Epha4 (Eph receptor A4) - Rat Genome Database

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Gene: Epha4 (Eph receptor A4) Mus musculus
Analyze
Symbol: Epha4
Name: Eph receptor A4
RGD ID: 1558389
MGI Page MGI
Description: Enables GPI-linked ephrin receptor activity; identical protein binding activity; and transmembrane-ephrin receptor activity. Involved in several processes, including axon development; cellular response to amyloid-beta; and regulation of neuron projection development. Acts upstream of or within several processes, including adult walking behavior; nephric duct morphogenesis; and nervous system development. Located in several cellular components, including axon; dendrite; and early endosome membrane. Is active in Schaffer collateral - CA1 synapse; glutamatergic synapse; and synaptic membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and sensory organ. Orthologous to human EPHA4 (EPH receptor A4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900005C20Rik; AI385584; Cek8; ephrin type-A receptor 4; Hek8; r; rabbit; rb; Se; Sek; Sek1; snoRNA MBII-267; Tyr; Tyro1; tyrosine-protein kinase receptor MPK-3; tyrosine-protein kinase receptor SEK-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39177,343,819 - 77,491,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl177,343,822 - 77,491,725 (-)EnsemblGRCm39 Ensembl
GRCm38177,367,182 - 77,515,107 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,367,185 - 77,515,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37177,363,760 - 77,511,663 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,250,333 - 77,398,236 (-)NCBIMGSCv36mm8
Celera177,858,813 - 78,000,449 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R)-adrenaline  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (EXP)
acrylamide  (EXP)
ADP  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzoic acid  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (EXP)
carbamazepine  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
chromium atom  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (EXP)
diethylstilbestrol  (ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
estrone  (ISO)
ethanol  (EXP)
fenvalerate  (ISO)
flusilazole  (EXP)
folic acid  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (ISO)
genistein  (EXP,ISO)
gentamycin  (ISO)
hexestrol  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
kojic acid  (ISO)
malathion  (ISO)
manganese(II) chloride  (ISO)
mestranol  (ISO)
methimazole  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
ponatinib  (ISO)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adherens junction organization  (IMP)
adult walking behavior  (IMP)
axon guidance  (IBA,IGI,IMP)
cell adhesion  (IEA)
cell surface receptor protein tyrosine kinase signaling pathway  (IEA)
cellular response to amyloid-beta  (IGI)
cochlea development  (IMP)
corticospinal tract morphogenesis  (IMP)
ephrin receptor signaling pathway  (IBA,ISO)
fasciculation of motor neuron axon  (IMP)
fasciculation of sensory neuron axon  (IMP)
glial cell migration  (ISO)
innervation  (IMP)
motor neuron axon guidance  (IMP)
negative regulation of axon regeneration  (IMP,ISO)
negative regulation of cell adhesion  (ISO)
negative regulation of cell migration  (ISO)
negative regulation of cellular response to hypoxia  (ISO)
negative regulation of epithelial to mesenchymal transition  (ISO)
negative regulation of ERK1 and ERK2 cascade  (ISO)
negative regulation of long-term synaptic potentiation  (IGI)
negative regulation of neuron apoptotic process  (IMP)
negative regulation of neuron projection development  (IDA)
negative regulation of proteolysis involved in protein catabolic process  (ISO)
nephric duct morphogenesis  (IGI)
nervous system development  (IEA)
neuron projection fasciculation  (IDA)
neuron projection guidance  (IDA)
positive regulation of amyloid-beta formation  (ISO)
positive regulation of cell adhesion  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of dendrite morphogenesis  (ISO)
protein stabilization  (ISO)
regulation of astrocyte differentiation  (IMP)
regulation of axonogenesis  (IMP)
regulation of dendritic spine morphogenesis  (IMP)
regulation of modification of synaptic structure  (IGI,ISO)
regulation of synapse pruning  (ISO)
synapse pruning  (EXP,IDA,IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Blocking EphA4 upregulation after spinal cord injury results in enhanced chronic pain. Cruz-Orengo L, etal., Exp Neurol. 2006 Dec;202(2):421-33. Epub 2006 Sep 7.
2. Reduction of EphA4 receptor expression after spinal cord injury does not induce axonal regeneration or return of tcMMEP response. Cruz-Orengo L, etal., Neurosci Lett. 2007 May 11;418(1):49-54. Epub 2007 Mar 12.
