Dctn6 (dynactin 6) - Rat Genome Database

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Gene: Dctn6 (dynactin 6) Mus musculus
Analyze
Symbol: Dctn6
Name: dynactin 6
RGD ID: 1316809
MGI Page MGI
Description: Enables dynein complex binding activity. Acts upstream of or within mitotic spindle organization. Part of dynactin complex. Is expressed in embryo; extraembryonic component; oocyte; primitive endoderm; and yolk sac. Orthologous to human DCTN6 (dynactin subunit 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU044699; dynactin subunit 6; dynactin subunit p27; p2; p27; p27 dynactin subunit; RGD containing protein; WS-; WS-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)EnsemblGRCm39 Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBIMGSCv36mm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Analysis of dynactin subcomplexes reveals a novel actin-related protein associated with the arp1 minifilament pointed end. Eckley DM, etal., J Cell Biol 1999 Oct 18;147(2):307-20.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Dynactin. Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79.
Additional References at PubMed
PMID:8889548   PMID:10318868   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11752298   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21873635   PMID:23455152   PMID:32325033   PMID:34371284  


Genomics

Comparative Map Data
Dctn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)EnsemblGRCm39 Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBIMGSCv36mm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
DCTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,156,369 - 30,183,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,156,319 - 30,183,639 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,013,885 - 30,041,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,133,355 - 30,160,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34830,133,354 - 30,160,601NCBI
Celera828,973,101 - 29,000,347 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,558,549 - 28,585,889 (+)NCBIHuRef
CHM1_1830,216,121 - 30,243,455 (+)NCBICHM1_1
T2T-CHM13v2.0830,435,240 - 30,462,514 (+)NCBIT2T-CHM13v2.0
Dctn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,780,759 - 64,799,766 (+)NCBIGRCr8
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,417,996 - 63,437,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,831,653 - 66,850,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,052,263 - 62,071,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
Dctn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,631,654 - 6,645,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,612,124 - 6,645,962 (+)NCBIChiLan1.0ChiLan1.0
DCTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,717,653 - 48,743,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,433,092 - 24,458,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,457,426 - 29,485,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,647,765 - 26,672,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,647,944 - 26,673,455 (+)Ensemblpanpan1.1panPan2
DCTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,119,908 - 34,144,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,120,046 - 34,144,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,582,465 - 34,607,208 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01636,149,841 - 36,174,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,149,988 - 36,175,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11634,248,295 - 34,273,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,817,304 - 34,841,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,938,291 - 34,962,353 (-)NCBIUU_Cfam_GSD_1.0
Dctn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494357,274,146 - 57,293,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493679269,125 - 90,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493679269,893 - 89,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,258,470 - 28,286,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,258,480 - 28,325,782 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,822,568 - 13,849,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dctn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dctn6
735 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1169
Count of miRNA genes:544
Interacting mature miRNAs:624
Transcripts:ENSMUST00000033913, ENSMUST00000117243, ENSMUST00000118811, ENSMUST00000123113, ENSMUST00000131839, ENSMUST00000142661, ENSMUST00000143411, ENSMUST00000152422, ENSMUST00000153537, ENSMUST00000155296
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226756Femd2_mfemur midshaft diameter 2, 5 week (mouse)8495000035067154Mouse
1301532Scc8_mcolon tumor susceptibility 8 (mouse)Not determined8721249935110107Mouse
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8798418941984342Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8810320142103372Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8810320142103372Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8810320142103372Mouse
11532713Sluc42_msusceptibility to lung cancer 42 (mouse)81344721035321225Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81550657249506729Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81550657249506729Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81656937350569697Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81832109752321225Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81945501853455150Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81945501853455150Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82658332260583322Mouse
13524525Bodwtq7_mbody wweight QTL 7 (mouse)82824955647027681Mouse
1302173Vent1_mventricular size 1 (mouse)Not determined83183168634743564Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
13801029Gripgtt2_mglucose response to intraperitoneal glucose tolerance test 2, females only (mouse)83251002834987154Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83327701651290537Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83429039768290537Mouse

