Nup214 (nucleoporin 214) - Rat Genome Database

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Gene: Nup214 (nucleoporin 214) Ictidomys tridecemlineatus
Analyze
Symbol: Nup214
Name: nucleoporin 214
RGD ID: 12499649
Description: ENCODES a protein that exhibits nuclear localization sequence binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); protein export from nucleus (ortholog); protein import into nucleus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; mRNA nuclear export pathway; NXF1-NXT1 export pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup214
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,981,304 - 18,067,854 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nup214
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,981,304 - 18,067,854 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP214
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,125,586 - 131,234,663 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,125,573 - 131,234,663 (+)EnsemblGRCh38hg38GRCh38
GRCh379134,000,973 - 134,110,050 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,990,802 - 133,098,912 (+)NCBINCBI36Build 36hg18NCBI36
Build 349131,030,534 - 131,138,644NCBI
Celera9104,540,049 - 104,648,175 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,491,679 - 103,601,026 (+)NCBIHuRef
CHM1_19134,150,562 - 134,259,670 (+)NCBICHM1_1
T2T-CHM13v2.09143,333,818 - 143,442,978 (+)NCBIT2T-CHM13v2.0
Nup214
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,864,446 - 31,943,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,864,448 - 31,943,987 (+)EnsemblGRCm39 Ensembl
GRCm38231,974,408 - 32,053,975 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,974,436 - 32,053,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37231,829,970 - 31,909,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,796,448 - 31,875,984 (+)NCBIMGSCv36mm8
Celera231,677,520 - 31,757,311 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.97NCBI
Nup214
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,652,841 - 35,738,323 (+)NCBIGRCr8
mRatBN7.2315,255,111 - 15,340,568 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,255,119 - 15,340,568 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,328,071 - 18,410,174 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,913,061 - 26,995,162 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,160,272 - 25,245,882 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.039,227,869 - 9,236,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0310,993,584 - 11,070,638 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl39,227,823 - 9,236,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,999,186 - 11,070,640 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,351,780 - 16,423,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0314,588,337 - 14,597,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,079,165 - 11,165,173 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1310,975,349 - 11,062,057 (+)NCBI
Celera310,002,669 - 10,087,697 (+)NCBICelera
Cytogenetic Map3p12NCBI
Nup214
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955513955,639 - 1,038,912 (+)NCBIChiLan1.0ChiLan1.0
NUP214
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,117,336 - 8,227,218 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,119,678 - 8,229,571 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,246,575 - 102,355,291 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,893,110 - 131,001,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,893,110 - 131,001,305 (+)Ensemblpanpan1.1panPan2
NUP214
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,840,300 - 52,943,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,841,096 - 52,947,770 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,105,504 - 52,144,484 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,741,391 - 53,844,849 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,741,391 - 53,844,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,518,914 - 52,622,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,839,417 - 52,942,849 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,932,424 - 53,035,905 (-)NCBIUU_Cfam_GSD_1.0
NUP214
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,104,033 - 271,210,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,103,838 - 271,210,292 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,130,794 - 305,237,538 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP214
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,905,047 - 7,014,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,903,096 - 7,014,887 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,486,610 - 8,597,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup214
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,655,247 - 4,739,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,655,347 - 4,738,811 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011647   ⟹   ENSSTOP00000010451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648717,981,304 - 18,067,854 (+)Ensembl
RefSeq Acc Id: XM_005321088   ⟹   XP_005321145
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,875 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356741   ⟹   XP_013212195
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,850 - 198,299,295 (+)NCBI
SpeTri2.0NW_00493648717,981,402 - 18,067,828 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286503   ⟹   XP_040142437
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,212,875 - 198,299,295 (+)NCBI
RefSeq Acc Id: XM_040286504   ⟹   XP_040142438
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947198,224,527 - 198,299,295 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005321145 (Get FASTA)   NCBI Sequence Viewer  
  XP_013212195 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142437 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142438 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010451.3
GenBank Protein KAG3288201 (Get FASTA)   NCBI Sequence Viewer  
  KAG3288202 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013212195   ⟸   XM_013356741
- Peptide Label: isoform X3
- UniProtKB: I3MHR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005321145   ⟸   XM_005321088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040142437   ⟸   XM_040286503
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040142438   ⟸   XM_040286504
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000010451   ⟸   ENSSTOT00000011647


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011636 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011647.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Nucleoporin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
NCBI Gene Nup214 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP214 UniProtKB/TrEMBL
  PTHR23193 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP Nucleoporin domain UniProtKB/TrEMBL
UniProt I3MHR1 ENTREZGENE, UniProtKB/TrEMBL