3. Regeneration-enhancing effects of EphA4 blocking peptide following corticospinal tract injury in adult rat spinal cord. Fabes J, etal., Eur J Neurosci. 2007 Nov;26(9):2496-505. Epub 2007 Oct 26.
4. Expression and Activation of EphA4 in the Human Brain After Traumatic Injury. Frugier T, etal., J Neuropathol Exp Neurol. 2012 Mar;71(3):242-50.
5. Axonal regeneration and lack of astrocytic gliosis in EphA4-deficient mice. Goldshmit Y, etal., J Neurosci. 2004 Nov 10;24(45):10064-73.
6. EphA4 blockers promote axonal regeneration and functional recovery following spinal cord injury in mice. Goldshmit Y, etal., PLoS One. 2011;6(9):e24636. Epub 2011 Sep 13.
7. EphA4 deficient mice maintain astroglial-fibrotic scar formation after spinal cord injury. Herrmann JE, etal., Exp Neurol. 2010 Jun;223(2):582-98. Epub 2010 Feb 17.
8. A family of mammalian Fringe genes implicated in boundary determination and the Notch pathway. Johnston SH, etal., Development 1997 Jun;124(11):2245-54.
9. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
10. MGDs mouse GO annotations MGD data from the GO Consortium
11. MGD IEA MGD IEA
12. Up-regulation of Eph tyrosine kinase receptors after excitotoxic injury in adult hippocampus. Moreno-Flores MT and Wandosell F, Neuroscience. 1999;91(1):193-201.
13. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
14. Attenuation of scratch-induced reactive astrogliosis by novel EphA4 kinase inhibitors. Parmentier-Batteur S, etal., J Neurochem. 2011 Sep;118(6):1016-31. doi: 10.1111/j.1471-4159.2011.07375.x. Epub 2011 Aug 16.
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. Mouse MP Annotation Import Pipeline RGD automated import pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Early changes in hippocampal Eph receptors precede the onset of memory decline in mouse models of Alzheimer's disease. Simon AM, etal., J Alzheimers Dis. 2009;17(4):773-86.
Additional References at PubMed
PMID:1281307   PMID:1295734   PMID:2466296   PMID:3291115   PMID:7522971   PMID:7609620   PMID:7628636   PMID:7947319   PMID:8224839   PMID:8346215   PMID:8407940   PMID:8455939  
PMID:8541222   PMID:8552593   PMID:8575627   PMID:8622893   PMID:8755474   PMID:8808709   PMID:8967950   PMID:8970821   PMID:9119409   PMID:9256343   PMID:9267020   PMID:9367425  
PMID:9425139   PMID:9490412   PMID:9618507   PMID:9789074   PMID:9806922   PMID:9876179   PMID:9883724   PMID:10230789   PMID:10330372   PMID:10349636   PMID:10495276   PMID:10523642  
PMID:10529420   PMID:10556054   PMID:10559410   PMID:10654602   PMID:10662633   PMID:10704386   PMID:10725232   PMID:10839360   PMID:10864957   PMID:10887087   PMID:10952903   PMID:11042159  
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PMID:11431694   PMID:11438928   PMID:11439183   PMID:11572780   PMID:11641270   PMID:11747084   PMID:11748138   PMID:11807023   PMID:11859196   PMID:11884616   PMID:11973278   PMID:11978390  
PMID:11978781   PMID:12124402   PMID:12217323   PMID:12383247   PMID:12421703   PMID:12466851   PMID:12477932   PMID:12496762   PMID:12514106   PMID:12520002   PMID:12528186   PMID:12577325  
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PMID:15848800   PMID:15939763   PMID:15996548   PMID:16020529   PMID:16102535   PMID:16141072   PMID:16141073   PMID:16172411   PMID:16221730   PMID:16364899   PMID:16421308   PMID:16446123  
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PMID:16902088   PMID:16919269   PMID:16943278   PMID:16958122   PMID:16977320   PMID:17030822   PMID:17035292   PMID:17039519   PMID:17143272   PMID:17145500   PMID:17304517   PMID:17306789  
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PMID:17967521   PMID:18028107   PMID:18094260   PMID:18157121   PMID:18268009   PMID:18287559   PMID:18377888   PMID:18403711   PMID:18410519   PMID:18422655   PMID:18495817   PMID:18524893  
PMID:18555774   PMID:18601903   PMID:18651661   PMID:18662335   PMID:18662545   PMID:18723684   PMID:18755772   PMID:18799693   PMID:18830404   PMID:18849530   PMID:18948148   PMID:19109910  
PMID:19168674   PMID:19182796   PMID:19201948   PMID:19210786   PMID:19217896   PMID:19247962   PMID:19289155   PMID:19334288   PMID:19403835   PMID:19520072   PMID:19542359   PMID:19571125  
PMID:19571816   PMID:19592509   PMID:19734893   PMID:19759535   PMID:19769959   PMID:19778584   PMID:19859539   PMID:19924828   PMID:20014408   PMID:20014422   PMID:20067584   PMID:20112066  
PMID:20202079   PMID:20223199   PMID:20308569   PMID:20335362   PMID:20473036   PMID:20631168   PMID:20696379   PMID:20826310   PMID:20886601   PMID:21029865   PMID:21109439   PMID:21147753  
PMID:21150899   PMID:21186356   PMID:21256124   PMID:21266507   PMID:21267068   PMID:21300867   PMID:21307096   PMID:21320481   PMID:21423180   PMID:21431469   PMID:21444754   PMID:21465626  
PMID:21491542   PMID:21542907   PMID:21559471   PMID:21628570   PMID:21673655   PMID:21753007   PMID:21791286   PMID:21799763   PMID:21873635   PMID:21899605   PMID:22036717   PMID:22121026  
PMID:22171039   PMID:22235033   PMID:22243746   PMID:22275477   PMID:22304922   PMID:22365545   PMID:22496566   PMID:22629434   PMID:22824304   PMID:22833130   PMID:22922411   PMID:22938696  
PMID:22967998   PMID:22985250   PMID:22999939   PMID:23144223   PMID:23352741   PMID:23385583   PMID:23390555   PMID:23418304   PMID:23487309   PMID:23578930   PMID:23578932   PMID:23637205  
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PMID:24623763   PMID:24658113   PMID:24700820   PMID:24719100   PMID:24949848   PMID:24952961   PMID:24958880   PMID:24998526   PMID:25041248   PMID:25073978   PMID:25139858   PMID:25264256  
PMID:25299585   PMID:25367067   PMID:25480914   PMID:25673830   PMID:25676701   PMID:25710467   PMID:25923646   PMID:25959774   PMID:25978062   PMID:26024354   PMID:26165136   PMID:26243870  
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PMID:27344203   PMID:27373307   PMID:27467069   PMID:27565439   PMID:27568519   PMID:27673329   PMID:27959424   PMID:28153688   PMID:28197551   PMID:28258169   PMID:28346224   PMID:28378742  
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PMID:33253166   PMID:33976355   PMID:34235739   PMID:34301831   PMID:34311762   PMID:34376651   PMID:34599305   PMID:34630039   PMID:34989046   PMID:35271507   PMID:35294885   PMID:35951416  
PMID:36028553   PMID:36334147   PMID:37524711   PMID:37551686   PMID:37610874   PMID:37796990   PMID:38187761   PMID:38345319   PMID:38429579  


Genomics

Comparative Map Data
Epha4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39177,343,819 - 77,491,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl177,343,822 - 77,491,725 (-)EnsemblGRCm39 Ensembl
GRCm38177,367,182 - 77,515,107 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,367,185 - 77,515,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv37177,363,760 - 77,511,663 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36177,250,333 - 77,398,236 (-)NCBIMGSCv36mm8
Celera177,858,813 - 78,000,449 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map139.55NCBI
EPHA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,418,027 - 221,574,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,418,027 - 221,574,202 (-)EnsemblGRCh38hg38GRCh38
GRCh372222,282,747 - 222,438,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362221,990,991 - 222,145,254 (-)NCBINCBI36Build 36hg18NCBI36
Build 342222,108,253 - 222,262,515NCBI
Celera2216,050,899 - 216,205,191 (-)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2214,137,116 - 214,291,409 (-)NCBIHuRef
CHM1_12222,288,287 - 222,442,879 (-)NCBICHM1_1
T2T-CHM13v2.02221,903,096 - 222,059,275 (-)NCBIT2T-CHM13v2.0
Epha4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8986,263,982 - 86,406,744 (-)NCBIGRCr8
mRatBN7.2978,815,460 - 78,958,139 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl978,815,460 - 78,958,139 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx987,245,229 - 87,387,938 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0992,374,666 - 92,517,486 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0990,760,851 - 90,903,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0983,111,222 - 83,253,486 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl983,111,222 - 83,253,458 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,880,599 - 83,022,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4976,676,778 - 76,820,752 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera976,344,796 - 76,487,530 (-)NCBICelera
Cytogenetic Map9q33NCBI
Epha4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545312,099,757 - 12,240,199 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545312,099,800 - 12,240,199 (+)NCBIChiLan1.0ChiLan1.0
