D13Rat48 Marker Search Result - Rat Genome Database

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Marker: D13Rat48

Symbol: D13Rat48
Previously known as: oxsts6155; R008-C03; R0008-C03; 
RGD ID: 35252
Expected Size: 148 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21399,119,919 - 99,120,067 (+)MAPPERmRatBN7.2
Rnor_6.013106,018,216 - 106,018,363NCBIRnor6.0
Rnor_5.013110,666,365 - 110,666,512UniSTSRnor5.0
RGSC_v3.413103,690,415 - 103,690,562UniSTSRGSC3.4
RGSC_v3.413103,690,248 - 103,690,559RGDRGSC3.4
RGSC_v3.113103,879,291 - 103,879,602RGD
Celera1398,617,506 - 98,617,653UniSTS
RH 3.4 Map13683.7RGD
RH 3.4 Map13683.7UniSTS
RH 2.0 Map13739.5RGD
FHH x ACI Map1357.7299RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCTGGGTGAAAAATAATGTGTTC
Reverse Primer TGCACACTGGGTGTGAATTT
 
Template 
AAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCTGGGTGAAAAATAATGTGTTCTCT
TTTATGTCATGAGAACAGTTCCTAAATAAAAATAGAAGTGTACACACACAAACACACACACACA
CACACACACTTACACAAATAGCAGCTTTAGTATTTATGAAATTCACACCCAGTGTGCAAATGTT
CGGCTTTATGCTTGGTGACTCTCACTTTGTAATTTGTGGGTTTGTTCTTCTTCTTATTCTGAAA
GCTACTGTGGTAGCTTGACTGAAGATTTGGTTCCTGGTCAGTGGCTGTTTAGAAGTAGAGCCTT
GTTGGTCTAGGCTTTGAAGTTTTATAGTCAGGGGGTACCGAGCTCGAATTCGTAATCATGGTCA
TAGCTGTTTCCTGTGTGAAATTGTTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGC
ATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCAC
TG

Region

Nucleotide Sequences
GenBank Nucleotide CH473985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat


Additional Information

Database Acc Id Source(s)
UniSTS 119441 UniSTS