ACTB (actin beta) - Rat Genome Database

Name: ACTB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ACTB (actin beta) Canis lupus familiaris

Analyze

Symbol:

ACTB

Name:

actin beta

RGD ID:

12261807

Description:

ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); kinesin binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); apical protein localization (ortholog); axonogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; INO80 family mediated chromatin remodeling pathway; mitochondria transport pathway; ASSOCIATED WITH Aminoacylase 1 Deficiency (ortholog); Animal Mammary Neoplasms (ortholog); Baraitser-Winter syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); apical junction complex (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

actin, cytoplasmic 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACTB (actin beta)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Actb (actin, beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Actb (actin, beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Actb (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACTB (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Actb (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACTB (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ACTB (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Actb (actin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	12,421,006 - 12,424,449 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	12,418,932 - 12,462,845 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	13,893,047 - 13,896,436 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	12,557,673 - 12,561,075 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	12,557,667 - 12,561,086 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	12,367,765 - 12,371,152 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	12,301,595 - 12,304,986 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	12,578,988 - 12,582,384 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aminoacylase 1 Deficiency (ISO)

Animal Mammary Neoplasms (ISO)

Baraitser-Winter syndrome (ISO)

Baraitser-Winter syndrome 1 (ISO)

Becker Nevus Syndrome (ISO)

carcinoma (ISO)

Chemical and Drug Induced Liver Injury (ISO)

coloboma (ISO)

CONGENITAL SMOOTH MUSCLE HAMARTOMA, WITH OR WITHOUT HEMIHYPERTROPHY (ISO)

Craniofacial Abnormalities (ISO)

Dwarfism (ISO)

dysostosis (ISO)

dystonia (ISO)

Esophageal Neoplasms (ISO)

Experimental Mammary Neoplasms (ISO)

Febrile Seizures (ISO)

genetic disease (ISO)

hand, foot and mouth disease (ISO)

hepatocellular carcinoma (ISO)

Hypoxia (ISO)

intellectual disability (ISO)

Juvenile-Onset Dystonia (ISO)

Lung Neoplasms (ISO)

metabolic dysfunction-associated steatotic liver disease (ISO)

Myocardial Ischemia (ISO)

Neoplasm Invasiveness (ISO)

Nervous System Malformations (ISO)

Neurodevelopmental Disorders (ISO)

osteoarthritis (ISO)

sensorineural hearing loss (ISO)

smooth muscle hamartoma (ISO)

temporal lobe epilepsy (ISO)

thrombocytopenia (ISO)

Thrombocytopenia 8 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction assembly (ISO)

apical protein localization (ISO)

axonogenesis (IBA,ISO)

cell motility (IBA)

cellular response to cytochalasin B (ISO)

cellular response to electrical stimulus (ISO)

circadian rhythm (ISO)

establishment or maintenance of cell polarity (ISO)

morphogenesis of a polarized epithelium (ISO)

platelet aggregation (ISO)

positive regulation of double-strand break repair via homologous recombination (ISO)

postsynaptic actin cytoskeleton organization (IEA)

protein localization to adherens junction (ISO)

regulation of cell cycle (ISO)

regulation of norepinephrine uptake (ISO)

regulation of protein localization to plasma membrane (ISO)

regulation of synaptic vesicle endocytosis (ISO)

regulation of transepithelial transport (ISO)

response to immobilization stress (ISO)

response to mechanical stimulus (ISO)

retina development in camera-type eye (ISO)

substantia nigra development (ISO)

Cellular Component

actin cytoskeleton (ISS)

actin filament (IBA)

adherens junction (ISO)

apical junction complex (ISO)

axon (IBA,ISO)

brush border (ISO)

calyx of Held (ISO)

cell-cell junction (ISO)

cortical cytoskeleton (ISO)

cytoplasm (IBA,IEA)

cytoplasmic ribonucleoprotein granule (ISO)

cytoskeleton (IEA,ISS)

cytosol (ISO)

dense body (ISS)

focal adhesion (ISS)

glutamatergic synapse (ISO)

lamellipodium (ISO)

membrane (IBA,IEA)

membrane raft (ISO)

NuA4 histone acetyltransferase complex (IBA,ISO)

nucleosome (ISO)

nucleus (IEA,ISS)

plasma membrane (ISS)

podosome (ISO)

postsynaptic actin cytoskeleton (ISO)

protein-containing complex (ISO,ISS)

ribonucleoprotein complex (ISO)

Schaffer collateral - CA1 synapse (ISO)

stress fiber (ISO)

synapse (IBA)

tight junction (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (ISO)

hydrolase activity (IEA)

identical protein binding (ISO)

kinesin binding (ISO)

nitric-oxide synthase binding (ISO)

protein binding (ISO)

protein kinase binding (IBA,ISO)

structural constituent of postsynaptic actin cytoskeleton (IBA)

Tat protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

INO80 family mediated chromatin remodeling pathway (ISO)

mitochondria transport pathway (ISO)

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:8855304	PMID:15834686	PMID:35373395

Genomics

Comparative Map Data

ACTB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	12,421,006 - 12,424,449 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	12,418,932 - 12,462,845 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	13,893,047 - 13,896,436 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	12,557,673 - 12,561,075 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	12,557,667 - 12,561,086 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	12,367,765 - 12,371,152 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	12,301,595 - 12,304,986 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	12,578,988 - 12,582,384 (+)	NCBI		UU_Cfam_GSD_1.0

ACTB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	5,527,148 - 5,530,601 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	5,526,409 - 5,563,902 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	5,566,779 - 5,570,232 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	5,533,312 - 5,536,747 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	5,340,026 - 5,343,462	NCBI
Celera	7	5,526,560 - 5,530,009 (-)	NCBI		Celera
Cytogenetic Map	7	p22.1	NCBI
HuRef	7	5,479,343 - 5,482,774 (-)	NCBI		HuRef
CHM1_1	7	5,566,362 - 5,569,815 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	5,644,671 - 5,648,124 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	5,613,124 - 5,616,577 (-)	NCBI

Actb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	142,888,870 - 142,892,509 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	142,888,870 - 142,892,509 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	142,903,115 - 142,907,976 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	142,903,115 - 142,906,754 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	143,664,795 - 143,668,403 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	143,168,256 - 143,171,864 (-)	NCBI		MGSCv36	mm8
Celera	5	139,951,533 - 139,955,141 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	81.8	NCBI

Actb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	16,776,664 - 16,779,634 (+)	NCBI		GRCr8
mRatBN7.2	12	11,663,112 - 11,666,697 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	11,663,109 - 11,672,877 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	12,473,135 - 12,476,105 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	13,096,401 - 13,099,371 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	12,127,796 - 12,130,766 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	13,715,843 - 13,718,813 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	13,715,843 - 13,718,841 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	15,745,856 - 15,749,440 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	12,047,070 - 12,050,040 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	12,076,997 - 12,079,967 (+)	NCBI
Celera	12	13,452,443 - 13,455,413 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Actb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	10,356,699 - 10,361,585 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	10,358,100 - 10,361,585 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACTB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	10,493,693 - 10,497,227 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	58,818,394 - 58,821,932 (-)	NCBI		NHGRI_mPanPan1

Actb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	140,675,973 - 140,679,567 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936765	667,053 - 670,672 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936765	667,107 - 670,627 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACTB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	4,082,216 - 4,090,356 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	4,084,275 - 4,090,383 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	4,729,278 - 4,732,693 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACTB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	16,195,676 - 16,197,161 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	52,426,752 - 52,427,879 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666090	5,777,528 - 5,781,244 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Actb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	28,087,736 - 28,090,512 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	28,087,051 - 28,090,359 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ACTB
139 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High	4				2						1
Medium	1	5	22	6	4	6	6	6	12	8	9	6
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001195845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF484115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U67202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z70044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000025413 ⟹ ENSCAFP00000023597

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	12,418,932 - 12,424,449 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000049223 ⟹ ENSCAFP00000037954

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	12,421,055 - 12,424,375 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00000063542 ⟹ ENSCAFP00000059847

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	12,421,875 - 12,462,845 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845024003 ⟹ ENSCAFP00845018851

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	12,557,667 - 12,561,086 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845024035 ⟹ ENSCAFP00845018878

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	12,558,496 - 12,561,086 (+)	Ensembl

RefSeq Acc Id:

