D4Rat206 Marker Search Result - Rat Genome Database

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Marker: D4Rat206

Symbol: D4Rat206
Previously known as: R0250-A07; oxsts10927; 
RGD ID: 40536
Expected Size: 167 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04177,886,107 - 177,886,288NCBIRnor6.0
RH 3.4 Map41056.9RGD
RH 3.4 Map41056.9UniSTS
SHRSP x BN Map496.5499UniSTS
SHRSP x BN Map496.5499RGD
FHH x ACI Map4112.37RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Alc23   Anxrr36   Anxrr37   Anxrr38   Anxrr44   Anxrr52   Anxrr53  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCAGGAAACAGTTTACTTCATGC
Reverse Primer AAGTAGTTGGCATGCGTGTG
 
Template 
TGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCACCAGAAGTAGTTGGCATGC
GTGTGCGTGCGTGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGATTTAAAAGGAAGGTTCTAGTCCAGGTTAGAGGTAATAAGAAATGTTAAAAAAAAAAAA
AGCATGAAGTAAACTGTTTCCTGCAGATCTTAACTTCTTGAACCACAGTAGGTGGGCATTTGCT
TAAGAAAATCTTAAAGAGACATGCTTACTTTCCATAGAATCTCTGAGACTTGTAGAGACCCCCC
CCCACCCACTCCTCACCCNCTTCTCCCTCTGGNTGGACTGAAGGTGCTGTCTTCCCATTCANTC
CCCACCACCCACCATTTGGGATGAGCCAAAACCCTCAGCAAAACCCTGATGTTTGCTTGAGCCA
CAAGTGATATGGGCAACGCACATTAGTAAAGACAATCCCTTCATTANAGTTAANNNNCAGGAGA
GGTCANGCTTTTATGCCTGAAGGAGAAAA

Region

Nucleotide Sequences
GenBank Nucleotide AU024953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100873072 UniSTS
  100873074 UniSTS
  100873075 UniSTS
  100873076 UniSTS
  100873082 UniSTS
  100873090 UniSTS
  100873091 UniSTS
UniSTS 121988 UniSTS