Advanced Search (OLGA)

Gene: Nup214 (nucleoporin 214) Rattus norvegicus

Analyze

Symbol:

Nup214

Name:

nucleoporin 214

RGD ID:

1304977

Description:

Enables nuclear localization sequence binding activity. Predicted to be involved in RNA export from nucleus; protein import into nucleus; and regulation of nucleocytoplasmic transport. Predicted to act upstream of or within mRNA export from nucleus; protein export from nucleus; and regulation of cell cycle. Located in nuclear envelope. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; acute myeloid leukemia; and brain disease. Orthologous to human NUP214 (nucleoporin 214); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; mRNA nuclear export pathway; NXF1-NXT1 export pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; diethylstilbestrol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC296634; nuclear pore complex protein Nup214; nucleoporin 214kDa; RGD1304977; similar to mKIAA0023 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUP214 (nucleoporin 214)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Nup214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nup214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUP214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUP214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nup214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUP214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUP214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nup214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nup214 (nucleoporin 214)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NUP214 (nucleoporin 214)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NUP214 (nucleoporin 214)	Alliance	DIOPT (HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Mus musculus (house mouse):	Nup214 (nucleoporin 214)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nup214 (nucleoporin 214)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	nup214 (nucleoporin 214)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nup214 (nucleoporin 214)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	npp-14	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	npp-14	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Nup214	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nup214	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	nup214	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	nup214	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,652,841 - 35,738,323 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,652,858 - 35,739,192 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,255,111 - 15,340,568 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,255,119 - 15,340,568 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,328,071 - 18,410,174 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	26,913,061 - 26,995,162 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,160,272 - 25,245,882 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	10,993,584 - 11,070,638 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	3	9,227,869 - 9,236,878 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,227,823 - 9,236,736 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	10,999,186 - 11,070,640 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	14,588,337 - 14,597,175 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	3	16,351,780 - 16,423,232 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	11,079,165 - 11,165,173 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	10,002,669 - 10,087,697 (+)	NCBI		Celera
RGSC_v3.1	3	10,975,349 - 11,062,057 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

acute myeloid leukemia (ISO)

brain disease (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, 9 (ISO)

Facies (ISO)

Growth Disorders (ISO)

microcephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cannabidiol (ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dicrotophos (ISO)

diethylstilbestrol (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

fenvalerate (EXP)

flavonoids (ISO)

FR900359 (ISO)

gardiquimod (ISO)

glyphosate (ISO)

inulin (ISO)

ivermectin (ISO)

ketoconazole (EXP)

lycopene (ISO)

methoxychlor (EXP)

nickel atom (EXP,ISO)

nickel sulfate (EXP)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

protein kinase inhibitor (ISO)

quercetin (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA export from nucleus (IEA,ISO)

protein export from nucleus (ISO)

protein import into nucleus (IBA,ISO)

regulation of cell cycle (ISO)

regulation of nucleocytoplasmic transport (IEA,ISO)

RNA export from nucleus (IBA)

Cellular Component

cytoplasmic side of nuclear pore (IEA,ISO)

nuclear envelope (IDA,IEA,ISO)

nuclear pore (IBA)

nucleus (IEA)

Molecular Function

nuclear export signal receptor activity (IEA,ISO)

nuclear localization sequence binding (IBA,IDA)

protein binding (IPI,ISO)

structural constituent of nuclear pore (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Bone morphogenetic proteins signaling pathway (ISO)

mRNA nuclear export pathway (ISO)

NXF1-NXT1 export pathway (ISO)

ribosome biogenesis pathway (ISO)

RNA transport pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Nup84, a novel nucleoporin that is associated with CAN/Nup214 on the cytoplasmic face of the nuclear pore complex.	Bastos R, etal., J Cell Biol 1997 Jun 2;137(5):989-1000.
2.	Sequential recruitment of NPC proteins to the nuclear periphery at the end of mitosis.	Bodoor K, etal., J Cell Sci. 1999 Jul;112 ( Pt 13):2253-64.
3.	Regulation of mRNA trafficking by nuclear pore complexes.	Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Postage for the messenger: designating routes for nuclear mRNA export.	Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9.	Identification of a protein complex that is required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins.	Radu A, etal., Proc Natl Acad Sci U S A 1995 Feb 28;92(5):1769-73.
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Nuclear export and cytoplasmic maturation of ribosomal subunits.	Zemp I and Kutay U, FEBS Lett. 2007 Jun 19;581(15):2783-93. Epub 2007 May 11.