Markers in Region
D19214  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38834,090,584 - 34,090,746UniSTSGRCm38
MGSCv37835,153,638 - 35,153,800UniSTSGRCm37
Celera836,706,500 - 36,706,662UniSTS
Cytogenetic Map8A4UniSTS
Whitehead_YAC8 UniSTS
AU044699  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38834,090,643 - 34,090,795UniSTSGRCm38
MGSCv37835,153,697 - 35,153,849UniSTSGRCm37
Celera836,706,559 - 36,706,712UniSTS
Cytogenetic Map8A4UniSTS
Whitehead/MRC_RH8381.6UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001293757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC167537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF124788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF190796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU756370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY079663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA573939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA579919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV560309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV042569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV062065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033913   ⟹   ENSMUSP00000033913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,577 - 34,575,950 (-)Ensembl
GRCm38.p6 Ensembl834,090,423 - 34,108,796 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117243   ⟹   ENSMUSP00000113716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,717 - 34,575,690 (-)Ensembl
GRCm38.p6 Ensembl834,090,563 - 34,108,536 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118811   ⟹   ENSMUSP00000113280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,792 - 34,575,006 (-)Ensembl
GRCm38.p6 Ensembl834,090,638 - 34,107,852 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,761 - 34,560,079 (-)Ensembl
GRCm38.p6 Ensembl834,090,607 - 34,092,925 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,732 - 34,574,968 (-)Ensembl
GRCm38.p6 Ensembl834,090,578 - 34,107,814 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,559,665 - 34,564,845 (-)Ensembl
GRCm38.p6 Ensembl834,092,511 - 34,097,691 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143411   ⟹   ENSMUSP00000117109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,562,066 - 34,575,617 (-)Ensembl
GRCm38.p6 Ensembl834,094,912 - 34,108,463 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152422   ⟹   ENSMUSP00000120022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,750 - 34,573,528 (-)Ensembl
GRCm38.p6 Ensembl834,090,596 - 34,106,374 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,561,856 - 34,575,631 (-)Ensembl
GRCm38.p6 Ensembl834,094,702 - 34,108,477 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl834,557,574 - 34,562,192 (-)Ensembl
GRCm38.p6 Ensembl834,090,420 - 34,095,038 (-)Ensembl
RefSeq Acc Id: NM_001293757   ⟹   NP_001280686
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,575,866 (-)NCBI
GRCm38834,090,420 - 34,108,712 (-)NCBI
Celera836,706,336 - 36,727,130 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293758   ⟹   NP_001280687
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,574,968 (-)NCBI
GRCm38834,090,420 - 34,107,814 (-)NCBI
Celera836,706,336 - 36,727,130 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001293759   ⟹   NP_001280688
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,575,866 (-)NCBI
GRCm38834,090,420 - 34,108,712 (-)NCBI
Celera836,706,336 - 36,727,130 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011722   ⟹   NP_035852
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,575,866 (-)NCBI
GRCm38834,090,420 - 34,108,712 (-)NCBI
MGSCv37835,153,477 - 35,171,565 (-)RGD
Celera836,706,336 - 36,727,130 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509094   ⟹   XP_006509157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,575,690 (-)NCBI
GRCm38834,090,420 - 34,108,536 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243416   ⟹   XP_030099276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,575,625 (-)NCBI
GRCm38834,090,420 - 34,108,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243417   ⟹   XP_030099277
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,566,028 (-)NCBI
GRCm38834,090,420 - 34,098,876 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153881   ⟹   XP_036009774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,574,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153882   ⟹   XP_036009775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39834,557,574 - 34,574,813 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035852   ⟸   NM_011722
- Peptide Label: isoform 2
- UniProtKB: Q8C2M9 (UniProtKB/Swiss-Prot),   Q9QZB8 (UniProtKB/Swiss-Prot),   Q9WUB4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509157   ⟸   XM_006509094
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001280688   ⟸   NM_001293759
- Peptide Label: isoform 4
- UniProtKB: Q9WUB4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001280686   ⟸   NM_001293757
- Peptide Label: isoform 1
- UniProtKB: D3Z4E5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280687   ⟸   NM_001293758
- Peptide Label: isoform 3
- UniProtKB: D3Z6H3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099276   ⟸   XM_030243416
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030099277   ⟸   XM_030243417
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000117109   ⟸   ENSMUST00000143411
RefSeq Acc Id: ENSMUSP00000113280   ⟸   ENSMUST00000118811
RefSeq Acc Id: ENSMUSP00000120022   ⟸   ENSMUST00000152422
RefSeq Acc Id: ENSMUSP00000033913   ⟸   ENSMUST00000033913
RefSeq Acc Id: ENSMUSP00000113716   ⟸   ENSMUST00000117243
RefSeq Acc Id: XP_036009775   ⟸   XM_036153882
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036009774   ⟸   XM_036153881
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUB4-F1-model_v2 AlphaFold Q9WUB4 1-190 view protein structure