NM_001195845 ⟹ NP_001182774

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	12,421,052 - 12,424,449 (+)	NCBI
Dog10K_Boxer_Tasha	6	13,893,047 - 13,896,436 (+)	NCBI
ROS_Cfam_1.0	6	12,557,673 - 12,561,075 (+)	NCBI
UMICH_Zoey_3.1	6	12,367,765 - 12,371,152 (+)	NCBI
UNSW_CanFamBas_1.0	6	12,301,595 - 12,304,986 (+)	NCBI
UU_Cfam_GSD_1.0	6	12,578,988 - 12,582,384 (+)	NCBI

Sequence:

show sequence

AGACCGCGTCCACCCCGCGAGCACAGGCCCCTCGCCCTCGCCGCTCCGCCGCCGCCGCCGCCGG
TTTACACCACCCCCAGTTCGCCATGGATGACGATATCGCTGCGCTTGTGGTCGACAACGGCTCC
GGCATGTGCAAGGCCGGCTTCGCAGGCGACGACGCCCCCCGGGCCGTCTTCCCCTCCATCGTGG
GGCGCCCCCGGCACCAGGGCGTGATGGTGGGCATGGGCCAGAAGGACTCCTACGTGGGCGATGA
GGCCCAGAGCAAGAGGGGCATCCTGACCCTGAAGTACCCCATTGAGCACGGCATCGTCACCAAC
TGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGCGTGGCCCCCGAGG
AGCACCCGGTGCTGCTGACCGAGGCCCCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCA
GATCATGTTCGAGACTTTCAACACCCCAGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCCTG
TACGCCTCTGGCCGCACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACGGTGC
CCATCTATGAGGGGTACGCCCTCCCCCATGCCATCTTGCGTCTGGACCTGGCTGGCCGGGACCT
GACCGACTACCTCATGAAGATCCTCACGGAGCGTGGCTACAGCTTCACCACCACCGCCGAGCGG
GAAATCGTGCGTGACATCAAGGAGAAGCTGTGTTATGTGGCCCTGGACTTCGAGCAGGAGATGG
CCACCGCGGCCTCCAGCTCCTCCCTGGAGAAGAGCTATGAGCTGCCCGACGGGCAGGTCATCAC
TATTGGCAACGAGCGGTTCCGCTGCCCAGAGGCTCTCTTCCAGCCTTCCTTCCTGGGCATGGAA
TCCTGCGGCATCCATGAAACTACCTTCAACTCCATCATGAAGTGTGACGTTGACATCCGCAAGG
ACCTCTATGCCAACACAGTGCTGTCTGGTGGAACCACCATGTACCCTGGCATCGCTGACAGGAT
GCAGAAGGAGATCACTGCCCTGGCACCCAGCACAATGAAGATCAAGATCATCGCACCCCCTGAG
CGCAAGTACTCTGTGTGGATTGGGGGCTCCATCCTGGCCTCACTGTCCACCTTCCAGCAAATGT
GGATCAGCAAGCAGGAGTACGACGAGTCCGGCCCCTCCATCGTCCACCGCAAATGCTTCTAGGC
GGACTGTTACTTTAGTTGCGTTACACCCTTTCTTGACAAAACCTAACTTGCGCAGAAACCGAGA
TGAGATTGGCATGGCTTTATTTGTTTTTTTTTTTTTTTTAATTTTTGTTTTTGAATTTTTAATT
TTTTTTATTTTTTTTTTTATTTTTTTTTTCGGTTTTGTTTTGTTTTTTTGGCGCTTGACTCAGG
ATTTAAAAACTGGAACGGAGAAGGTGACAGCAGTGGGTTGGAGCGAGCATCCCCAAAGTTCTAC
AATGTGGCCGAGGACTTTGATTGTACATTGTTCTTTTTTTTTTTTTTTAATAGTCATTCCAAAT
ATCGTGAGATGCATTGTTACAGGAAGTCCTTTGCCTTCCCAAAAGCCACCCCGTTTCTCCCTGC
AGAGAAGGGCCTGTCCTCGCCCGAGTCCACACAGGGGAGGGAAAGAGAATTGCTTTTGTGTAAA
TTATGTAGTCCAAATTTTTTTTAATCTTCGCCTTAATACTTGTTCTTTTTGTTTTATTTTGAAT
GGTCTGCCATCACGGCCCTTGTTTTTTGTCCCCCAATTGAAGATTTATGAAGGCTTTTGGTCTC
CCTGGGAGTGGGGCTGAGGCATGGAGGCATCCAGGGCTTACCTGTACACTGACTTGAGACCAGT
TCAATAAAGTGCACACCTTAAAGAAAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001182774	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC48640	(Get FASTA)	NCBI Sequence Viewer
	AAL92020	(Get FASTA)	NCBI Sequence Viewer
	CAA93907	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000023597.5
	ENSCAFP00000069989.1
	ENSCAFP00000070372.1
	ENSCAFP00000073030.1
	ENSCAFP00030024748.1
	ENSCAFP00040025058.1
	ENSCAFP00040025112.1
	ENSCAFP00040025226.1
	ENSCAFP00805001019
	ENSCAFP00845018851
	ENSCAFP00845018851.1
	ENSCAFP00845018878.1
GenBank Protein	O18840	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001182774 ⟸ NM_001195845