Additional References at PubMed

PMID:8108440	PMID:8896451	PMID:10358091	PMID:10557333	PMID:11000203	PMID:12191473

Genomics

Comparative Map Data

Nup214
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	35,652,841 - 35,738,323 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	35,652,858 - 35,739,192 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,255,111 - 15,340,568 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,255,119 - 15,340,568 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,328,071 - 18,410,174 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	26,913,061 - 26,995,162 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,160,272 - 25,245,882 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	10,993,584 - 11,070,638 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	3	9,227,869 - 9,236,878 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,227,823 - 9,236,736 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	3	10,999,186 - 11,070,640 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	14,588,337 - 14,597,175 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	3	16,351,780 - 16,423,232 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	11,079,165 - 11,165,173 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	10,002,669 - 10,087,697 (+)	NCBI		Celera
RGSC_v3.1	3	10,975,349 - 11,062,057 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

NUP214
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	131,125,586 - 131,234,663 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	131,124,868 - 131,234,667 (+)	Ensembl			hg38	GRCh38
GRCh37	9	134,000,973 - 134,110,050 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	132,990,802 - 133,098,912 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	131,030,534 - 131,138,644	NCBI
Celera	9	104,540,049 - 104,648,175 (+)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	103,491,679 - 103,601,026 (+)	NCBI		HuRef
CHM1_1	9	134,150,562 - 134,259,670 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	143,333,818 - 143,442,978 (+)	NCBI		T2T-CHM13v2.0

Nup214
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	31,864,446 - 31,943,204 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	31,864,448 - 31,943,987 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	31,974,408 - 32,053,975 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	31,974,436 - 32,053,975 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	31,829,970 - 31,909,495 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	31,796,448 - 31,875,984 (+)	NCBI		MGSCv36	mm8
Celera	2	31,677,520 - 31,757,311 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.97	NCBI

Nup214
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955513	955,639 - 1,038,912 (+)	NCBI	ChiLan1.0	ChiLan1.0

NUP214
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	8,117,336 - 8,227,218 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	8,119,678 - 8,229,571 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	102,246,575 - 102,355,291 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	130,893,110 - 131,001,305 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	130,893,110 - 131,001,305 (+)	Ensembl			panPan2	panpan1.1

NUP214
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	52,840,300 - 52,943,785 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	52,841,096 - 52,947,770 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	52,105,504 - 52,144,484 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	53,741,391 - 53,844,849 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	53,741,391 - 53,844,989 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	52,518,914 - 52,622,350 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	52,839,417 - 52,942,849 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	52,932,424 - 53,035,905 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nup214
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	198,212,850 - 198,299,295 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	17,981,304 - 18,067,854 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	17,981,402 - 18,067,828 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUP214
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	271,104,033 - 271,210,288 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	271,103,838 - 271,210,292 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	305,130,794 - 305,237,538 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUP214
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	6,905,047 - 7,014,907 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	6,903,096 - 7,014,887 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	8,486,610 - 8,597,948 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nup214
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	4,655,247 - 4,739,298 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	4,655,347 - 4,738,811 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nup214
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	3,581,444 - 3,666,070 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nup214
632 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	155
Count of miRNA genes:	112
Interacting mature miRNAs:	128
Transcripts:	ENSRNOT00000037164, ENSRNOT00000072628
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

D3Rat124

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	35,735,686 - 35,735,886 (+)	Marker Load Pipeline
mRatBN7.2	3	15,337,931 - 15,338,131 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,068,002 - 11,068,201	NCBI	Rnor6.0
Rnor_5.0	3	16,420,596 - 16,420,795	UniSTS	Rnor5.0
RGSC_v3.4	3	11,162,536 - 11,162,736	RGD	RGSC3.4
RGSC_v3.4	3	11,162,537 - 11,162,736	UniSTS	RGSC3.4
Celera	3	10,085,061 - 10,085,260	UniSTS
RGSC_v3.1	3	11,058,909 - 11,059,108	RGD
RH 3.4 Map	3	63.0	RGD
RH 3.4 Map	3	63.0	UniSTS
RH 2.0 Map	3	0.0	RGD
SHRSP x BN Map	3	3.4899	RGD
FHH x ACI Map	3	4.78	RGD
Cytogenetic Map	3	p11	UniSTS

AI013738

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,253,581 - 15,253,676 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,238,301 - 9,238,395	NCBI	Rnor6.0
Rnor_5.0	3	14,598,618 - 14,598,712	UniSTS	Rnor5.0
RGSC_v3.4	3	11,077,628 - 11,077,722	UniSTS	RGSC3.4
Celera	3	10,001,132 - 10,001,226	UniSTS
RH 3.4 Map	3	59.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

BF386249

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,261,188 - 15,261,354 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,230,624 - 9,230,789	NCBI	Rnor6.0
Rnor_5.0	3	14,590,941 - 14,591,106	UniSTS	Rnor5.0
RGSC_v3.4	3	11,085,234 - 11,085,399	UniSTS	RGSC3.4
Celera	3	10,008,738 - 10,008,903	UniSTS
RH 3.4 Map	3	59.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

BE115511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,320,600 - 15,320,813 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,050,671 - 11,050,883	NCBI	Rnor6.0
Rnor_5.0	3	16,403,265 - 16,403,477	UniSTS	Rnor5.0
RGSC_v3.4	3	11,145,206 - 11,145,418	UniSTS	RGSC3.4
Celera	3	10,067,730 - 10,067,942	UniSTS
RH 3.4 Map	3	62.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

AU046699

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,293,652 - 15,293,845 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,023,724 - 11,023,916	NCBI	Rnor6.0
Rnor_5.0	3	16,376,318 - 16,376,510	UniSTS	Rnor5.0
RGSC_v3.4	3	11,118,259 - 11,118,451	UniSTS	RGSC3.4
Celera	3	10,040,780 - 10,040,972	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
24	22	108	268	176	174	112	117	112	12	556	280	11	227	124	145	62	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001168559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037164 ⟹ ENSRNOP00000033579

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,652,858 - 35,738,321 (+)	Ensembl
mRatBN7.2 Ensembl	3	15,255,119 - 15,340,568 (+)	Ensembl
Rnor_6.0 Ensembl	3	10,999,186 - 11,070,636 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072628 ⟹ ENSRNOP00000067057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,256,213 - 15,264,103 (+)	Ensembl
Rnor_6.0 Ensembl	3	9,227,823 - 9,236,736 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	11,011,768 - 11,013,901 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	11,070,066 - 11,070,640 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162409 ⟹ ENSRNOP00000099689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	35,652,858 - 35,739,192 (+)	Ensembl

RefSeq Acc Id:

NM_001168559 ⟹ NP_001162031

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,652,879 - 35,738,323 (+)	NCBI
mRatBN7.2	3	15,255,119 - 15,340,568 (+)	NCBI
Rnor_6.0	3	10,993,584 - 11,070,638 (+)	NCBI
Rnor_5.0	3	14,588,337 - 14,597,175 (-)	NCBI
Rnor_5.0	3	16,351,780 - 16,423,232 (+)	NCBI
RGSC_v3.4	3	11,079,165 - 11,165,173 (+)	RGD
Celera	3	10,002,669 - 10,087,697 (+)	RGD

Sequence:

show sequence

CGCGCGCCCCTGGCGCTGAAGGAAGGAAGTTGAGGCCTGAGCGGCCTGGGCTGTGTTTGAAAGG
CCGCGGACGCTAGCGGCAGCGGCAGCAGCAGCTACTTGGACATCCTGAAGGCGGCCCGATGGGA
GACGAGATGGATGCCATGATCCCTGAGCGGGAGATGAAGGACTTTCAGTTTAGAGCTCTGAAGA
AAGTGAGAATCTTTGACTCTCCTGAGGAGTTGCCCAAGGAGCGCTCGAGTGTGCTCACCGTATC
CAATAAGTATGGCATGCTCTTTGCTGGTGGCACCAATGGCTTGAATGTCTTTCCTACTAAAAGC
CTTCTTATCCAAAACAAACCTGGAGATGATCCCAATAAAATTGTTGACACAATCCAAGGCTTGA
ATGTCCCTATGAAATTCCCAGTTCATCACCTGGCACTGAGCTGTGATAACCTTACACTCTCTGC
GTGCATGATGTCCAGTGAATATGGCTCCATTATAGCCTTTTTTGATGTTCGCACATTTTCAAAT
CAGGCTAAACCACTGAAACGCCCATTTACCTATCACAAGCTTTCAAACGGTGCCAGCGGGATGG
TGAATGATATGAAGTGGAACCCCACTGTCCCTTCCATGGCAGCAGTTTGTCTGGCTGATGGCAG
CATTTCTGTCTTGCAAGTTACGGATGTGGTGAAAGTGTGCGCCACACTTCCTCCTTCATCGGGA
GTCACGTGTGTATGCTGGAGCCCCAAAGGAAAGCAGCTGGCCGTGGGAAAGCAGAATGGAACTG
TGGTCCAGTATCTTCCTACATTGCAGGAAAAAAAGGTCATTCCATGTCCTCCGTTTTATGAGGC
AGACCACCCTGTCAGAGTTCTGGATGTGCTGTGGATTGGTACATACGTCTTCACGATAGTCTAT
GCTGGTGCGGATGGCGCACTGGAGACCTGTCCAGATGTGGTGATGGCTCTGCTTCCGAAAAAAG
AAGAAAAGCACCCAGAAATATTTGTGAACTTCATGGAGCCCTGCTACAGCAGCTGCACAGAGAG
ACAACATCATTACTACCTCAGCTACATCGAGGAGTGGGATTTAGTGCTGGCAGCATCTGCAGCG
TCAACAGAAGTTAGCATCCTTGCTCGACAAAGTGATCAGACTAATTGGGAATCTTGGGTACTGG
AAGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGCGATGACTCCTTGCCCGTGGGTGT
TGCCATAGATTACACCAATGAAGTAGAAGTTGCCATCAATGAAGAAAAGACTCTTCCTCCTGCT
CCGGTTCTCCTGTTACTTTCAACAGATGGTGTACTTTGTCCATTTTATATGATCAATCAAAATC
CCGGGGTTAGGTCCCTAATCAAGACCTTAGAGCTGATCTCAGCAGAGGGAGAGCGCCAGCCTAA
GTCCTCAGGAAGTTTTCCTAGTACACCACCTTCCCCTCAAGCTCCACAGAACCTTGACGCTCCA
GCAACAGCCTCTTCGCCTCTTCCACCGGTGTCTGCTGCTCCCACCGCCACCTTCCCTTTGCCGT
CTGCTGGAGGAGGCCCTTCTGTGTTCTCCTTTGGCCCTTCACCCTTCAAGTCCTCCTCCATCCC
CGGGGAGCCCCCGCCATACCCCACTGGCTCTGACAGTTCCAGAGCAGCACCAGCCTCTGGCACC
CCCACCTTCTCTTTTGCGCCTCCTTCCAAAGGCACCTTGGCCCCGACCCCTGCAGTGGCTCCTG
TGCCCACATCTGCTGCTCCCTTCACTTTCGGATCATCAGGTTTTAAGCCCCCCTTGGAAAGCAC
ACCTATGTCCAGTGCCCCAAACACAGGGATGAAGCCTTCATTCCCACCCTCAACTTCTTCGGTG
AAAGTCAACCTGAACGAGAAGTTCACCGCTGTGGCCTCCTCTGCACCCGTTCATAGCTCCACAA
GCATACCCTCCGTGTTGCCGTTCTCTTCCTCCCCCAAGCCACCAGCTTCTGGACCACTCAGCCA
TCCCACGCCTCTCCCAGCATCACCCAGCTCCATGCCTTTGAAACCTTCAGTCTCTCCCTCTCCG
TCAGTTGGCCGCTCCGCCCAGACTGCCCCGAGTTCAGCACCCTCCACAGGGCAGAAATCTCCTA
GGGTAAATCCTCCAGTGCCAAAGTCAGGGTCCTCTCAGGCCAGAGCACTTCAGCCTCCTGTTAC