EPHA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213124,035,467 - 124,192,876 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B124,050,435 - 124,207,734 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B108,664,475 - 108,818,802 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B227,246,593 - 227,402,791 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B227,248,958 - 227,402,790 (-)Ensemblpanpan1.1panPan2
EPHA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13727,670,143 - 27,809,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3727,677,566 - 27,809,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3728,506,808 - 28,649,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03727,690,393 - 27,834,663 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3727,697,197 - 27,834,652 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13727,600,660 - 27,743,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03727,535,209 - 27,678,026 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03727,555,060 - 27,698,047 (-)NCBIUU_Cfam_GSD_1.0
Epha4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303177,190,052 - 177,327,435 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365693,540,053 - 3,670,348 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365693,539,269 - 3,670,322 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15123,352,816 - 123,503,126 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115123,350,867 - 123,501,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215136,746,506 - 136,804,962 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.215136,931,366 - 136,936,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPHA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110107,344,442 - 107,501,375 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10107,352,530 - 107,499,788 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604091,884,095 - 92,041,139 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epha4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248233,555,288 - 3,698,990 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248233,555,273 - 3,697,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epha4
4485 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1390
Count of miRNA genes:627
Interacting mature miRNAs:830
Transcripts:ENSMUST00000027451
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse

Markers in Region
AI385584  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38177,374,788 - 77,374,883UniSTSGRCm38
MGSCv37177,371,363 - 77,371,458UniSTSGRCm37
Celera177,866,398 - 77,866,493UniSTS
Cytogenetic Map1C1-C5UniSTS
Whitehead/MRC_RH11137.43UniSTS
Epha4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv374136,485,424 - 136,485,543UniSTSGRCm37
Celera4135,136,936 - 135,137,055UniSTS
Cytogenetic Map1C1-C5UniSTS
cM Map143.0UniSTS
cM Map4 UniSTS
D1Mit332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38177,403,501 - 77,403,621UniSTSGRCm38
MGSCv37177,400,076 - 77,400,196UniSTSGRCm37
Cytogenetic Map1C1-C5UniSTS
cM Map143.1UniSTS
Whitehead Genetic143.7UniSTS
Whitehead/MRC_RH11137.43UniSTS
Whitehead_YAC1 UniSTS
UniSTS:234159  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38177,368,467 - 77,368,739UniSTSGRCm38
MGSCv37177,365,042 - 77,365,314UniSTSGRCm37
Celera177,860,100 - 77,860,372UniSTS
Cytogenetic Map1C1-C5UniSTS
X65138  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C1-C5UniSTS
Whitehead/MRC_RH11134.49UniSTS
PMC23772P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38177,506,565 - 77,507,207UniSTSGRCm38
MGSCv37177,503,140 - 77,503,782UniSTSGRCm37
Celera177,991,916 - 77,992,558UniSTS
Cytogenetic Map1C1-C5UniSTS
Epha4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C1-C5UniSTS
Epha4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C1-C5UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027451   ⟹   ENSMUSP00000027451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,343,822 - 77,491,725 (-)Ensembl
GRCm38.p6 Ensembl177,367,185 - 77,515,088 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186930   ⟹   ENSMUSP00000140370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,377,860 - 77,491,720 (-)Ensembl
GRCm38.p6 Ensembl177,401,223 - 77,515,083 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187346   ⟹   ENSMUSP00000140631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,350,250 - 77,354,244 (-)Ensembl