Promoters
RGD ID:8666867
Promoter ID:EPDNEW_M11464
Type:multiple initiation site
Name:Dctn6_2
Description:Mus musculus dynactin 6 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11466  EPDNEW_M11465  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38834,107,829 - 34,107,889EPDNEW
RGD ID:8666871
Promoter ID:EPDNEW_M11465
Type:initiation region
Name:Dctn6_1
Description:Mus musculus dynactin 6 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11464  EPDNEW_M11466  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38834,108,458 - 34,108,518EPDNEW
RGD ID:8666869
Promoter ID:EPDNEW_M11466
Type:initiation region
Name:Dctn6_3
Description:Mus musculus dynactin 6 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11464  EPDNEW_M11465  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38834,108,796 - 34,108,856EPDNEW
RGD ID:6843003
Promoter ID:MM_KWN:54134
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000077526
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36835,156,451 - 35,156,951 (-)MPROMDB
RGD ID:6843004
Promoter ID:MM_KWN:54136
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000077527
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36835,160,251 - 35,160,751 (-)MPROMDB
RGD ID:6843002
Promoter ID:MM_KWN:54138
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000118811,   OTTMUST00000077523
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36835,170,561 - 35,171,742 (-)MPROMDB
RGD ID:6843005
Promoter ID:MM_KWN:54139
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung
Transcripts:ENSMUST00000117243,   OTTMUST00000077519,   OTTMUST00000077520,   UC009LKO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36835,171,299 - 35,171,799 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1343154 AgrOrtholog
Ensembl Genes ENSMUSG00000031516 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033913 ENTREZGENE
  ENSMUST00000033913.11 UniProtKB/Swiss-Prot
  ENSMUST00000117243 ENTREZGENE
  ENSMUST00000117243.8 UniProtKB/TrEMBL
  ENSMUST00000118811 ENTREZGENE
  ENSMUST00000118811.8 UniProtKB/TrEMBL
  ENSMUST00000143411.2 UniProtKB/TrEMBL
  ENSMUST00000152422.8 UniProtKB/TrEMBL
Gene3D-CATH Hexapeptide repeat proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DCTN6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trimer_LpxA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22428 UniProtKB/Swiss-Prot
MGD MGI:1343154 ENTREZGENE
NCBI Gene 22428 ENTREZGENE
PANTHER DYNACTIN SUBUNIT 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13072 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dctn6 PhenoGen
Superfamily-SCOP SSF51161 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z4E5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z6A1_MOUSE UniProtKB/TrEMBL
  D3Z6H3 ENTREZGENE, UniProtKB/TrEMBL
  DCTN6_MOUSE UniProtKB/Swiss-Prot
  F6XWI6_MOUSE UniProtKB/TrEMBL
  Q8C2M9 ENTREZGENE
  Q9QZB8 ENTREZGENE
  Q9WUB4 ENTREZGENE
UniProt Secondary Q8C2M9 UniProtKB/Swiss-Prot
  Q9QZB8 UniProtKB/Swiss-Prot