Ybx1-ps24 (Y box binding protein 1, pseudogene 24) - Rat Genome Database

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Gene: Ybx1-ps24 (Y box binding protein 1, pseudogene 24) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ybx1-ps24
Name: Y box binding protein 1, pseudogene 24
RGD ID: 1588675
Description: Predicted to enable nucleic acid binding activity. Predicted to be located in nucleus.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: ENSRNOG00000070438; LOC691016; similar to nuclease sensitive element binding protein 1; Y box protein 1 related, pseudogene 7; Ybx1-ps7
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Ybx1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86133,421,758 - 133,423,129 (+)NCBIGRCr8
mRatBN7.26127,657,376 - 127,658,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6127,657,336 - 127,658,976 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl6127,657,336 - 127,658,976 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6127,780,902 - 127,782,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06128,075,950 - 128,077,322 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06127,434,697 - 127,436,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06132,645,143 - 132,654,052 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06141,815,219 - 141,823,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46133,039,208 - 133,082,962 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6125,202,309 - 125,211,071 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8224907  


Genomics

Variants

.
Variants in Ybx1-ps24
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
D6Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26127,656,788 - 127,656,935 (+)MAPPERmRatBN7.2
Rnor_6.06132,652,096 - 132,652,240NCBIRnor6.0
Rnor_5.06141,822,172 - 141,822,316UniSTSRnor5.0
RGSC_v3.46133,081,235 - 133,081,380RGDRGSC3.4
RGSC_v3.46133,081,236 - 133,081,380UniSTSRGSC3.4
RGSC_v3.16133,087,422 - 133,087,567RGD
Celera6125,209,113 - 125,209,259UniSTS
Cytogenetic Map6q32UniSTS
Fos  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26127,654,823 - 127,655,360 (+)MAPPERmRatBN7.2
Rnor_6.06132,650,131 - 132,650,667NCBIRnor6.0
Rnor_5.06141,820,207 - 141,820,743UniSTSRnor5.0
RGSC_v3.46133,079,164 - 133,079,700UniSTSRGSC3.4
Celera6125,207,297 - 125,207,833UniSTS
Cytogenetic Map6q32UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000112992   ⟹   ENSRNOP00000079937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6127,657,336 - 127,658,976 (+)Ensembl
Protein Sequences
GenBank Protein AAA16856 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079937.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000079937   ⟸   ENSRNOT00000112992
Protein Domains
CSD

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36286 BioCyc
Ensembl Genes ENSRNOG00000070438 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000112992.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro CSD UniProtKB/TrEMBL
  CSP_DNA-bd UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
NCBI Gene 691016 ENTREZGENE
PANTHER COLD SHOCK DOMAIN CONTAINING PROTEINS UniProtKB/TrEMBL
  Y-BOX-BINDING PROTEIN 1 UniProtKB/TrEMBL
Pfam CSD UniProtKB/TrEMBL
PhenoGen Ybx1-ps24 PhenoGen
PROSITE CSD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070438 RatGTEx
SMART CSP UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
UniProt A0A8I5ZPD8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-13 Ybx1-ps24  Y box binding protein 1, pseudogene 24  Ybx1-ps7  Y box protein 1 related, pseudogene 7  Name and Symbol changed 629549 APPROVED
2022-06-02 Ybx1-ps7  Y box protein 1 related, pseudogene 7  ENSRNOG00000070438    Data merged from RGD:150343382 737654 PROVISIONAL
2021-08-31 ENSRNOG00000070438        Symbol and Name status set to provisional 45752 PROVISIONAL
2019-05-08 Ybx1-ps7  Y box protein 1 related, pseudogene 7  LOC691016  similar to nuclease sensitive element binding protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC691016  similar to nuclease sensitive element binding protein 1  LOC684222  similar to nuclease sensitive element binding protein 1  Data merged from RGD:1592723 1643240 APPROVED
2006-11-20 LOC684222  similar to nuclease sensitive element binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691016  similar to nuclease sensitive element binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL