Dctn6 (dynactin subunit 6) - Rat Genome Database

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Gene: Dctn6 (dynactin subunit 6) Heterocephalus glaber
Analyze
Symbol: Dctn6
Name: dynactin subunit 6
RGD ID: 18934567
Description: ENCODES a protein that exhibits dynein complex binding (inferred); INVOLVED IN mitotic spindle organization (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dctn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DCTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,156,369 - 30,183,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,156,319 - 30,183,639 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,013,885 - 30,041,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,133,355 - 30,160,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34830,133,354 - 30,160,601NCBI
Celera828,973,101 - 29,000,347 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,558,549 - 28,585,889 (+)NCBIHuRef
CHM1_1830,216,121 - 30,243,455 (+)NCBICHM1_1
T2T-CHM13v2.0830,435,240 - 30,462,514 (+)NCBIT2T-CHM13v2.0
Dctn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)EnsemblGRCm39 Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBIMGSCv36mm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
Dctn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,780,759 - 64,799,766 (+)NCBIGRCr8
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,417,996 - 63,437,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,831,653 - 66,850,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,052,263 - 62,071,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
Dctn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,631,654 - 6,645,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,612,124 - 6,645,962 (+)NCBIChiLan1.0ChiLan1.0
DCTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,717,653 - 48,743,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,433,092 - 24,458,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,457,426 - 29,485,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,647,765 - 26,672,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,647,944 - 26,673,455 (+)Ensemblpanpan1.1panPan2
DCTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,119,908 - 34,144,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,120,046 - 34,144,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,582,465 - 34,607,208 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01636,149,841 - 36,174,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,149,988 - 36,175,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11634,248,295 - 34,273,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,817,304 - 34,841,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,938,291 - 34,962,353 (-)NCBIUU_Cfam_GSD_1.0
Dctn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494357,274,146 - 57,293,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493679269,125 - 90,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493679269,893 - 89,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,258,470 - 28,286,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,258,480 - 28,325,782 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,822,568 - 13,849,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002192   ⟹   ENSHGLP00000002144
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000002193   ⟹   ENSHGLP00000002145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248396,797,138 - 6,818,222 (+)Ensembl
RefSeq Acc Id: XM_004867655   ⟹   XP_004867712
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004867712 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002144
  ENSHGLP00100057575
Reference Protein Sequences
RefSeq Acc Id: XP_004867712   ⟸   XM_004867655
- UniProtKB: A0A0P6JAI0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002145   ⟸   ENSHGLT00000002193
RefSeq Acc Id: ENSHGLP00000002144   ⟸   ENSHGLT00000002192


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001627 Ensembl, ENTREZGENE
  ENSHGLG00100008953 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002192 ENTREZGENE
  ENSHGLT00100081520 UniProtKB/TrEMBL
Gene3D-CATH Hexapeptide repeat proteins UniProtKB/TrEMBL
InterPro DCTN6 UniProtKB/TrEMBL
  Trimer_LpxA-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101721818 UniProtKB/TrEMBL
NCBI Gene Dctn6 ENTREZGENE
PANTHER DYNACTIN SUBUNIT 6 UniProtKB/TrEMBL
  PTHR13072 UniProtKB/TrEMBL
Superfamily-SCOP SSF51161 UniProtKB/TrEMBL
UniProt A0A0P6JAI0 ENTREZGENE, UniProtKB/TrEMBL