AGAGAAGCAGAGGCATCAGTGGAAAGAGTCAGACCCTGTGATGGCTGGAATTGGAGAGGAGATT
GCACACTTCCAGAAAGAGCTGGAGGAGTTAAAGGCGCGAACCTCCAAAGCCTGTTTCCAGGTCG
GCACCCCTGAGGAGATGAAGATGCTGCGCACAGAGTCAGACGACCTGCACACCTTCCTCTTTGA
GATCAGAGAGGCCACAGAGTCTCTTCATGGAGACATAAGTACACTGAAAACAACTCTGCTGGAG
GGCTTTGCTGGTGTTGAAGAAGCCAGAGAACAGCATGGAAGAAATCATGACTCTGGGTATCTCC
ATCTGCTTTATAAAAGACCACTGGATCCCAAGAGCGAGGCCCAGCTCCAGGAAATTCGCCGCCT
TCACCAGTATGTGAAATTTGCTGTCCAGGATGTGAATGATGTCCTAGACTTAGAGTGGGATCGG
CATCTGGAGCAGAAGAAAAGACAGAGGCGCCTAATTGTGCCAGAGAGAGAGACACTTTTCAACA
CACTAGCCAACAACCGGGAAATCATCAACCAGCAGAGGAAGAGGTTGAATCACCTGGTGGACAG
TCTGCAGCAGCTCCGTCTCTATAACCAGACGTCCCCATGGAACCGGCCCTCAACGCTTTCAACG
CAAAGTGACACTCCTAGTTTTGACAGTGACCTTGAACACCTGCTAAAGACTACCATTGAATCTC
ACACCAAGCCTTCTCCTAGAGTGCCAGGTAAACTGTCCCCTGCGAAACAGGCCCAACTGAGGAA
CTTCTTGGCCAAAAGGAAGACCCCACCAGTGAGGTCTACTGCTCCAGCCAGCCTGTCTCGGTCA
GCCTTCCTGTCTCAGAGGTACTATGAAGACTTAGATGAAGGCAGCTCCGCGTCGTCCGTAGCTC
ACCCTCTGGAGGGAGAAGATGCCCGGCCGACGCCGACCTGCAGAGAGGAGGAGGCTGTGGTCCC
AGTCCCTCGGCATGCCCCCGTGGTCCGCACACCTTCTGTCCAACCCAGTCTCCTGCCTCAGGCG
ATGCCTTTTGCAAAGCCTCACCTGATTCATAGTTCTTCACCTGCTGCGATGAGCTCTTCAATCT
CTACGTCAGCTACCAAAGTTATTCCTCAAGGAGCCGACACCACAATGCTGGCAACTAAAACGGT
AAAGCATGGTGCACCAGGTCCTTCCCACACTGTCGCAGCTCCCCAGGCAGCGGCTGCTGCAGCC
CTGAGACGGCAGATGGCCAGTCAGGCGCCAGCTGTGAGCACTCTGACCGAATCCACTTTGAAGA
ATGTCCCTCAAGTGGTGAATGTACAGGAACTGAAGAGTAACCCCTCACCCCCTTCTGCGGCCAT
GGGTTCTTCTGGGCCGCACTCAGCAGCCAAAGCCCCCCATGCAGTGTTAACCCCAGTGGCTGCC
AGCCAAGCCAAGCAGGGGTCTCTGATAAATTCCTTCAAGCCGTCAGGACCCACACCAGTGTCCT
GTCAGCTGTCCTCTGGGGATAAAGCTGTAGGTCCAGGGACGGCCAAGACAGAGTCACCTGTGAC
CTCCACCCCATCTACGGGGCAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGGGACCTTTACT
TTTGGGACAATCACACCAGCCCCATCTTCTAGTTTCACTGCCACACCAGGGGCAGCACCCCCCA
CTAAAGAGTCAAACCAGCTTGAGGCGTTCTCATTTGGCGGGGGAGGCAAACCTTTTTGTGAGAC
CATTCCTGGAAACCCCCCTGCCACGGGACCCCCATCAGCACCCAGCACTTCTGTAACAACTACG
TCTCTGGAAGACTCTGCTCCAACCAGCAGCAAACCTGCAACTCCTGAAACTCCTGTGTCCACTG
CCTCTAGCAAATTGGAAACTCCACCATCCAAGTTAGGAGAGCTTCTCTTCCCAAGTTCTCTAGC
TGGAGAGACGCTAGGGAGCTTCTCAGGACTGCGTGTTGGCCAGGCTGAGGAGTCTACAAAGCCC
GTTAGTAAGGCCTCCTCCACAAACCTGGCCGGAGCCCAGCCAGCCAAGCCCTCAGGGTTTAGCT
TTCCTGCTGCTTCCGTGTTAGGGAAGCCAGTGGAGCCCAGTGTGACGTCCTCTGCCCCAGCGGC
ACCAGTCTCAGCTCTGAGTGCGAGCACTAGCAGTTCCTCGGCAACTGTCTTTGGCAGTGTGCCC
