Cacng4 (calcium voltage-gated channel auxiliary subunit gamma 4) - Rat Genome Database

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Gene: Cacng4 (calcium voltage-gated channel auxiliary subunit gamma 4) Heterocephalus glaber
Analyze
Symbol: Cacng4
Name: calcium voltage-gated channel auxiliary subunit gamma 4
RGD ID: 18929515
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN positive regulation of AMPA receptor activity (ortholog); response to cocaine (ortholog); transmission of nerve impulse (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN cell body (ortholog); cell surface (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-4 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,359,806 - 1,419,443 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,359,937 - 1,419,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,359,806 - 1,419,443 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,359,937 - 1,419,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CACNG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,964,707 - 67,033,398 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,964,707 - 67,033,398 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,960,823 - 65,029,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,391,475 - 62,459,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,391,474 - 62,459,980NCBI
Celera1761,533,692 - 61,602,193 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,402,967 - 60,418,125 (+)NCBIHuRef
CHM1_11765,024,942 - 65,093,343 (+)NCBICHM1_1
T2T-CHM13v2.01767,840,502 - 67,909,206 (+)NCBIT2T-CHM13v2.0
Cacng4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,623,183 - 107,685,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,623,183 - 107,685,383 (-)EnsemblGRCm39 Ensembl
GRCm3811107,732,357 - 107,794,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,732,357 - 107,794,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,596,094 - 107,655,778 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,550,870 - 107,610,554 (-)NCBIMGSCv36mm8
Celera11119,469,632 - 119,528,904 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.29NCBI
Cacng4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,183,410 - 93,245,470 (-)NCBIGRCr8
mRatBN7.21092,683,778 - 92,745,842 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,683,761 - 92,746,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,744,195 - 97,803,686 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,207,217 - 97,266,710 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,615,988 - 92,675,416 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01095,954,160 - 96,015,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1095,951,234 - 96,015,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,688,305 - 95,746,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,139,397 - 97,214,444 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,153,766 - 97,228,814 (-)NCBI
Celera1091,351,585 - 91,410,600 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,219,631 - 6,280,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,219,637 - 6,278,759 (+)NCBIChiLan1.0ChiLan1.0
CACNG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,993,902 - 83,062,365 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,813,199 - 87,882,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,900,645 - 60,969,659 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11766,159,571 - 66,176,442 (+)NCBIpanpan1.1PanPan1.1panPan2
CACNG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,449,465 - 13,464,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,449,450 - 13,462,645 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,344,165 - 14,404,358 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,112,749 - 15,172,995 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,112,694 - 15,173,656 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,060,134 - 14,120,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,413,810 - 13,473,970 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,415,469 - 13,475,483 (+)NCBIUU_Cfam_GSD_1.0
Cacng4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560213,107,963 - 13,143,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,053,391 - 6,059,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,051,021 - 6,062,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,391,079 - 13,452,174 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,391,080 - 13,454,542 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,761,277 - 13,824,577 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,413,981 - 54,482,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,413,965 - 54,482,561 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,452,813 - 25,522,456 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001033   ⟹   ENSHGLP00000000992
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248701,359,806 - 1,419,443 (-)Ensembl
RefSeq Acc Id: XM_004870260   ⟹   XP_004870317
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248701,359,937 - 1,419,458 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004870317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000992
  ENSHGLP00100037501
GenBank Protein JAO02989 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004870317   ⟸   XM_004870260
- UniProtKB: A0A0P6JI20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000992   ⟸   ENSHGLT00000001033


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000797 Ensembl, ENTREZGENE
  ENSHGLG00100038732 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001033 ENTREZGENE
  ENSHGLT00100057551 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g4su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
KEGG Report hgl:101714984 UniProtKB/TrEMBL
NCBI Gene Cacng4 ENTREZGENE
PANTHER PTHR12107:SF7 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA4 UniProtKB/TrEMBL
UniProt A0A0P6JI20 ENTREZGENE, UniProtKB/TrEMBL