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Timp3Rat(S)-nicotine affects expressionISOTIMP3 (Homo sapiens)6480464Nicotine affects the expression of TIMP3 mRNACTDPMID:18986645
Timp3Rat1,1-dichloroethene decreases expressionISOTimp3 (Mus musculus)6480464vinylidene chloride results in decreased expression of TIMP3 mRNACTDPMID:26682919
Timp3Rat1-chloro-2,4-dinitrobenzene increases expressionISOTIMP3 (Homo sapiens)6480464Dinitrochlorobenzene results in increased expression of TIMP3 mRNACTDPMID:16314067
Timp3Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine decreases expressionISOTimp3 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Timp3Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOTimp3 (Mus musculus)6480464[Nicotine co-treated with 1-Methyl-4-phenyl-1 more ...CTDPMID:20230807
Timp3Rat17alpha-ethynylestradiol affects expressionISOTimp3 (Mus musculus)6480464Ethinyl Estradiol affects the expression of TIMP3 mRNACTDPMID:17555576
Timp3Rat17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of TIMP3 mRNACTDPMID:15866537 and PMID:17351261
Timp3Rat17alpha-ethynylestradiol multiple interactionsISOTimp3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TIMP3 mRNACTDPMID:17942748
Timp3Rat17alpha-ethynylestradiol increases expressionISOTimp3 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of TIMP3 mRNACTDPMID:17942748
Timp3Rat17beta-estradiol multiple interactionsISOTIMP3 (Homo sapiens)6480464[Estradiol binds to ESR2 protein] which results in increased expression of TIMP3 mRNA more ...CTDPMID:19619570 more ...
Timp3Rat17beta-estradiol decreases expressionISOTimp3 (Mus musculus)6480464Estradiol results in decreased expression of TIMP3 mRNACTDPMID:39298647
Timp3Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of TIMP3 mRNACTDPMID:32145629
Timp3Rat17beta-estradiol decreases expressionISOTIMP3 (Homo sapiens)6480464Estradiol results in decreased expression of TIMP3 mRNACTDPMID:16474171 more ...
Timp3Rat2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISOTimp3 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
Timp3Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTIMP3 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of TIMP3 mRNACTDPMID:19619570
Timp3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of TIMP3 mRNACTDPMID:34747641
Timp3Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOTimp3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of TIMP3 mRNACTDPMID:15034205 more ...

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Biological Process
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Original Reference(s)
Timp3Ratcellular response to hypoxia  IEP 152025191 RGD 
Timp3Ratcellular response to interleukin-6  IEP 151893491 RGD 
Timp3Ratcellular response to peptide  IEP 2290355 RGD 
Timp3Ratmesenchymal cell differentiation involved in bone development  IMP 151893486 RGD 
Timp3Ratnegative regulation of membrane protein ectodomain proteolysis involved_inIEAUniProtKB:P35625 and ensembl:ENSP000002660851600115GO_REF:0000107EnsemblGO_REF:0000107
Timp3Ratnegative regulation of membrane protein ectodomain proteolysis involved_inIBAPANTHER:PTN000931945 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Timp3Ratnegative regulation of membrane protein ectodomain proteolysis involved_inISOTIMP3 (Homo sapiens)1624291 PMID:18383040RGDPMID:18383040
Timp3Ratnegative regulation of metalloendopeptidase activity involved_inISOTimp3 (Mus musculus)1624291 PMID:24812324RGDPMID:24812324
Timp3Ratnegative regulation of proteolysis  IMP 2290425 RGD 
Timp3Ratnegative regulation of vascular associated smooth muscle cell proliferation  IMP 152025191 RGD 
Timp3Ratresponse to amino acid  IEP 2290426 RGD 
Timp3Ratresponse to cytokine involved_inIBAPANTHER:PTN002625950 and Timp3 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Timp3Ratresponse to folic acid  IEP 2290422 RGD 
Timp3Ratresponse to hormone involved_inIBAPANTHER:PTN002625950 and Timp3 (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Timp3Ratresponse to hormone  IEP 2290459 RGD 
Timp3Ratresponse to mechanical stimulus  IEP 2290423 RGD 
Timp3Ratresponse to muscle activity  IEP 11054152 RGD 
Timp3Ratresponse to nutrient levels  IEP 11054152 RGD 
Timp3Rattissue regeneration  IEP 1600154 RGD 
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Cellular Component

  
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Timp3Ratbasement membrane located_inIEAUniProtKB:P39876 and ensembl:ENSMUSP000000202341600115GO_REF:0000107EnsemblGO_REF:0000107
Timp3Ratbasement membrane located_inISOTimp3 (Mus musculus)1624291 PMID:12950084RGDPMID:12950084
Timp3Ratextracellular matrix is_active_inIBAMGI:98752 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Timp3Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Timp3Ratextracellular space is_active_inIBAPANTHER:PTN000931945 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
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Timp3Ratenzyme inhibitor activity enablesIEAUniProtKB-KW:KW-04811600115GO_REF:0000043UniProtGO_REF:0000043
Timp3Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Timp3Ratmetalloendopeptidase inhibitor activity enablesIBAFB:FBgn0025879 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Timp3Ratmetalloendopeptidase inhibitor activity enablesIEAInterPro:IPR0018201600115GO_REF:0000002InterProGO_REF:0000002
Timp3Ratpeptidase inhibitor activity enablesIEAUniProtKB-KW:KW-0483 and UniProtKB-KW:KW-06461600115GO_REF:0000043UniProtGO_REF:0000043
Timp3Ratprotein binding enablesISOTIMP3 (Homo sapiens)1624291UniProtKB:P50052 more ...RGDPMID:18344519 and PMID:18638486
Timp3Ratzinc ion binding enablesISSUniProtKB:P160351600115GO_REF:0000024UniProtGO_REF:0000024

RGD Manual Annotations


  
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Original Reference(s)
Timp3Ratangiotensin II signaling pathway via AT2 receptor   ISOTIMP3 (Homo sapiens)5133679 RGD 

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#
Reference Title
Reference Citation
1. Tissue inhibitor of metalloproteinase-3 induces a Fas-associated death domain-dependent type II apoptotic pathway. Bond M, etal., J Biol Chem 2002 Apr 19;277(16):13787-95.
2. Cellular localization of tissue inhibitors of metalloproteinases in the rat ovary throughout pseudopregnancy. Curry TE Jr and Wheeler SE, Biol Reprod 2002 Dec;67(6):1943-51.
3. Promoter hypermethylation profile of kidney cancer. Dulaimi E, etal., Clin Cancer Res. 2004 Jun 15;10(12 Pt 1):3972-9.
4. Exercise training and return to a well-balanced diet activate the neuregulin 1/ErbB pathway in skeletal muscle of obese rats. Ennequin G, etal., J Physiol. 2015 Jun 15;593(12):2665-77. doi: 10.1113/JP270026. Epub 2015 May 14.
5. Inhibition of diabetic nephropathy by a GH antagonist: a molecular analysis. Esposito C, etal., Kidney Int. 1996 Aug;50(2):506-14.
6. Differential spatial distribution and temporal regulation of tissue inhibitor of metalloproteinase mRNA expression during rat central nervous system development. Fager N and Jaworski DM, Mech Dev. 2000 Nov;98(1-2):105-9.
7. Sorsby fundus dystrophy: reevaluation of variable expressivity in patients carrying a TIMP3 founder mutation. Felbor U, etal., Arch Ophthalmol. 1997 Dec;115(12):1569-71.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Thyroid hormone induces myocardial matrix degradation by activating matrix metalloproteinase-1. Ghose Roy S, etal., Matrix Biol. 2007 May;26(4):269-79. Epub 2006 Dec 29.
10. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
11. Evidence for a role of the Simian Virus 40 in human breast carcinomas. Hachana M, etal., Breast Cancer Res Treat. 2008 Jan 18;.
12. mRNA expression of matrix metalloproteases and their inhibitors differs in subtypes of renal cell carcinomas. Hagemann T, etal., Eur J Cancer. 2001 Oct;37(15):1839-46.
13. Tissue inhibitor of metalloproteinases-3 promoter methylation is an independent prognostic factor for bladder cancer. Hoque MO, etal., J Urol. 2008 Feb;179(2):743-7. Epub 2007 Dec 20.
14. Expression of matrix metalloproteinases and endogenous inhibitors within ascending aortic aneurysms of patients with Marfan syndrome. Ikonomidis JS, etal., Circulation. 2006 Jul 4;114(1 Suppl):I365-70.
15. Inhibition of microRNA-222 up-regulates TIMP3 to promotes osteogenic differentiation of MSCs from fracture rats with type 2 diabetes mellitus. Jiang C, etal., J Cell Mol Med. 2020 Jan;24(1):686-694. doi: 10.1111/jcmm.14777. Epub 2019 Nov 6.
16. Zhonghua wai ke za zhi [Chinese journal of surgery] Jiang X, etal., Zhonghua Wai Ke Za Zhi. 2000 Apr;38(4):291-3, 19.
17. RNA constitution and estrogen-responsive gene expression in the ovariectomized rat uterus. Kamata R, etal., Anal Biochem. 2005 Jun 1;341(1):131-40.
18. Prognostic relevance of uPAR-del4/5 and TIMP-3 mRNA expression levels in breast cancer. Kotzsch M, etal., Eur J Cancer. 2005 Nov;41(17):2760-8. Epub 2005 Oct 26.
19. Intracerebroventricular administration of an endothelin ETB receptor agonist increases expression of tissue inhibitor of matrix metalloproteinase-1 and -3 in rat brain. Koyama Y, etal., Neuroscience. 2007 Jul 13;147(3):620-30. Epub 2007 Jun 6.
20. Negative correlation of cytoplasm TIMP3 with miR-222 indicates a good prognosis for NSCLC. Lei Y, etal., Onco Targets Ther. 2018 Sep 6;11:5551-5557. doi: 10.2147/OTT.S172522. eCollection 2018.
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PMID:8654952   PMID:11869290   PMID:12477932   PMID:12950084   PMID:15052653   PMID:18383040   PMID:18636553   PMID:18993041   PMID:19389837   PMID:20551380   PMID:21630459   PMID:23256480  
PMID:23376485   PMID:24006456   PMID:24560960   PMID:24727088   PMID:24812324   PMID:25028660   PMID:25245272   PMID:26686417   PMID:27068509   PMID:27339256   PMID:27559042   PMID:28230313  
PMID:29742504   PMID:31161659   PMID:31922222   PMID:32432759   PMID:32648125   PMID:38824271  



