| 1000 | 15039374 | Adip29_m | adiposity 29 (mouse) | | | | | 11 | 86608320 | 120608320 | Mouse | n/a | region | qtl |
| 1000 | 1301958 | Alcp18_m | alcohol preference locus 18 (mouse) | | | Not determined | | 11 | 95403965 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 1300944 | Alcp20_m | alcohol preference locus 20 (mouse) | | | Not determined | | 11 | 95403965 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 10044001 | Alcw8_m | alcohol withdrawal 8 (mouse) | | | Not determined | | 11 | 99254187 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 1558753 | Ath19_m | atherosclerosis 19 (mouse) | | | Not determined | | 11 | 91604608 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 1301983 | Berr2_m | berghei resistance locus 2 (mouse) | | | Not determined | | 11 | 98352609 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 15039376 | Bw42_m | body weight QTL 42 (mouse) | | | | | 11 | 86608320 | 120608320 | Mouse | n/a | region | qtl |
| 1000 | 10412288 | Carg4_m | Candida albicans resistance gene 4 (mouse) | | | Not determined | | 11 | 81810267 | 115810267 | Mouse | n/a | region | qtl |
| 1000 | 1300962 | Cd8mts4_m | CD8 memory T cell subset 4 (mouse) | | | Not determined | | 11 | 96137674 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 4141612 | Cia40_m | collagen induced arthritis 40 (mouse) | | | Not determined | | 11 | 103273992 | 115021444 | Mouse | n/a | region | qtl |
| 1000 | 1300649 | Crhq1_m | compensatory renal hypertrophy QTL 1 (mouse) | | | Not determined | | 11 | 81574481 | 115574636 | Mouse | n/a | region | qtl |
| 1000 | 4141465 | Dbm2_m | diabetes modifier 2 (mouse) | | | Not determined | | | 94437183 | 118022724 | Mouse | n/a | region | qtl |
| 1000 | 1301072 | Eae22_m | experimental allergic encephalomyelitis 22 (mouse) | | | Not determined | | 11 | 82377698 | 116377820 | Mouse | n/a | region | qtl |
| 1000 | 1301095 | El6_m | epilepsy 6 (mouse) | | | Not determined | | 11 | 93229183 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 11251723 | Ewc5_m | ethanol withdrawal and consumption 5 (mouse) | | | | | 11 | 89869251 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 27226789 | Feml16_m | femur length 16, 10 week (mouse) | | | | | 11 | 87490826 | 121873369 | Mouse | n/a | region | qtl |
| 1000 | 10044007 | Hbnr14_m | Heligmosomoides bakeri nematode resistance 14 (mouse) | | | Not determined | | 11 | 87502600 | 121502698 | Mouse | n/a | region | qtl |
| 1000 | 1301414 | Heal10_m | wound healing/regeneration 10 (mouse) | | | Not determined | | 11 | 77437183 | 111437322 | Mouse | n/a | region | qtl |
| 1000 | 10045616 | Heal25_m | wound healing/regeneration 25 (mouse) | | | Not determined | | 11 | 77437183 | 111437322 | Mouse | n/a | region | qtl |
| 1000 | 10045617 | Heal26_m | wound healing/regeneration 26 (mouse) | | | Not determined | | 11 | 92939373 | 112544554 | Mouse | n/a | region | qtl |
| 1000 | 4141702 | Hmtb6_m | hemostasis and thrombosis rebleeding time 6 (mouse) | | | Not determined | | | 107616344 | 110519830 | Mouse | n/a | region | qtl |
| 1000 | 4141367 | Inf1_m | acute ozone induced inflammation (mouse) | | | Not determined | | | 44630038 | 113058009 | Mouse | n/a | region | qtl |
