YBX1 (Y-box binding protein 1) - Rat Genome Database

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Gene: YBX1 (Y-box binding protein 1) Homo sapiens
Analyze
Symbol: YBX1
Name: Y-box binding protein 1
RGD ID: 732883
HGNC Page HGNC:8014
Description: Enables C5-methylcytidine-containing RNA reader activity; GTPase binding activity; and nucleic acid binding activity. Involved in RNA transport; positive regulation of macromolecule biosynthetic process; and protein localization to cytoplasmic stress granule. Located in several cellular components, including cytoplasmic stress granule; endoplasmic reticulum; and extracellular exosome. Part of CRD-mediated mRNA stability complex and U12-type spliceosomal complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BP-8; CBF-A; CCAAT-binding transcription factor I subunit A; CSDA2; CSDB; DBPB; DNA-binding protein B; EFI-A; enhancer factor I subunit A; major histocompatibility complex, class II, Y box-binding protein I; MDR-NF1; MGC104858; MGC110976; MGC117250; NSEP-1; NSEP1; nuclease sensitive element binding protein 1; nuclease-sensitive element-binding protein 1; Y box binding protein 1; Y-box transcription factor; Y-box-binding protein 1; YB-1; YB1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: YBX1P1   YBX1P10   YBX1P2   YBX1P3   YBX1P4   YBX1P5   YBX1P6   YBX1P7   YBX1P8   YBX1P9  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,682,418 - 42,703,805 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,682,418 - 42,703,805 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,148,089 - 43,169,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,920,653 - 42,940,607 (+)NCBINCBI36Build 36hg18NCBI36
Build 34142,817,216 - 42,837,113NCBI
Celera141,429,993 - 41,449,949 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,269,041 - 41,287,988 (+)NCBIHuRef
HuRef141,268,237 - 41,268,497 (+)NCBIHuRef
CHM1_1143,264,924 - 43,284,881 (+)NCBICHM1_1
T2T-CHM13v2.0142,552,913 - 42,574,300 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(Z)-3-butylidenephthalide  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (EXP)
3',5'-cyclic UMP  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (EXP)
beauvericin  (EXP)
Benzo[k]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (EXP)
bisphenol F  (EXP)
caffeine  (EXP)
calcidiol  (ISO)
chloropicrin  (EXP)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (EXP,ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (EXP)
coumestrol  (EXP)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
cypermethrin  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
doxorubicin  (EXP)
folic acid  (ISO)
FR900359  (EXP)
indometacin  (EXP)
ivermectin  (EXP)
lead(0)  (EXP)
lipopolysaccharide  (EXP)
lithium chloride  (EXP)
mercury atom  (EXP)
mercury(0)  (EXP)
Mesaconitine  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
miconazole  (ISO)
Monobutylphthalate  (ISO)
ozone  (ISO)
p-toluidine  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
quinoline  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (EXP)
SCH 23390  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP,ISO)
sulfadimethoxine  (ISO)
T-2 toxin  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
urethane  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transcriptional regulation by p53. Beckerman R and Prives C, Cold Spring Harb Perspect Biol. 2010 Aug;2(8):a000935. doi: 10.1101/cshperspect.a000935. Epub 2010 Apr 28.
2. Expression of the multifunctional Y-box protein, YB-1, in myofibroblasts of the infarcted rat heart. Kamalov G, etal., Biochem Biophys Res Commun. 2005 Aug 19;334(1):239-44.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Inhibition of transcription by platinum antitumor compounds. Todd RC and Lippard SJ, Metallomics. 2009;1(4):280-91. doi: 10.1039/b907567d.
5. High expression of YB-1 gene in erythroid cells in patients with refractory anemia. Yokoyama H, etal., Int J Hematol. 2003 Oct;78(3):213-8.
Additional References at PubMed
PMID:1738588   PMID:1891370   PMID:2977358   PMID:3174636   PMID:7628487   PMID:7651426   PMID:7862639   PMID:8188694   PMID:8254772   PMID:8657568   PMID:8871564   PMID:9409758  
PMID:9461420   PMID:9472608   PMID:9830047   PMID:9927044   PMID:10082537   PMID:10318844   PMID:10559330   PMID:10573156   PMID:10809782   PMID:10817758   PMID:10906122   PMID:11162447  
PMID:11175333   PMID:11698476   PMID:11731270   PMID:11751932   PMID:11788582   PMID:11851341   PMID:11907223   PMID:11973333   PMID:12080043   PMID:12168660   PMID:12192037   PMID:12226669  
PMID:12379116   PMID:12477932   PMID:12565174   PMID:12604611   PMID:12646178   PMID:12674497   PMID:12695516   PMID:12743601   PMID:12777385   PMID:12917425   PMID:14559993   PMID:14718551  
PMID:14752049   PMID:15123725   PMID:15136035   PMID:15146077   PMID:15146197   PMID:15229244   PMID:15327898   PMID:15489334   PMID:15592455   PMID:15615704   PMID:15702969   PMID:15735691  
PMID:15750632   PMID:15806160   PMID:15840729   PMID:16055720   PMID:16093352   PMID:16101161   PMID:16159877   PMID:16198352   PMID:16251272   PMID:16354698   PMID:16415342   PMID:16455055  
PMID:16508950   PMID:16797541   PMID:17081983   PMID:17267499   PMID:17289661   PMID:17332742   PMID:17339575   PMID:17418094   PMID:17459055   PMID:17572683   PMID:17595327   PMID:17620599  
PMID:17643375   PMID:17674968   PMID:17686777   PMID:17822788   PMID:17932509   PMID:17967494   PMID:17967896   PMID:18029348   PMID:18075498   PMID:18172301   PMID:18258596   PMID:18307537  
PMID:18316615   PMID:18335541   PMID:18377424   PMID:18571458   PMID:18800033   PMID:18809583   PMID:18851979   PMID:18854154   PMID:18978732   PMID:19029303   PMID:19036157   PMID:19098458  
PMID:19135240   PMID:19151767   PMID:19167051   PMID:19174163   PMID:19274049   PMID:19323802   PMID:19343720   PMID:19411069   PMID:19454010   PMID:19483673   PMID:19517610   PMID:19523114  
PMID:19561594   PMID:19648825   PMID:19713745   PMID:19738201   PMID:19838214   PMID:19901122   PMID:19930682   PMID:19996271   PMID:20004191   PMID:20011972   PMID:20017303   PMID:20190818  
PMID:20332234   PMID:20398058   PMID:20431927   PMID:20458337   PMID:20596676   PMID:20599698   PMID:20696395   PMID:20838384   PMID:20844753   PMID:20856196   PMID:20929136   PMID:20929326  
PMID:20972445   PMID:21067243   PMID:21081503   PMID:21083641   PMID:21138866   PMID:21145461   PMID:21150319   PMID:21151833   PMID:21170361   PMID:21182205   PMID:21245151   PMID:21280222  
PMID:21282530   PMID:21344396   PMID:21369783   PMID:21392397   PMID:21423216   PMID:21518489   PMID:21565611   PMID:21595987   PMID:21630125   PMID:21642987   PMID:21652770   PMID:21653829  
PMID:21695211   PMID:21730024   PMID:21781495   PMID:21849455   PMID:21873635   PMID:21909940   PMID:21968648   PMID:21987172   PMID:21988832   PMID:22095225   PMID:22095791   PMID:22113938  
PMID:22118625   PMID:22134169   PMID:22145905   PMID:22199357   PMID:22215526   PMID:22268729   PMID:22280412   PMID:22284440   PMID:22339596   PMID:22365833   PMID:22417301   PMID:22519956  
PMID:22590640   PMID:22615490   PMID:22619371   PMID:22623428   PMID:22658674   PMID:22674792   PMID:22681889   PMID:22730292   PMID:22772059   PMID:22787154   PMID:22843890   PMID:22855482  
PMID:22863883   PMID:22939629   PMID:22967496   PMID:22990118   PMID:23084401   PMID:23125841   PMID:23151878   PMID:23160378   PMID:23178914   PMID:23184937   PMID:23216250   PMID:23254330  
PMID:23285076   PMID:23395237   PMID:23398456   PMID:23402259   PMID:23438482   PMID:23443559   PMID:23462806   PMID:23463506   PMID:23499936   PMID:23589019   PMID:23613305   PMID:23658892  
PMID:23663784   PMID:23672612   PMID:23749898   PMID:23775496   PMID:23804301   PMID:23822148   PMID:23825951   PMID:23838318   PMID:23851501   PMID:23872051   PMID:23973329   PMID:23986595  
