Cacng4 (calcium channel, voltage-dependent, gamma subunit 4) - Rat Genome Database

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Gene: Cacng4 (calcium channel, voltage-dependent, gamma subunit 4) Mus musculus
Analyze
Symbol: Cacng4
Name: calcium channel, voltage-dependent, gamma subunit 4
RGD ID: 731428
MGI Page MGI
Description: Predicted to enable calcium channel regulator activity; ionotropic glutamate receptor binding activity; and voltage-gated calcium channel activity. Acts upstream of or within transmission of nerve impulse. Located in somatodendritic compartment. Part of AMPA glutamate receptor complex. Is active in glutamatergic synapse. Is expressed in several structures, including central nervous system; eye; genitourinary system; gut; and respiratory system. Orthologous to human CACNG4 (calcium voltage-gated channel auxiliary subunit gamma 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI413107; AW491861; neuronal voltage-gated calcium channel gamma-4 subunit; TARP gamma-4; transmembrane AMPAR regulatory protein gamma-4; voltage-dependent calcium channel gamma-4 subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,623,183 - 107,685,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,623,183 - 107,685,383 (-)EnsemblGRCm39 Ensembl
GRCm3811107,732,357 - 107,794,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,732,357 - 107,794,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,596,094 - 107,655,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,550,870 - 107,610,554 (-)NCBIMGSCv36mm8
Celera11119,469,632 - 119,528,904 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of three novel Ca(2+) channel gamma subunit genes reveals molecular diversification by tandem and chromosome duplication. Burgess DL, etal., Genome Res 1999 Dec;9(12):1204-13.
2. Identification of Transcription Factor-Gene Regulatory Network in Acute Myocardial Infarction. Cao Y, etal., Heart Lung Circ. 2017 Apr;26(4):343-353. doi: 10.1016/j.hlc.2016.06.1209. Epub 2016 Jul 26.
3. Different Profile of mRNA Expression in Sinoatrial Node from Streptozotocin-Induced Diabetic Rat. Ferdous Z, etal., PLoS One. 2016 Apr 20;11(4):e0153934. doi: 10.1371/journal.pone.0153934. eCollection 2016.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10734232   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15226823   PMID:15677329   PMID:16141072   PMID:16141073  
PMID:16985003   PMID:17295603   PMID:17880893   PMID:17880894   PMID:18341993   PMID:18634809   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22632720   PMID:30911681   PMID:36604605  


Genomics

Comparative Map Data
Cacng4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,623,183 - 107,685,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,623,183 - 107,685,383 (-)EnsemblGRCm39 Ensembl
GRCm3811107,732,357 - 107,794,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,732,357 - 107,794,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,596,094 - 107,655,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,550,870 - 107,610,554 (-)NCBIMGSCv36mm8
Celera11119,469,632 - 119,528,904 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.29NCBI
CACNG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,964,707 - 67,033,398 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,964,707 - 67,033,398 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,960,823 - 65,029,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,391,475 - 62,459,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,391,474 - 62,459,980NCBI
Celera1761,533,692 - 61,602,193 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,402,967 - 60,418,125 (+)NCBIHuRef
CHM1_11765,024,942 - 65,093,343 (+)NCBICHM1_1
T2T-CHM13v2.01767,840,502 - 67,909,206 (+)NCBIT2T-CHM13v2.0
Cacng4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,183,410 - 93,245,470 (-)NCBIGRCr8
mRatBN7.21092,683,778 - 92,745,842 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,683,761 - 92,746,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,744,195 - 97,803,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,207,217 - 97,266,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,615,988 - 92,675,416 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,954,160 - 96,015,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,951,234 - 96,015,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,688,305 - 95,746,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,139,397 - 97,214,444 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,153,766 - 97,228,814 (-)NCBI
Celera1091,351,585 - 91,410,600 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,219,631 - 6,280,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,219,637 - 6,278,759 (+)NCBIChiLan1.0ChiLan1.0
CACNG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,993,902 - 83,062,365 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,813,199 - 87,882,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,900,645 - 60,969,659 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11766,159,571 - 66,176,442 (+)NCBIpanpan1.1PanPan1.1panPan2
CACNG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,449,465 - 13,464,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,449,450 - 13,462,645 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,344,165 - 14,404,358 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,112,749 - 15,172,995 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,112,694 - 15,173,656 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,060,134 - 14,120,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,413,810 - 13,473,970 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,415,469 - 13,475,483 (+)NCBIUU_Cfam_GSD_1.0
Cacng4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,107,963 - 13,143,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,053,391 - 6,059,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,051,021 - 6,062,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,391,079 - 13,452,174 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,391,080 - 13,454,542 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,761,277 - 13,824,577 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,413,981 - 54,482,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,413,965 - 54,482,561 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,452,813 - 25,522,456 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,359,806 - 1,419,443 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,359,937 - 1,419,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cacng4
1923 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1418
Count of miRNA genes:598
Interacting mature miRNAs:760
Transcripts:ENSMUST00000021066, ENSMUST00000134076
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101504820114472363Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101504820114472363Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101504820114472363Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101504820114472363Mouse
1300957Pbd1_mpeak bone density 1 (mouse)Not determined11102344123112384123Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
4141702Hmtb6_mhemostasis and thrombosis rebleeding time 6 (mouse)Not determined107616344110519830Mouse

Markers in Region
Cacng4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811107,735,270 - 107,736,841UniSTSGRCm38
MGSCv3711107,596,584 - 107,598,155UniSTSGRCm37
Celera11119,470,122 - 119,471,693UniSTS
Cytogenetic Map11E1UniSTS
cM Map11 UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000021066   ⟹   ENSMUSP00000021066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11107,623,183 - 107,685,383 (-)Ensembl
GRCm38.p6 Ensembl11107,732,357 - 107,794,557 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11107,626,023 - 107,632,905 (-)Ensembl
GRCm38.p6 Ensembl11107,735,197 - 107,742,079 (-)Ensembl
RefSeq Acc Id: NM_019431   ⟹   NP_062304
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911107,623,183 - 107,685,532 (-)NCBI
GRCm3811107,732,357 - 107,794,706 (-)NCBI
MGSCv3711107,596,094 - 107,655,778 (-)RGD
Celera11119,469,632 - 119,528,904 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_062304 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI38504 (Get FASTA)   NCBI Sequence Viewer  
  AAI38507 (Get FASTA)   NCBI Sequence Viewer  
  BAE25799 (Get FASTA)   NCBI Sequence Viewer  
  CAB86386 (Get FASTA)   NCBI Sequence Viewer  
  EDL34336 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000021066
  ENSMUSP00000021066.4
GenBank Protein Q9JJV4 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_062304   ⟸   NM_019431
- UniProtKB: Q9JJV4 (UniProtKB/Swiss-Prot),   A2AAU2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000021066   ⟸   ENSMUST00000021066

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJV4-F1-model_v2 AlphaFold Q9JJV4 1-327 view protein structure

Promoters
RGD ID:8677140
Promoter ID:EPDNEW_M16601
Type:initiation region
Name:Cacng4_1
Description:Mus musculus calcium channel, voltage-dependent, gamma subunit4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811107,794,557 - 107,794,617EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859167 AgrOrtholog
Ensembl Genes ENSMUSG00000020723 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021066 ENTREZGENE
  ENSMUST00000021066.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_g4su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:54377 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1859167 ENTREZGENE
NCBI Gene 54377 ENTREZGENE
PANTHER PTHR12107:SF7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cacng4 PhenoGen
PRINTS VDCCGAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VDCCGAMMA4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AAU2 ENTREZGENE, UniProtKB/TrEMBL
  CCG4_MOUSE UniProtKB/Swiss-Prot
  Q3UNE8_MOUSE UniProtKB/TrEMBL
  Q9JJV4 ENTREZGENE