RGD:155939923 Rat Genome Database

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Variant: RGD:155939923 -  Homo sapiens

RGD ID: 155939923
ClinVar ID: CV2293999
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC129930347  YBX1  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 1 43,148,324
GRCh38 1 42,682,653
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Trait Synonyms
NM_004559.5:c.88A>T
NC_000001.11:g.42682653A>T
NC_000001.10:g.43148324A>T
NM_004559.3:c.88A>T
More... 		08/16/2022 missense variant uncertain significance AllHighlyPenetrant

Variant Details
Variant Transcripts
Gene Symbol:YBX1
Accession:NM_004559
Location:EXON
Amino Acid Prediction: T to S (nonsynonymous)
Amino Acid Position: 30
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSSEAETQQPPAAPPAAPALSAADTKPGTSGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDT
KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ
NYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG
YRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQ
GGAE*

Gene Symbol:YBX1
Accession:XM_047421495
Location:EXON
Amino Acid Prediction: T to S (nonsynonymous)
Amino Acid Position: 30
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSSEAETQQPPAAPPAAPALSAADTKPGTSGSGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDT
KEDVFVHQGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRR
RRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDE
TQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE*

Gene Symbol:YBX1
Accession:NR_132737
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV004149394 CLINVAR
MedGen CN169374 CLINVAR
NCBI Gene LOC129930347 CLINVAR
  YBX1 CLINVAR
OMIM 154030 CLINVAR