| 1000 | 39128214 | Lwq20_m | liver weight QTL 20 (mouse) | | | | | 11 | 12268637 | 118022724 | Mouse | n/a | region | qtl |
| 1000 | 14747003 | Mancz9_m | mandible centroid size 9 (mouse) | | | | | 11 | 85844911 | 119844911 | Mouse | n/a | region | qtl |
| 1000 | 14746970 | Manh71_m | mandible shape 71 (mouse) | | | | | 11 | 79416257 | 113416257 | Mouse | n/a | region | qtl |
| 1000 | 10413882 | Moe1_m | modifier of epilepsy 1 (mouse) | | | | | 11 | 77770978 | 111771099 | Mouse | n/a | region | qtl |
| 1000 | 15014785 | Mvlq1_m | macrovesicular liver lesion QTL 1 (mouse) | | | | | 11 | 86608320 | 120608320 | Mouse | n/a | region | qtl |
| 1000 | 1301057 | Nidd4_m | non-insulin-dependent diabetes mellitus 4 (mouse) | | | Not determined | | 11 | 96810136 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 10043976 | Obq33_m | obesity QTL 33 (mouse) | | | Not determined | | 11 | 98500469 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 11038695 | Par8_m | pulmonary adenoma resistance 8 (mouse) | | | | | 11 | 77063779 | 111063918 | Mouse | n/a | region | qtl |
| 1000 | 1301535 | Pas5b_m | pulmonary adenoma susceptibility 5b (mouse) | | | Not determined | | 11 | 96176465 | 108806384 | Mouse | n/a | region | qtl |
| 1000 | 1300957 | Pbd1_m | peak bone density 1 (mouse) | | | Not determined | | 11 | 102344123 | 112384123 | Mouse | n/a | region | qtl |
| 1000 | 1302034 | Pkccl_m | protein kinase C content in lungs (mouse) | | | Not determined | | 11 | 91604608 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 14700693 | Ppiq12_m | prepulse inhibition QTL 12 (mouse) | | | | | 11 | 101504820 | 114472363 | Mouse | n/a | region | qtl |
| 1000 | 14700694 | Ppiq13_m | prepulse inhibition QTL 13 (mouse) | | | | | 11 | 101504820 | 114472363 | Mouse | n/a | region | qtl |
| 1000 | 14700695 | Ppiq14_m | prepulse inhibition QTL 14 (mouse) | | | | | 11 | 101504820 | 114472363 | Mouse | n/a | region | qtl |
| 1000 | 14700696 | Ppiq15_m | prepulse inhibition QTL 15 (mouse) | | | | | 11 | 101504820 | 114472363 | Mouse | n/a | region | qtl |
| 1000 | 4141939 | Pregq2_m | pregnancy QTL 2 (mouse) | | | Not determined | | 11 | 94063779 | 118022724 | Mouse | n/a | region | qtl |
| 1000 | 11341721 | Rvfs2_m | Rift Valley fever susceptibility 2 (mouse) | | | | | 11 | 100254186 | 120887165 | Mouse | n/a | region | qtl |
| 1000 | 1300766 | Skull16_m | skull morphology 16 (mouse) | | | Not determined | | 11 | 81574481 | 115574636 | Mouse | n/a | region | qtl |
| 1000 | 12910539 | Sstapa3_m | suseptibility to Staphylococcus aureus infection 3 (mouse) | | | | | 11 | 96897693 | 110603991 | Mouse | n/a | region | qtl |
| 1000 | 11553867 | Stmm5_m | skin tumor modifier of MSM 5 (mouse) | | | | | 11 | 100058103 | 121973369 | Mouse | n/a | region | qtl |
| 1000 | 27226730 | Tibmd1_m | tibia midshaft diameter 1, 5 week (mouse) | | | | | 11 | 62590826 | 109390826 | Mouse | n/a | region | qtl |
| 1000 | 27226731 | Tibmd4_m | tibia midshaft diameter 4, 10 week (mouse) | | | | | 11 | 94190826 | 118890826 | Mouse | n/a | region | qtl |
| 1000 | 4142121 | Tmc1m2_m | Tmc1 modifier 2 (mouse) | | | Not determined | | 11 | 56864027 | 114157957 | Mouse | n/a | region | qtl |
| 1000 | 1301012 | Vispl_m | visual placing (mouse) | | | Not determined | | 11 | 101022590 | 121973369 | Mouse | n/a | region | qtl |