CTTACCAGTGCTGCACCTTCCGGGCTCATGAGTTTTAGTGGGGCCTCTTTGGCTAGTAGCAAAG
CTAGTTTCTCATTTGGAAACCAACAGACTAGTAGTGCAGCAGCAGCAGCAGCTACCCCAGCATC
CACCTCAGTTGCCCCTTCCCTTCCAGCATCTTTCCCTACTTTGTCATTTGGTGGCCTCCTGAGT
TCACCATCAGCTTCTTCCCTGCCTGTGTCTTCTGGTAAGATCACAGAGGAGGCCACACCACCAG
CTGTGCCTGACAAGTCAGACCACAGTGAAGTGTCAGCATCAACACCCTCACTTCCACTACAGCC
ACCGTCAGCCCAGCTTCCCCAGGCATCTCTGCAAACTTCTGACCCTGTCAAAAAAGAACCTGTT
CCTGCGCAGACCACAGACAGCAGACCATCATCTTCTGCCAGCCTTGTGGCATCCACAGAATCCA
CTCCAGTCGCCCCAGGGGGCCCTGATAGCAAGACAGAAGCAGTGTCCCCTGCTTCCACCTTTGC
AGGGCCTGGGCCGGCCGTGGTTGCAGCTGTTCTCCTAGGAGCAGGCTCGGCAGCCAGTGAAGCT
TCCGGTACCCCTAGTACCTCCAGCACTGTCTCCAGCAGTACCCCAACTCCTGCCACAGAGACAG
CTGTATTTGGGACTGCCACTTCTGGCTCCTCAGTCTTTACACAGCCGCCTGCTGCCAGTTCGAG
CTCAGCATTCAACCAGCTCTCCAGTAACACGGCCACTGCACCCTCCGCCACCCCCGTGTTTGGG
CAAGTGGCAGCCAGCATAGCCAGCACAGCCGCTGCCACGCCACAGGCCAGCAGTTCAGGATTTG
GCAGCCCTGCGTTTGGTGCTTCGGCTCCTGGAGTGTTCGGACAGACAGCATTTGGGCAGTCCCC
AGCCTTTGGGCAAGCAACAAGCAGCCCTGCGAGTGGCTTCTCCTTCAGCCAACCTGGGTTCAGC
TCTGTCCCTGCTTTTGGCCAGTCTGTCTCCTCCACCCCCACATCCACCAGTGCCAATGTCTTCG
GAGCCACCTCAAGTACCAGCAGCCCTGGTTCCTTCTCATTTGGACAGGCTTCTACCAATACAGG
AGGGACGCTATTTGGCCAAAACAACCCTCCTGCTTTTGGTCAGAGCCCGGGCTTTGGGCAGGGA
GGCTCTGTGTTTGGTAGCACCTCGGCCACTACCTCTACAGCAGCACCTTCAGGGTTTAGCTTTT
GTCAAGCCTCCGGTTTTGGGTCTAGTAATACTGGTTCTGTGTTTGGTCAGGCAGCCAGTAGCGG
TGGGTCAGTCTTTGGCCAGTCATCCACTTCCAGTGGCAGCGTGTTTGGGTCTGGAAATGCTACA
AGAGGGGGCGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGCCAGGATGCTGCCAACAAAAACC
CATTCAGCTCGGCCAGTGGGGGCTTTGGGTCTACGCCTACACCCAATACCTCTAACCTGTTCGG
GAACAGCGGAGCTAAGACCTTCGGAGGGTTCGGCTCCTCCTTCGGGGAGCAGAAGCCTGCTGGC
ACATTCAGCTCTGGTGGTGGGAGCGTGGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAA
CAGGTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTT
TGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGC
AAAGTGTTCGGAGAGGGTACTGCGGCCGCCAGCGCAGGAGGATTCGGGTTCGGGAGTAGCAGCA
ACACTGCATCCTTCGGTACCCTCGCCAGTCAGAACGCACCCACTTTCGGATCCTTGTCCCAGCA
GACCTCTGGCTTCGGGACCCCGAGCAGTGGATTCTCTGGGTTTGGATCAGGCACAGGAGCATTC
ACCTTCGGATCATCTAACTCGTCTGTCCAGGGCTTCGGTGGCTGGAGAAGCTGAGCCGACGTCA
GCCTTCCCTGAGGCTGCTGTGAGCTCCTGTAGGCAGCCCTCCACTCTCCAGGCGCCCACAGGAA
CAGACTCTCAGAAGAACTCTCATGAAGATGCTCCGCCAGGAAGAAGCATTGGAGACCAAAGCTC
AGCAGTGCTTGACTGCCTCTTCCCCACCTTCAGATTTTGCATCAAGTTTTCCTCTGCTATTAAA
GTGTTTGGGCTGGTTCTGCACAGAA