PMID:24044901   PMID:24075827   PMID:24107631   PMID:24141788   PMID:24165022   PMID:24189637   PMID:24211838   PMID:24217978   PMID:24260353   PMID:24260892   PMID:24335958   PMID:24337748  
PMID:24349210   PMID:24378923   PMID:24443788   PMID:24457600   PMID:24461929   PMID:24648416   PMID:24711643   PMID:24729449   PMID:24770864   PMID:24774443   PMID:24796623   PMID:24817634  
PMID:24833360   PMID:24885403   PMID:24947514   PMID:24965446   PMID:24981860   PMID:25078572   PMID:25144556   PMID:25156912   PMID:25201740   PMID:25270600   PMID:25292190   PMID:25324306  
PMID:25354590   PMID:25398005   PMID:25402957   PMID:25437307   PMID:25497084   PMID:25515538   PMID:25539742   PMID:25544376   PMID:25605055   PMID:25639555   PMID:25640309   PMID:25645014  
PMID:25674237   PMID:25681748   PMID:25720531   PMID:25720964   PMID:25735744   PMID:25737280   PMID:25790262   PMID:25796446   PMID:25797255   PMID:25800057   PMID:25877750   PMID:25904138  
PMID:25921289   PMID:25948554   PMID:25957686   PMID:25959498   PMID:25965573   PMID:25993060   PMID:26055210   PMID:26093350   PMID:26122241   PMID:26147853   PMID:26184334   PMID:26186194  
PMID:26193840   PMID:26240386   PMID:26269332   PMID:26314494   PMID:26318844   PMID:26343856   PMID:26344197   PMID:26355086   PMID:26360636   PMID:26430912   PMID:26453809   PMID:26472760  
PMID:26496610   PMID:26498684   PMID:26512918   PMID:26549023   PMID:26641092   PMID:26673895   PMID:26725010   PMID:26725322   PMID:26794392   PMID:26805816   PMID:26816005   PMID:26831064  
PMID:26839216   PMID:26845719   PMID:26857528   PMID:26931209   PMID:26936129   PMID:26939718   PMID:26979993   PMID:27013200   PMID:27025967   PMID:27044807   PMID:27049334   PMID:27072400  
PMID:27129302   PMID:27158335   PMID:27168020   PMID:27174937   PMID:27248496   PMID:27286449   PMID:27320910   PMID:27322209   PMID:27354655   PMID:27371774   PMID:27384875   PMID:27397581  
PMID:27524241   PMID:27544639   PMID:27545878   PMID:27559612   PMID:27576135   PMID:27591049   PMID:27607350   PMID:27609421   PMID:27634302   PMID:27684187   PMID:27699813   PMID:27713156  
PMID:27751836   PMID:27794479   PMID:27821766   PMID:27879270   PMID:27911878   PMID:27922666   PMID:27976729   PMID:28009354   PMID:28027578   PMID:28031328   PMID:28035913   PMID:28065597  
PMID:28077578   PMID:28107702   PMID:28225217   PMID:28302118   PMID:28302793   PMID:28341602   PMID:28382490   PMID:28400280   PMID:28428004   PMID:28431233   PMID:28443643   PMID:28473536  
PMID:28514442   PMID:28515276   PMID:28624808   PMID:28708785   PMID:28712289   PMID:28714514   PMID:28782557   PMID:28902428   PMID:28977666   PMID:28986522   PMID:29024700   PMID:29073095  
PMID:29113949   PMID:29117863   PMID:29133115   PMID:29180619   PMID:29187452   PMID:29229926   PMID:29274785   PMID:29289594   PMID:29298432   PMID:29331416   PMID:29395067   PMID:29449217  
PMID:29467282   PMID:29478751   PMID:29507755   PMID:29511296   PMID:29517281   PMID:29529249   PMID:29540532   PMID:29559746   PMID:29669758   PMID:29669786   PMID:29670170   PMID:29712925  
PMID:29737063   PMID:29743296   PMID:29777862   PMID:29802200   PMID:29845934   PMID:29884807   PMID:29995936   PMID:30021884   PMID:30126195   PMID:30196744   PMID:30209976   PMID:30221675  
PMID:30258100   PMID:30275756   PMID:30278358   PMID:30286788   PMID:30320910   PMID:30321499   PMID:30344098   PMID:30349055   PMID:30419346   PMID:30426615   PMID:30463901   PMID:30470227  
PMID:30575818   PMID:30605522   PMID:30824926   PMID:30833792   PMID:30864697   PMID:30890647   PMID:30903644   PMID:30905819   PMID:30940648   PMID:30948266   PMID:30997501   PMID:31046837  
PMID:31059266   PMID:31091453   PMID:31113805   PMID:31153975   PMID:31180040   PMID:31180492   PMID:31253590   PMID:31266968   PMID:31300519   PMID:31324722   PMID:31353912   PMID:31358880  
PMID:31358969   PMID:31405213   PMID:31476572   PMID:31481087   PMID:31495785   PMID:31501420   PMID:31586073   PMID:31640799   PMID:31665637   PMID:31672764   PMID:31713447   PMID:31868085  
PMID:31944153   PMID:31980649   PMID:31995728   PMID:32015133   PMID:32041737   PMID:32047913   PMID:32068487   PMID:32112110   PMID:32129710   PMID:32206124   PMID:32209435   PMID:32216017  
PMID:32269044   PMID:32322062   PMID:32423800   PMID:32457219   PMID:32513696   PMID:32529326   PMID:32552912   PMID:32561752   PMID:32585856   PMID:32665550   PMID:32681926   PMID:32698014  
PMID:32710623   PMID:32787509   PMID:32788342   PMID:32807901   PMID:32814053   PMID:32850835   PMID:32877691   PMID:32894437   PMID:32905556   PMID:32929329   PMID:32929382   PMID:32947956  
PMID:32963329   PMID:32994395   PMID:33022573   PMID:33024031   PMID:33054752   PMID:33064355   PMID:33087562   PMID:33194618   PMID:33239784   PMID:33247987   PMID:33277362   PMID:33305682  
PMID:33306668   PMID:33314480   PMID:33361760   PMID:33377748   PMID:33379356   PMID:33397955   PMID:33545068   PMID:33556375   PMID:33596420   PMID:33644029   PMID:33729478   PMID:33731348  
PMID:33762435   PMID:33763698   PMID:33767152   PMID:33781803   PMID:33838681   PMID:33934437   PMID:33961781   PMID:33989516   PMID:34004371   PMID:34079125   PMID:34082012   PMID:34110104  
PMID:34147029   PMID:34218256   PMID:34224843   PMID:34244791   PMID:34265304   PMID:34266873   PMID:34281280   PMID:34294889   PMID:34329467   PMID:34364882   PMID:34366628   PMID:34373451  
PMID:34428256   PMID:34440660   PMID:34462429   PMID:34465866   PMID:34469566   PMID:34499772   PMID:34593639   PMID:34597346   PMID:34643163   PMID:34650049   PMID:34680946   PMID:34696665  
PMID:34709966   PMID:34728620   PMID:34766549   PMID:34780058   PMID:34991621   PMID:35008856   PMID:35013218   PMID:35013556   PMID:35022570   PMID:35031058   PMID:35063084   PMID:35140242  
PMID:35182466   PMID:35189699   PMID:35231468   PMID:35239512   PMID:35256949   PMID:35271311   PMID:35273154   PMID:35278854   PMID:35338135   PMID:35387975   PMID:35446349   PMID:35508543  
PMID:35509820   PMID:35521747   PMID:35541917   PMID:35563538   PMID:35637952   PMID:35676659   PMID:35727431   PMID:35819319   PMID:35831314   PMID:35831895   PMID:35844135   PMID:35850772  
PMID:35904175   PMID:35917517   PMID:35929633   PMID:35944360   PMID:36012594   PMID:36028903   PMID:36042349   PMID:36044842   PMID:36057605   PMID:36059274   PMID:36114006   PMID:36123327  
PMID:36180891   PMID:36199071   PMID:36215168   PMID:36244648   PMID:36273042   PMID:36300783   PMID:36305789   PMID:36307841   PMID:36328428   PMID:36339263   PMID:36373674   PMID:36380368  
PMID:36385375   PMID:36424410   PMID:36475703   PMID:36517590   PMID:36526897   PMID:36574265   PMID:36576700   PMID:36600625   PMID:36604567   PMID:36732658   PMID:36762613   PMID:36943004  
PMID:36949044   PMID:36961927   PMID:37120454   PMID:37151849   PMID:37161388   PMID:37208357   PMID:37211699   PMID:37248979   PMID:37290675   PMID:37339496   PMID:37370092   PMID:37489617  
PMID:37500615   PMID:37540752   PMID:37563362   PMID:37611648   PMID:37616343   PMID:37685922   PMID:37689310   PMID:37827155   PMID:37907737   PMID:37929660   PMID:37993085   PMID:38003589  
PMID:38104157   PMID:38113892   PMID:38172120   PMID:38214357   PMID:38245532   PMID:38246397   PMID:38253057   PMID:38254206   PMID:38255791   PMID:38279484   PMID:38378679   PMID:38424195  
PMID:38436697   PMID:38459892   PMID:38499475   PMID:38538658  


Genomics

Comparative Map Data
YBX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,682,418 - 42,703,805 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,682,418 - 42,703,805 (+)EnsemblGRCh38hg38GRCh38
