YBX1P8 (Y-box binding protein 1 pseudogene 8) - Rat Genome Database

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Gene: YBX1P8 (Y-box binding protein 1 pseudogene 8) Homo sapiens
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Symbol: YBX1P8
Name: Y-box binding protein 1 pseudogene 8
RGD ID: 5686984
HGNC Page HGNC:42429
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FLJ20344
Related Functional Gene: YBX1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X46,684,788 - 46,685,498 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX46,684,765 - 46,685,707 (-)EnsemblGRCh38hg38GRCh38
GRCh37X46,544,223 - 46,544,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp11.3NCBI
HuRefX44,256,872 - 44,257,582 (-)NCBIHuRef
CHM1_1X46,576,319 - 46,577,029 (-)NCBICHM1_1
T2T-CHM13v2.0X46,091,779 - 46,092,489 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:95
Interacting mature miRNAs:96
Transcripts:ENST00000421881
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 4 2 4 1 138 1 9 2 12 2 11 7 2 3
Below cutoff 368 385 555 162 411 100 733 272 961 69 483 445 67 242 411 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000421881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX46,684,765 - 46,685,707 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC YBX1P8 COSMIC
Ensembl Genes ENSG00000226048 Ensembl
GTEx ENSG00000226048 GTEx
HGNC ID HGNC:42429 ENTREZGENE
Human Proteome Map YBX1P8 Human Proteome Map
NCBI Gene YBX1P8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 YBX1P8  Y-box binding protein 1 pseudogene 8    Y box binding protein 1 pseudogene 8  Symbol and/or name change 5135510 APPROVED