hide sequence

RefSeq Acc Id:

XM_039104750 ⟹ XP_038960678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,652,841 - 35,738,323 (+)	NCBI
mRatBN7.2	3	15,255,111 - 15,340,568 (+)	NCBI

RefSeq Acc Id:

XM_039104751 ⟹ XP_038960679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,652,841 - 35,738,323 (+)	NCBI
mRatBN7.2	3	15,255,111 - 15,340,568 (+)	NCBI

RefSeq Acc Id:

XM_039104752 ⟹ XP_038960680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	35,652,841 - 35,738,323 (+)	NCBI
mRatBN7.2	3	15,255,111 - 15,340,568 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001162031	(Get FASTA)	NCBI Sequence Viewer
	XP_038960678	(Get FASTA)	NCBI Sequence Viewer
	XP_038960679	(Get FASTA)	NCBI Sequence Viewer
	XP_038960680	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93258	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033579
	ENSRNOP00000033579.7
	ENSRNOP00000099689.1

RefSeq Acc Id:

NP_001162031 ⟸ NM_001168559

- UniProtKB:

A6JU39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGDEMDAMIPEREMKDFQFRALKKVRIFDSPEELPKERSSVLTVSNKYGMLFAGGTNGLNVFPT
KSLLIQNKPGDDPNKIVDTIQGLNVPMKFPVHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF
SNQAKPLKRPFTYHKLSNGASGMVNDMKWNPTVPSMAAVCLADGSISVLQVTDVVKVCATLPPS
SGVTCVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYEADHPVRVLDVLWIGTYVFTI
VYAGADGALETCPDVVMALLPKKEEKHPEIFVNFMEPCYSSCTERQHHYYLSYIEEWDLVLAAS
AASTEVSILARQSDQTNWESWVLEDSSRAELPVTDKSDDSLPVGVAIDYTNEVEVAINEEKTLP
PAPVLLLLSTDGVLCPFYMINQNPGVRSLIKTLELISAEGERQPKSSGSFPSTPPSPQAPQNLD
APATASSPLPPVSAAPTATFPLPSAGGGPSVFSFGPSPFKSSSIPGEPPPYPTGSDSSRAAPAS
GTPTFSFAPPSKGTLAPTPAVAPVPTSAAPFTFGSSGFKPPLESTPMSSAPNTGMKPSFPPSTS
SVKVNLNEKFTAVASSAPVHSSTSIPSVLPFSSSPKPPASGPLSHPTPLPASPSSMPLKPSVSP
SPSVGRSAQTAPSSAPSTGQKSPRVNPPVPKSGSSQARALQPPVTEKQRHQWKESDPVMAGIGE
EIAHFQKELEELKARTSKACFQVGTPEEMKMLRTESDDLHTFLFEIREATESLHGDISTLKTTL
LEGFAGVEEAREQHGRNHDSGYLHLLYKRPLDPKSEAQLQEIRRLHQYVKFAVQDVNDVLDLEW
DRHLEQKKRQRRLIVPERETLFNTLANNREIINQQRKRLNHLVDSLQQLRLYNQTSPWNRPSTL
STQSDTPSFDSDLEHLLKTTIESHTKPSPRVPGKLSPAKQAQLRNFLAKRKTPPVRSTAPASLS
RSAFLSQRYYEDLDEGSSASSVAHPLEGEDARPTPTCREEEAVVPVPRHAPVVRTPSVQPSLLP
QAMPFAKPHLIHSSSPAAMSSSISTSATKVIPQGADTTMLATKTVKHGAPGPSHTVAAPQAAAA
AALRRQMASQAPAVSTLTESTLKNVPQVVNVQELKSNPSPPSAAMGSSGPHSAAKAPHAVLTPV
AASQAKQGSLINSFKPSGPTPVSCQLSSGDKAVGPGTAKTESPVTSTPSTGQLNKPFSFASPGT
FTFGTITPAPSSSFTATPGAAPPTKESNQLEAFSFGGGGKPFCETIPGNPPATGPPSAPSTSVT
TTSLEDSAPTSSKPATPETPVSTASSKLETPPSKLGELLFPSSLAGETLGSFSGLRVGQAEEST
KPVSKASSTNLAGAQPAKPSGFSFPAASVLGKPVEPSVTSSAPAAPVSALSASTSSSSATVFGS
VPLTSAAPSGLMSFSGASLASSKASFSFGNQQTSSAAAAAATPASTSVAPSLPASFPTLSFGGL
LSSPSASSLPVSSGKITEEATPPAVPDKSDHSEVSASTPSLPLQPPSAQLPQASLQTSDPVKKE
PVPAQTTDSRPSSSASLVASTESTPVAPGGPDSKTEAVSPASTFAGPGPAVVAAVLLGAGSAAS
EASGTPSTSSTVSSSTPTPATETAVFGTATSGSSVFTQPPAASSSSAFNQLSSNTATAPSATPV
FGQVAASIASTAAATPQASSSGFGSPAFGASAPGVFGQTAFGQSPAFGQATSSPASGFSFSQPG
FSSVPAFGQSVSSTPTSTSANVFGATSSTSSPGSFSFGQASTNTGGTLFGQNNPPAFGQSPGFG
QGGSVFGSTSATTSTAAPSGFSFCQASGFGSSNTGSVFGQAASSGGSVFGQSSTSSGSVFGSGN
ATRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTPTPNTSNLFGNSGAKTFGGFGSSFGEQKP
AGTFSSGGGSVASQGFGFSTPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGST
GGKVFGEGTAAASAGGFGFGSSSNTASFGTLASQNAPTFGSLSQQTSGFGTPSSGFSGFGSGTG
AFTFGSSNSSVQGFGGWRS

hide sequence

Ensembl Acc Id:

ENSRNOP00000067057 ⟸ ENSRNOT00000072628

Ensembl Acc Id:

ENSRNOP00000033579 ⟸ ENSRNOT00000037164

RefSeq Acc Id:	XP_038960678 ⟸ XM_039104750
- Peptide Label:	isoform X1
- UniProtKB:	A6JU39 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960679 ⟸ XM_039104751
- Peptide Label:	isoform X2
- UniProtKB:	A6JU39 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960680 ⟸ XM_039104752
- Peptide Label:	isoform X3
- UniProtKB:	D4ACK1 (UniProtKB/TrEMBL), A6JU39 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099689 ⟸ ENSRNOT00000162409

Protein Domains

Nuclear pore complex protein Nup214 phenylalanine- Nucleoporin Nup159/Nup146 N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RBV9-F1-model_v2	AlphaFold	M0RBV9	1-279	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304977	AgrOrtholog
BioCyc Gene	G2FUF-50165	BioCyc
Ensembl Genes	ENSRNOG00000023393	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000047244	Ensembl
Ensembl Transcript	ENSRNOT00000037164	ENTREZGENE
	ENSRNOT00000037164.9	UniProtKB/TrEMBL
	ENSRNOT00000162409.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	Nucleoporin	UniProtKB/TrEMBL
	Nup159/Nup146_N	UniProtKB/TrEMBL
	Nup214_FG	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
NCBI Gene	296634	ENTREZGENE
PANTHER	NUCLEAR PORE COMPLEX PROTEIN NUP214	UniProtKB/TrEMBL
	PTHR23193	UniProtKB/TrEMBL
Pfam	Beta-prop_NUP159_NUP214	UniProtKB/TrEMBL
	Nup214_FG	UniProtKB/TrEMBL
PhenoGen	Nup214	PhenoGen
RatGTEx	ENSRNOG00000023393	RatGTEx
	ENSRNOG00000047244	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	Nucleoporin domain	UniProtKB/TrEMBL
UniProt	A0ABK0L6T4_RAT	UniProtKB/TrEMBL
	A6JU39	ENTREZGENE, UniProtKB/TrEMBL
	D4ACK1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Nup214	nucleoporin 214	RGD1304977_predicted	similar to mKIAA0023 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1304977_predicted	similar to mKIAA0023 protein (predicted)	LOC296634_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296634_predicted	similar to mKIAA0023 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)