GRCh37143,148,089 - 43,169,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,920,653 - 42,940,607 (+)NCBINCBI36Build 36hg18NCBI36
Build 34142,817,216 - 42,837,113NCBI
Celera141,429,993 - 41,449,949 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,269,041 - 41,287,988 (+)NCBIHuRef
HuRef141,268,237 - 41,268,497 (+)NCBIHuRef
CHM1_1143,264,924 - 43,284,881 (+)NCBICHM1_1
T2T-CHM13v2.0142,552,913 - 42,574,300 (+)NCBIT2T-CHM13v2.0
Ybx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,134,524 - 119,153,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,135,178 - 119,151,801 (-)EnsemblGRCm39 Ensembl
GRCm384119,277,327 - 119,296,265 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,277,981 - 119,294,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv374118,949,932 - 118,967,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,776,166 - 118,792,322 (-)NCBIMGSCv36mm8
Celera4118,005,093 - 118,022,345 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
Ybx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,167,444 - 138,188,155 (-)NCBIGRCr8
mRatBN7.25132,882,137 - 132,898,885 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,882,145 - 132,898,862 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,609,596 - 135,626,412 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,366,056 - 137,382,871 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,386,642 - 137,403,467 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,319,754 - 138,336,721 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,319,762 - 138,336,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,132,028 - 142,152,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,859,176 - 139,875,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15139,864,480 - 139,881,067 (-)NCBI
Celera5131,407,618 - 131,424,346 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ybx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,234,054 - 2,251,708 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,234,052 - 2,254,528 (+)NCBIChiLan1.0ChiLan1.0
YBX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,109,342 - 184,130,280 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,252,311 - 183,271,944 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,982,365 - 42,002,430 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,360,052 - 43,380,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,360,052 - 43,380,313 (+)Ensemblpanpan1.1panPan2
YBX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115646,301 - 666,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15646,584 - 666,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha15901,013 - 921,059 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015727,630 - 747,689 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15727,637 - 747,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115637,087 - 657,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015698,535 - 718,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015713,677 - 733,729 (-)NCBIUU_Cfam_GSD_1.0
Ybx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,201,677 - 58,222,942 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,026,377 - 24,047,724 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,026,459 - 24,047,724 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YBX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,716,774 - 168,736,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,716,782 - 168,736,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,189,780 - 156,217,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YBX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,229,927 - 90,250,213 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603326,660,015 - 26,680,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ybx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248921,939,098 - 1,957,623 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248921,939,641 - 1,957,621 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in YBX1