Timp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8719,408,539 - 19,459,558 (-)NCBIGRCr8
mRatBN7.2717,520,827 - 17,571,850 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl717,521,919 - 17,571,839 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx719,480,687 - 19,531,680 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0721,639,451 - 21,690,578 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0721,420,352 - 21,471,347 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0723,543,125 - 23,594,170 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl723,544,215 - 23,594,133 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0723,693,364 - 23,744,404 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4719,677,144 - 19,727,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1719,686,693 - 19,737,062 (-)NCBI
Celera714,761,240 - 14,810,915 (-)NCBICelera
Cytogenetic Map7q13NCBI
TIMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382232,801,705 - 32,863,041 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2232,801,705 - 32,863,041 (+)EnsemblGRCh38hg38GRCh38
GRCh372233,197,691 - 33,259,028 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,526,802 - 31,589,028 (+)NCBINCBI36Build 36hg18NCBI36
Build 342231,521,361 - 31,583,581NCBI
Celera2216,999,013 - 17,061,296 (+)NCBICelera
Cytogenetic Map22q12.3ENTREZGENE
HuRef2216,154,700 - 16,216,984 (+)NCBIHuRef
CHM1_12233,156,307 - 33,218,500 (+)NCBICHM1_1
T2T-CHM13v2.02233,266,136 - 33,327,517 (+)NCBIT2T-CHM13v2.0
Timp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391086,136,276 - 86,185,369 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1086,136,236 - 86,185,370 (+)EnsemblGRCm39 Ensembl
GRCm381086,300,412 - 86,349,505 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1086,300,372 - 86,349,506 (+)EnsemblGRCm38mm10GRCm38
MGSCv371085,763,157 - 85,812,250 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361085,730,336 - 85,779,305 (+)NCBIMGSCv36mm8
Celera1088,278,411 - 88,327,541 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1042.83NCBI
Timp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,613,966 - 41,655,813 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,613,976 - 41,655,813 (+)NCBIChiLan1.0ChiLan1.0
TIMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22342,741,534 - 42,803,142 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12245,441,873 - 45,503,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02213,811,297 - 13,872,799 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12231,662,567 - 31,721,500 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2231,662,562 - 31,723,964 (+)Ensemblpanpan1.1panPan2
TIMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11030,627,154 - 30,681,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1030,627,154 - 30,694,288 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1030,610,166 - 30,664,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01031,469,330 - 31,523,514 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1031,465,801 - 31,536,528 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11031,209,878 - 31,264,020 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01031,499,587 - 31,553,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01031,684,823 - 31,738,972 (-)NCBIUU_Cfam_GSD_1.0
Timp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494513,986,214 - 14,035,739 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364926,996,613 - 7,046,190 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364926,996,627 - 7,046,137 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl512,185,818 - 12,242,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1512,185,816 - 12,242,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2511,962,119 - 12,019,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11915,621,609 - 15,684,118 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1915,622,431 - 15,680,449 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045110,320,510 - 110,382,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247501,775,744 - 1,817,385 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247501,776,197 - 1,817,279 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Timp3
304 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:66
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000005746
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat

1 to 10 of 21 rows
RH128273  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,523,310 - 17,523,527 (+)MAPPERmRatBN7.2
Rnor_6.0723,545,609 - 23,545,825NCBIRnor6.0
Rnor_5.0723,695,848 - 23,696,064UniSTSRnor5.0
RGSC_v3.4719,678,548 - 19,678,764UniSTSRGSC3.4
Celera714,762,644 - 14,762,860UniSTS
Cytogenetic Map7q13UniSTS
RH129267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,523,345 - 17,523,536 (+)MAPPERmRatBN7.2
Rnor_6.0723,545,644 - 23,545,834NCBIRnor6.0
Rnor_5.0723,695,883 - 23,696,073UniSTSRnor5.0
RGSC_v3.4719,678,583 - 19,678,773UniSTSRGSC3.4
Celera714,762,679 - 14,762,869UniSTS
Cytogenetic Map7q13UniSTS
RH94615  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,524,335 - 17,524,409 (+)MAPPERmRatBN7.2
Rnor_6.0723,546,634 - 23,546,707NCBIRnor6.0
Rnor_5.0723,696,873 - 23,696,946UniSTSRnor5.0
RGSC_v3.4719,679,573 - 19,679,646UniSTSRGSC3.4
Celera714,763,669 - 14,763,742UniSTS
Cytogenetic Map7q13UniSTS
RH144261  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,551,976 - 17,552,083 (+)MAPPERmRatBN7.2
Rnor_6.0723,574,271 - 23,574,377NCBIRnor6.0
Rnor_5.0723,724,510 - 23,724,616UniSTSRnor5.0
RGSC_v3.4719,707,210 - 19,707,316UniSTSRGSC3.4
Celera714,791,244 - 14,791,350UniSTS
Cytogenetic Map7q13UniSTS
BI278238  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,523,117 - 17,523,220 (+)MAPPERmRatBN7.2
Rnor_6.0723,545,416 - 23,545,518NCBIRnor6.0
Rnor_5.0723,695,655 - 23,695,757UniSTSRnor5.0
RGSC_v3.4719,678,355 - 19,678,457UniSTSRGSC3.4
Celera714,762,451 - 14,762,553UniSTS
Cytogenetic Map7q13UniSTS
RH135110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,522,418 - 17,522,611 (+)MAPPERmRatBN7.2
Rnor_6.0723,544,717 - 23,544,909NCBIRnor6.0
Rnor_5.0723,694,956 - 23,695,148UniSTSRnor5.0
RGSC_v3.4719,677,656 - 19,677,848UniSTSRGSC3.4
Celera714,761,752 - 14,761,944UniSTS
Cytogenetic Map7q13UniSTS
Timp3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,523,945 - 17,524,436 (+)MAPPERmRatBN7.2
Rnor_6.0723,546,244 - 23,546,734NCBIRnor6.0
Rnor_5.0723,696,483 - 23,696,973UniSTSRnor5.0
RGSC_v3.4719,679,183 - 19,679,673UniSTSRGSC3.4
Celera714,763,279 - 14,763,769UniSTS
Cytogenetic Map7q13UniSTS
G45201  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2717,562,016 - 17,562,389 (+)MAPPERmRatBN7.2
mRatBN7.2717,562,046 - 17,562,389 (+)MAPPERmRatBN7.2
Rnor_6.0723,584,341 - 23,584,683NCBIRnor6.0
Rnor_6.0723,584,311 - 23,584,683NCBIRnor6.0
Rnor_5.0723,734,580 - 23,734,922UniSTSRnor5.0
Rnor_5.0723,734,550 - 23,734,922UniSTSRnor5.0
RGSC_v3.4719,717,250 - 19,717,622UniSTSRGSC3.4
RGSC_v3.4719,717,280 - 19,717,622UniSTSRGSC3.4
Celera714,801,206 - 14,801,548UniSTS
Celera714,801,176 - 14,801,548UniSTS
Cytogenetic Map7q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000005746   ⟹   ENSRNOP00000005746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl717,521,919 - 17,571,839 (-)Ensembl
Rnor_6.0 Ensembl723,544,215 - 23,594,133 (-)Ensembl
RefSeq Acc Id: NM_012886   ⟹   NP_037018
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8719,408,539 - 19,459,558 (-)NCBI
mRatBN7.2717,520,827 - 17,571,850 (-)NCBI
Rnor_6.0723,544,205 - 23,594,133 (-)NCBI
Rnor_5.0723,693,364 - 23,744,404 (-)NCBI
RGSC_v3.4719,677,144 - 19,727,072 (-)RGD
Celera714,761,240 - 14,810,915 (-)RGD
Sequence:
Protein RefSeqs NP_037018 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA75002 (Get FASTA)   NCBI Sequence Viewer  
  AAH97335 (Get FASTA)   NCBI Sequence Viewer  
  EDM17125 (Get FASTA)   NCBI Sequence Viewer  
  EDM17126 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005746
GenBank Protein P48032 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037018   ⟸   NM_012886
- Peptide Label: precursor
- UniProtKB: P48032 (UniProtKB/Swiss-Prot),   Q4V8L0 (UniProtKB/TrEMBL),   F7FFD0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005746   ⟸   ENSRNOT00000005746
NTR

