DCTN6 (dynactin subunit 6) - Rat Genome Database

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Gene: DCTN6 (dynactin subunit 6) Sus scrofa
Analyze
Symbol: DCTN6
Name: dynactin subunit 6
RGD ID: 14255826
Description: ENCODES a protein that exhibits dynein complex binding (inferred); INVOLVED IN mitotic spindle organization (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN centrosome (inferred); chromosome (inferred); chromosome, centromeric region (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: dynactin 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:30032202   PMID:31597779  


Genomics

Comparative Map Data
DCTN6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCTN6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,156,369 - 30,183,639 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,156,319 - 30,183,639 (+)EnsemblGRCh38hg38GRCh38
GRCh37830,013,885 - 30,041,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,133,355 - 30,160,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 34830,133,354 - 30,160,601NCBI
Celera828,973,101 - 29,000,347 (+)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,558,549 - 28,585,889 (+)NCBIHuRef
CHM1_1830,216,121 - 30,243,455 (+)NCBICHM1_1
T2T-CHM13v2.0830,435,240 - 30,462,514 (+)NCBIT2T-CHM13v2.0
Dctn6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,557,574 - 34,575,866 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,557,574 - 34,575,950 (-)EnsemblGRCm39 Ensembl
GRCm38834,090,420 - 34,108,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,090,420 - 34,108,796 (-)EnsemblGRCm38mm10GRCm38
MGSCv37835,153,477 - 35,171,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,558,941 - 35,576,960 (-)NCBIMGSCv36mm8
Celera836,706,339 - 36,726,929 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
Dctn6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,780,759 - 64,799,766 (+)NCBIGRCr8
mRatBN7.21658,077,595 - 58,096,604 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,077,585 - 58,096,968 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,417,996 - 63,437,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,831,653 - 66,850,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,052,263 - 62,071,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,795,544 - 61,814,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,795,432 - 61,814,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,461,253 - 61,480,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,805,057 - 61,824,399 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,805,185 - 61,824,467 (+)NCBI
Celera1656,115,632 - 56,134,228 (+)NCBICelera
Cytogenetic Map16q12.2NCBI
Dctn6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,631,654 - 6,645,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554636,612,124 - 6,645,962 (+)NCBIChiLan1.0ChiLan1.0
DCTN6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,717,653 - 48,743,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,433,092 - 24,458,676 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,457,426 - 29,485,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,647,765 - 26,672,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,647,944 - 26,673,455 (+)Ensemblpanpan1.1panPan2
DCTN6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,119,908 - 34,144,689 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,120,046 - 34,144,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1634,582,465 - 34,607,208 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01636,149,841 - 36,174,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,149,988 - 36,175,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11634,248,295 - 34,273,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,817,304 - 34,841,846 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,938,291 - 34,962,353 (-)NCBIUU_Cfam_GSD_1.0
Dctn6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494357,274,146 - 57,293,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493679269,125 - 90,110 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493679269,893 - 89,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCTN6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,258,470 - 28,286,654 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,258,480 - 28,325,782 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,822,568 - 13,849,605 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dctn6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,782,341 - 6,818,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248396,782,284 - 6,818,584 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DCTN6
360 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 3 1 20 1
Low 8 4 4 2 3 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000050716   ⟹   ENSSSCP00000039236
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1554,875,850 - 54,896,148 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000093713   ⟹   ENSSSCP00000075459
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1554,877,299 - 54,896,148 (-)Ensembl
RefSeq Acc Id: NM_001167644   ⟹   NP_001161116
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11554,876,213 - 54,895,883 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001161116   ⟸   NM_001167644
- UniProtKB: D0G6S1 (UniProtKB/TrEMBL),   A0A4X1VN73 (UniProtKB/TrEMBL),   A0A4X1VTR0 (UniProtKB/TrEMBL),   A0A8D1AJH3 (UniProtKB/TrEMBL),   A0A8D1R3T2 (UniProtKB/TrEMBL),   A0A8D0Y950 (UniProtKB/TrEMBL),   A0A8D1VFB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039236   ⟸   ENSSSCT00000050716
RefSeq Acc Id: ENSSSCP00000075459   ⟸   ENSSSCT00000093713


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038895 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005041798 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015072413 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025057660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030074109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035055122 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040042559 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045001629 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050004006 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055019277 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060040289 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065040295 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070026519 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000050716 ENTREZGENE
  ENSSSCT00000050716.3 UniProtKB/Swiss-Prot
  ENSSSCT00000093713.1 UniProtKB/TrEMBL
  ENSSSCT00005067224.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00005067262.1 UniProtKB/TrEMBL
  ENSSSCT00015097587.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00015097674.1 UniProtKB/TrEMBL
  ENSSSCT00025079008.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00025079130.1 UniProtKB/TrEMBL
  ENSSSCT00030103909.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00030103919.1 UniProtKB/TrEMBL
  ENSSSCT00035073524.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00035073533.1 UniProtKB/TrEMBL
  ENSSSCT00040056977.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00040057079.1 UniProtKB/TrEMBL
  ENSSSCT00045002605.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00045002612.1 UniProtKB/TrEMBL
  ENSSSCT00050005445.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00050005448.1 UniProtKB/TrEMBL
  ENSSSCT00055037792.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00055037864.1 UniProtKB/TrEMBL
  ENSSSCT00060054560.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00060054573.1 UniProtKB/TrEMBL
  ENSSSCT00065055117.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00065055122.1 UniProtKB/TrEMBL
  ENSSSCT00070053145.1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCT00070053146.1 UniProtKB/TrEMBL
Gene3D-CATH Hexapeptide repeat proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DCTN6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trimer_LpxA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100312966 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene DCTN6 ENTREZGENE
PANTHER DYNACTIN 6 UniProtKB/Swiss-Prot
  DYNACTIN SUBUNIT 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13072 UniProtKB/TrEMBL
Superfamily-SCOP SSF51161 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A4X1VN73 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VTR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y950 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AJH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1R3T2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VFB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7Y9_PIG UniProtKB/TrEMBL
  D0G6S1 ENTREZGENE, UniProtKB/Swiss-Prot
VGNC ID VGNC:95826 ENTREZGENE