8 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p34.2-34.1(chr1:40693289-44514104)x1 copy number loss See cases [RCV000050706] Chr1:40693289..44514104 [GRCh38]
Chr1:41158961..44979776 [GRCh37]
Chr1:40931548..44752363 [NCBI36]
Chr1:1p34.2-34.1
pathogenic
GRCh38/hg38 1p34.3-33(chr1:39479787-47688131)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|See cases [RCV000051817] Chr1:39479787..47688131 [GRCh38]
Chr1:39945459..48153803 [GRCh37]
Chr1:39718046..47926390 [NCBI36]
Chr1:1p34.3-33
pathogenic
GRCh38/hg38 1p34.3-34.1(chr1:38222737-45636176)x3 copy number gain See cases [RCV000051803] Chr1:38222737..45636176 [GRCh38]
Chr1:38688409..46101848 [GRCh37]
Chr1:38460996..45874435 [NCBI36]
Chr1:1p34.3-34.1
pathogenic
GRCh38/hg38 1p34.2-34.1(chr1:40462415-44668040)x1 copy number loss See cases [RCV000053837] Chr1:40462415..44668040 [GRCh38]
Chr1:40928087..45133712 [GRCh37]
Chr1:40700674..44906299 [NCBI36]
Chr1:1p34.2-34.1
pathogenic
GRCh38/hg38 1p34.2(chr1:42653385-43093829)x1 copy number loss See cases [RCV000141339] Chr1:42653385..43093829 [GRCh38]
Chr1:43119056..43559500 [GRCh37]
Chr1:42891643..43332087 [NCBI36]
Chr1:1p34.2
likely pathogenic
GRCh38/hg38 1p34.2(chr1:40834404-43123071)x1 copy number loss See cases [RCV000142267] Chr1:40834404..43123071 [GRCh38]
Chr1:41300076..43588742 [GRCh37]
Chr1:41072663..43361329 [NCBI36]
Chr1:1p34.2
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p34.2-34.1(chr1:42914303-45001279)x1 copy number loss See cases [RCV000446029] Chr1:42914303..45001279 [GRCh37]
Chr1:1p34.2-34.1
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33
pathogenic
NC_000001.10:g.(?_42922237)_(44395893_?)del deletion not provided [RCV001939188] Chr1:42922237..44395893 [GRCh37]
Chr1:1p34.2-34.1
pathogenic
NM_004559.5(YBX1):c.88A>T (p.Thr30Ser) single nucleotide variant Inborn genetic diseases [RCV002879504] Chr1:42682653 [GRCh38]
Chr1:43148324 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.155A>G (p.Lys52Arg) single nucleotide variant Inborn genetic diseases [RCV002844555] Chr1:42682720 [GRCh38]
Chr1:43148391 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.58C>T (p.Leu20Phe) single nucleotide variant Inborn genetic diseases [RCV002712197] Chr1:42682623 [GRCh38]
Chr1:43148294 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.967G>A (p.Ala323Thr) single nucleotide variant Inborn genetic diseases [RCV002832094] Chr1:42701007 [GRCh38]
Chr1:43166678 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.379G>C (p.Gly127Arg) single nucleotide variant Inborn genetic diseases [RCV002831366] Chr1:42696666 [GRCh38]
Chr1:43162337 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.466C>T (p.Arg156Cys) single nucleotide variant Inborn genetic diseases [RCV002835800] Chr1:42696753 [GRCh38]
Chr1:43162424 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.109G>A (p.Gly37Ser) single nucleotide variant Inborn genetic diseases [RCV003188949] Chr1:42682674 [GRCh38]
Chr1:43148345 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_004559.5(YBX1):c.454A>G (p.Arg152Gly) single nucleotide variant Inborn genetic diseases [RCV003359611] Chr1:42696741 [GRCh38]
Chr1:43162412 [GRCh37]
Chr1:1p34.2
uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3
likely pathogenic
GRCh38/hg38 1p34.2(chr1:42278946-43598390) copy number loss Epilepsy syndrome [RCV003986075] Chr1:42278946..43598390 [GRCh38]
Chr1:1p34.2
pathogenic
NM_004559.5(YBX1):c.507A>G (p.Glu169=) single nucleotide variant YBX1-related condition [RCV003912060] Chr1:42696794 [GRCh38]
Chr1:43162465 [GRCh37]
Chr1:1p34.2
likely benign
NM_004559.5(YBX1):c.680G>T (p.Gly227Val) single nucleotide variant YBX1-related condition [RCV003971724] Chr1:42697202 [GRCh38]