GRCm38.p6 Ensembl177,373,613 - 77,377,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188797   ⟹   ENSMUSP00000140954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,349,776 - 77,491,725 (-)Ensembl
GRCm38.p6 Ensembl177,373,139 - 77,515,088 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188952   ⟹   ENSMUSP00000139640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,343,826 - 77,491,716 (-)Ensembl
GRCm38.p6 Ensembl177,367,189 - 77,515,079 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,373,434 - 77,491,722 (-)Ensembl
GRCm38.p6 Ensembl177,396,797 - 77,515,085 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190149   ⟹   ENSMUSP00000140408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,350,268 - 77,491,716 (-)Ensembl
GRCm38.p6 Ensembl177,373,631 - 77,515,079 (-)Ensembl
RefSeq Acc Id: NM_007936   ⟹   NP_031962
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39177,343,822 - 77,491,725 (-)NCBI
GRCm38177,367,185 - 77,515,088 (-)NCBI
MGSCv37177,363,760 - 77,511,663 (-)RGD
Celera177,858,813 - 78,000,449 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496407   ⟹   XP_006496470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39177,343,819 - 77,491,763 (-)NCBI
GRCm38177,367,182 - 77,515,107 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496408   ⟹   XP_006496471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39177,343,819 - 77,491,738 (-)NCBI
GRCm38177,367,182 - 77,515,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159344   ⟹   XP_036015237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39177,343,819 - 77,491,738 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031962   ⟸   NM_007936
- Peptide Label: precursor
- UniProtKB: Q80VZ2 (UniProtKB/Swiss-Prot),   Q03137 (UniProtKB/Swiss-Prot),   Q99KA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496470   ⟸   XM_006496407
- Peptide Label: isoform X1
- UniProtKB: Q99KA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496471   ⟸   XM_006496408
- Peptide Label: isoform X2
- UniProtKB: Q99KA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027451   ⟸   ENSMUST00000027451
RefSeq Acc Id: ENSMUSP00000140370   ⟸   ENSMUST00000186930
RefSeq Acc Id: ENSMUSP00000140408   ⟸   ENSMUST00000190149
RefSeq Acc Id: ENSMUSP00000140954   ⟸   ENSMUST00000188797
RefSeq Acc Id: ENSMUSP00000139640   ⟸   ENSMUST00000188952
RefSeq Acc Id: ENSMUSP00000140631   ⟸   ENSMUST00000187346
RefSeq Acc Id: XP_036015237   ⟸   XM_036159344
- Peptide Label: isoform X3
- UniProtKB: Q99KA8 (UniProtKB/TrEMBL)
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q03137-F1-model_v2 AlphaFold Q03137 1-986 view protein structure

Promoters
RGD ID:6817781
Promoter ID:MM_KWN:1269
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000113540,   NM_007936,   UC007BQA.1,   XM_001472811_GM2162
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36177,510,681 - 77,512,982 (+)MPROMDB
RGD ID:6874184
Promoter ID:EPDNEW_M543
Type:multiple initiation site
Name:Epha4_1
Description:Mus musculus Eph receptor A4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38177,515,087 - 77,515,147EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98277 AgrOrtholog
Ensembl Genes ENSMUSG00000026235 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027451 ENTREZGENE
  ENSMUST00000027451.13 UniProtKB/Swiss-Prot
  ENSMUST00000186930.2 UniProtKB/TrEMBL
  ENSMUST00000187346.2 UniProtKB/TrEMBL
  ENSMUST00000188797.7 UniProtKB/Swiss-Prot
  ENSMUST00000188952.7 UniProtKB/Swiss-Prot
  ENSMUST00000190149.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Eph_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EphA4_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EphA4_SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13838 UniProtKB/Swiss-Prot
MGD MGI:98277 ENTREZGENE
NCBI Gene 13838 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EPHRIN TYPE-A RECEPTOR 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epha4 PhenoGen
PIRSF TyrPK_ephrin_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WQW6_MOUSE UniProtKB/TrEMBL
  A0A087WQZ6_MOUSE UniProtKB/TrEMBL
  A0A087WRH4_MOUSE UniProtKB/TrEMBL
  EPHA4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V1W9_MOUSE UniProtKB/TrEMBL
  Q80VZ2 ENTREZGENE
  Q99KA8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q80VZ2 UniProtKB/Swiss-Prot