Name Modeler Protein Id AA Range Protein Structure
AF-P48032-F1-model_v2 AlphaFold P48032 1-211 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695091
Promoter ID:EPDNEW_R5616
Type:multiple initiation site
Name:Timp3_1
Description:TIMP metallopeptidase inhibitor 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0723,594,144 - 23,594,204EPDNEW


1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-34643 BioCyc
Ensembl Genes ENSRNOG00000004303 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000005746 ENTREZGENE
Gene3D-CATH 2.40.50.120 UniProtKB/Swiss-Prot
  3.90.370.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7443686 IMAGE-MGC_LOAD
InterPro Netrin_domain UniProtKB/Swiss-Prot
  TIMP UniProtKB/Swiss-Prot
  TIMP-like_OB-fold UniProtKB/Swiss-Prot
  TIMP_C UniProtKB/Swiss-Prot
  TIMP_CS UniProtKB/Swiss-Prot
MGC_CLONE MGC:114345 IMAGE-MGC_LOAD
NCBI Gene 25358 ENTREZGENE
PANTHER PTHR11844 UniProtKB/Swiss-Prot
  PTHR11844:SF22 UniProtKB/Swiss-Prot
Pfam TIMP UniProtKB/Swiss-Prot
PhenoGen Timp3 PhenoGen
PROSITE NTR UniProtKB/Swiss-Prot
  TIMP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004303 RatGTEx
SMART NTR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50242 UniProtKB/Swiss-Prot
TIGR TC204185
UniProt F7FFD0 ENTREZGENE, UniProtKB/TrEMBL
  P48032 ENTREZGENE
  Q4V8L0 ENTREZGENE, UniProtKB/TrEMBL
  TIMP3_RAT UniProtKB/Swiss-Prot
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-23 Timp3  TIMP metallopeptidase inhibitor 3  Timp3  tissue inhibitor of metalloproteinase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Timp3  tissue inhibitor of metalloproteinase 3  Timp3  tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Timp3  tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory)    tissue inhibitor of metalloproteinase 3  Name updated 1299863 APPROVED
2002-06-10 Timp3  Tissue inhibitor of metalloproteinase 3      Symbol and Name status set to approved 70586 APPROVED