Chr1:43162873 [GRCh37]
Chr1:1p34.2
benign
NM_004559.5(YBX1):c.147C>T (p.Gly49=) single nucleotide variant YBX1-related condition [RCV003927048] Chr1:42682712 [GRCh38]
Chr1:43148383 [GRCh37]
Chr1:1p34.2
likely benign
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR137hsa-miR-137Mirtarbaseexternal_infoLuciferase reporter assayFunctional MTI23178914
MIR605hsa-miR-605-5pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:518
Count of miRNA genes:243
Interacting mature miRNAs:266
Transcripts:ENST00000321358, ENST00000332220, ENST00000436427, ENST00000467957
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
AL033735  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37143,146,353 - 43,146,488UniSTSGRCh37
Build 36142,918,940 - 42,919,075RGDNCBI36
Celera141,428,280 - 41,428,415RGD
Cytogenetic Map1p34UniSTS
HuRef141,266,524 - 41,266,659UniSTS
SHGC-149519  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37143,156,125 - 43,156,420UniSTSGRCh37
Build 36142,928,712 - 42,929,007RGDNCBI36
Celera141,438,054 - 41,438,349RGD
Cytogenetic Map1p34UniSTS
HuRef141,276,093 - 41,276,388UniSTS
TNG Radiation Hybrid Map120930.0UniSTS
PMC127671P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377105,223,235 - 105,223,451UniSTSGRCh37
GRCh37935,971,874 - 35,972,093UniSTSGRCh37
Build 367105,010,471 - 105,010,687RGDNCBI36
Celera7100,028,353 - 100,028,569RGD
Celera935,905,444 - 35,905,663UniSTS
HuRef935,925,666 - 35,925,885UniSTS
HuRef799,581,500 - 99,581,716UniSTS
CRA_TCAGchr7v27104,583,795 - 104,584,011UniSTS
Ybx1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371466,479,502 - 66,480,361UniSTSGRCh37
GRCh37935,971,299 - 35,972,156UniSTSGRCh37
GRCh371563,245,521 - 63,246,334UniSTSGRCh37
Celera1540,125,219 - 40,126,032UniSTS
Celera1446,538,569 - 46,539,428UniSTS
Celera935,904,869 - 35,905,726UniSTS
HuRef1540,068,448 - 40,069,261UniSTS
HuRef1446,649,781 - 46,650,640UniSTS
HuRef1446,649,813 - 46,650,637UniSTS
RH79815  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1p34UniSTS
Ybx1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371466,479,502 - 66,480,361UniSTSGRCh37
GRCh37935,971,299 - 35,972,156UniSTSGRCh37
GRCh371563,245,521 - 63,246,334UniSTSGRCh37
Celera1540,125,219 - 40,126,032UniSTS
Celera1446,538,569 - 46,539,428UniSTS
Celera935,904,869 - 35,905,726UniSTS
HuRef1540,068,448 - 40,069,261UniSTS
HuRef1446,649,781 - 46,650,640UniSTS
HuRef1446,649,813 - 46,650,637UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 174 214 42 31 539 33 614 216 134 59 497 229 9 12 339 1
Medium 2258 2770 1681 591 1409 431 3741 1977 3574 358 951 1379 162 1192 2449 3
Low 7 6 2 2 2 1 1 2 10 1 8 3 4 1 2
Below cutoff 1 1 13 1 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_004559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054336798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC106045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN353145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J03827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L28809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M24070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M83234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M85234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X96666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z70765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000321358   ⟹   ENSP00000361626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,682,418 - 42,703,805 (+)Ensembl
RefSeq Acc Id: ENST00000332220   ⟹   ENSP00000405937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,682,440 - 42,697,262 (+)Ensembl
RefSeq Acc Id: ENST00000436427   ⟹   ENSP00000389639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,682,987 - 42,702,349 (+)Ensembl
