DXMgh8 Marker Search Result - Rat Genome Database

General

Marker: DXMgh8

Symbol:

DXMgh8

Previously known as:

R1103-D07; D15Mgh8/R3285; DXR15Mgh8; oxsts9245;

RGD ID:

34148

Expected Size:

122 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	25,088,664 - 25,088,786 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	26,451,500 - 26,451,621	NCBI	Rnor6.0
Rnor_5.0	X	26,856,292 - 26,856,413	UniSTS	Rnor5.0
RGSC_v3.4	X	45,774,366 - 45,774,488	RGD	RGSC3.4
RGSC_v3.4	X	45,774,367 - 45,774,488	UniSTS	RGSC3.4
RGSC_v3.1	X	45,827,835 - 45,827,957	RGD
Celera	X	25,508,562 - 25,508,683	UniSTS
RH 2.0 Map	21	233.2	RGD
SHRSP x BN Map	X	6.8999	RGD
Cytogenetic Map	X		RGD

Is Marker For:

Strains: AVN/Orl BBDP/Rhw BBDR/Rhw BC/CpbU BDIX/Han BDVII/Cub BN/SsNHsd BP/Cub BUF/Pit DA/PitN DON/Melb F344/Pit FHH/Eur IS/Kyo LE/Mol LEW/Pit LH/Mav MHS/Gib MNRA/N WN/N WKY/OlaHsd WTC/Kyo LOU/CHan MNR/N ODU/N WF/Pit WIST/Nhg SR/Jr MNS/Gib NP9 OKA/Wsl OM/Ztm P5C PVG/Pit SD/Rij SHR/OlaHsd SHRSP/Riv WAG/RijKyo GK/KyoSwe M520/N ACI/N BN-Lx/Cub LN/Mav GH/Omr NEDH/K SS/Jr COP/OlaHsd
Genes: Arhgap6

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8
7.	Electronic Submission of SSLP Data Sets	Wilder R. Oct.2000. National Institute of Arthritis and Musculoskeletal and Skin Diseases, ARB Rat Genetic Database

Strains and Sequence

Sequence


Forward Primer	AATCCCTGCTGAATGCAATT
Reverse Primer	ATGTGCAAACATTTGAACATCC

Strain Variation

Strain, Expected Size(s)

ACI/N	118
AVN/Orl	124
BBDP/Rhw	132
BBDR/Rhw	132
BC/CpbU	118
BDIX/Han	132
BDVII/Cub	132
BN-Lx/Cub	124
BN/SsNHsd	124
BP/Cub	132
BUF/Pit	132
COP/OlaHsd	118

DA/PitN	130
DON/Melb	132
F344/Pit	132
FHH/Eur	118
GH/Omr	118
GK/KyoSwe	130
IS/Kyo	130
LE/Mol	132
LEW/Pit	124
LH/Mav	132
LN/Mav	110
LOU/CHan	132

M520/N	132
MHS/Gib	132
MNR/N	132
MNRA/N	110
MNS/Gib	132
NEDH/K	132
NP9	132
ODU/N	130
OKA/Wsl	130
OM/Ztm	132
P5C	132
PVG/Pit	114

SD/Rij	132
SHR/OlaHsd	130
SHRSP/Riv	130
SR/Jr	132
SS/Jr	132
WAG/RijKyo	132
WF/Pit	132
WIST/Nhg	113
WKY/OlaHsd	130
WN/N	132
WTC/Kyo	124

Region

Genes in Region

The following Genes overlap with this region.

RGD ID	Symbol	Name	Chr	Start	Stop	Species
2323364	Arhgap6	Rho GTPase activating protein 6	X	24953464	25490003	Rat

Nucleotide Sequences


GenBank Nucleotide	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CM000251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Additional Information

RGD Curation Notes

Note Type	Note	Reference

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100363276	UniSTS
UniSTS	119620	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: DXMgh8