RefSeq Acc Id: ENST00000467957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,683,156 - 42,697,211 (+)Ensembl
RefSeq Acc Id: NM_004559   ⟹   NP_004550
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,682,418 - 42,703,805 (+)NCBI
GRCh37143,148,060 - 43,168,024 (+)NCBI
Build 36142,920,653 - 42,940,607 (+)NCBI Archive
HuRef141,269,041 - 41,287,988 (+)ENTREZGENE
HuRef141,268,237 - 41,268,497 (+)NCBI
CHM1_1143,264,764 - 43,286,335 (+)NCBI
T2T-CHM13v2.0142,552,913 - 42,574,300 (+)NCBI
Sequence:
RefSeq Acc Id: NR_132737
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,683,136 - 42,703,805 (+)NCBI
CHM1_1143,265,516 - 43,286,335 (+)NCBI
T2T-CHM13v2.0142,553,631 - 42,574,300 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047421495   ⟹   XP_047277451
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,682,418 - 42,701,046 (+)NCBI
RefSeq Acc Id: XM_054336798   ⟹   XP_054192773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0142,552,913 - 42,571,541 (+)NCBI
RefSeq Acc Id: NP_004550   ⟸   NM_004559
- UniProtKB: Q15325 (UniProtKB/Swiss-Prot),   Q14972 (UniProtKB/Swiss-Prot),   P16991 (UniProtKB/Swiss-Prot),   P16990 (UniProtKB/Swiss-Prot),   Q5FVF0 (UniProtKB/Swiss-Prot),   P67809 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000405937   ⟸   ENST00000332220
RefSeq Acc Id: ENSP00000361626   ⟸   ENST00000321358
RefSeq Acc Id: ENSP00000389639   ⟸   ENST00000436427
RefSeq Acc Id: XP_047277451   ⟸   XM_047421495
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054192773   ⟸   XM_054336798
- Peptide Label: isoform X1
Protein Domains
CSD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P67809-F1-model_v2 AlphaFold P67809 1-324 view protein structure

Promoters
RGD ID:6855188
Promoter ID:EPDNEW_H759
Type:initiation region
Name:YBX1_1
Description:Y-box binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,682,428 - 42,682,488EPDNEW
RGD ID:6787244
Promoter ID:HG_KWN:2298
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000318612,   NM_004559,   OTTHUMT00000019787,   OTTHUMT00000097210,   OTTHUMT00000097211
Position:
Human AssemblyChrPosition (strand)Source
Build 36142,919,671 - 42,921,427 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:8014 AgrOrtholog
COSMIC YBX1 COSMIC
Ensembl Genes ENSG00000065978 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000321358 ENTREZGENE
  ENST00000321358.12 UniProtKB/Swiss-Prot
  ENST00000332220.10 UniProtKB/TrEMBL
  ENST00000436427.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000065978 GTEx
HGNC ID HGNC:8014 ENTREZGENE
Human Proteome Map YBX1 Human Proteome Map
InterPro CSD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CSD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CSP_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:4904 UniProtKB/Swiss-Prot
NCBI Gene 4904 ENTREZGENE
OMIM 154030 OMIM
PANTHER COLD SHOCK DOMAIN CONTAINING PROTEINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Y-BOX-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CSD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA31791 PharmGKB
PRINTS COLDSHOCK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CSD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CSD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0JLU4_HUMAN UniProtKB/TrEMBL
  C9J5V9_HUMAN UniProtKB/TrEMBL
  H0Y449_HUMAN UniProtKB/TrEMBL
  P16990 ENTREZGENE
  P16991 ENTREZGENE
  P67809 ENTREZGENE
  Q14972 ENTREZGENE
  Q15325 ENTREZGENE
  Q5FVF0 ENTREZGENE
  Q6PKI6_HUMAN UniProtKB/TrEMBL
  YBOX1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary P16990 UniProtKB/Swiss-Prot
  P16991 UniProtKB/Swiss-Prot
  Q14972 UniProtKB/Swiss-Prot
  Q15325 UniProtKB/Swiss-Prot
  Q5FVF0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 YBX1  Y-box binding protein 1    Y box binding protein 1  Symbol and/or name change 5135510 APPROVED