- UniProtKB:

Q8SPX4 (UniProtKB/Swiss-Prot), Q11209 (UniProtKB/Swiss-Prot), Q95164 (UniProtKB/Swiss-Prot), O18840 (UniProtKB/Swiss-Prot), A0A8C0K7Y1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN
TPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI
LTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFR
CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL
APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF

hide sequence

RefSeq Acc Id:

ENSCAFP00000023597 ⟸ ENSCAFT00000025413

RefSeq Acc Id:

ENSCAFP00000037954 ⟸ ENSCAFT00000049223

RefSeq Acc Id:

ENSCAFP00000059847 ⟸ ENSCAFT00000063542

RefSeq Acc Id:

ENSCAFP00845018851 ⟸ ENSCAFT00845024003

RefSeq Acc Id:

ENSCAFP00845018878 ⟸ ENSCAFT00845024035

Promoters

RGD ID:

13683571

Promoter ID:

EPDNEW_C1640

Type:

initiation region

Name:

ACTB_1

Description:

Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	12,421,860 - 12,421,920	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016020	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00030015381	UniProtKB/Swiss-Prot
	ENSCAFG00040015695	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSCAFG00805000771	UniProtKB/Swiss-Prot
	ENSCAFG00845013473	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000025413.6	UniProtKB/TrEMBL
	ENSCAFT00000095294.1	UniProtKB/Swiss-Prot
	ENSCAFT00000096462.1	UniProtKB/TrEMBL
	ENSCAFT00000103378.1	UniProtKB/TrEMBL
	ENSCAFT00030028371.1	UniProtKB/Swiss-Prot
	ENSCAFT00040028851.1	UniProtKB/TrEMBL
	ENSCAFT00040028912.1	UniProtKB/TrEMBL
	ENSCAFT00040028964.1	UniProtKB/Swiss-Prot
	ENSCAFT00805001309	UniProtKB/Swiss-Prot
	ENSCAFT00845024003	ENTREZGENE
	ENSCAFT00845024003.1	UniProtKB/TrEMBL
	ENSCAFT00845024035.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Actin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Actin/actin-like_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Actin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ATPase_NBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	cfa:403580	UniProtKB/Swiss-Prot
NCBI Gene	ACTB	ENTREZGENE
PANTHER	ACTIN, ALPHA CARDIAC MUSCLE 2	UniProtKB/TrEMBL
	ACTIN, CYTOPLASMIC 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ACTIN-42A-RELATED	UniProtKB/TrEMBL
	ACTIN-RELATED PROTEIN 1	UniProtKB/TrEMBL
	PTHR11937	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Actin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	ACTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ACTINS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ACTINS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ACTINS_ACT_LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	ACTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF53067	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8C0K7Y1	ENTREZGENE
	A0A8C0ST59_CANLF	UniProtKB/TrEMBL
	A0A8C0YZ88_CANLF	UniProtKB/TrEMBL
	A0A8I3NEJ7_CANLF	UniProtKB/TrEMBL
	A0A8I3S044_CANLF	UniProtKB/TrEMBL
	A0A8P0PP07_CANLF	UniProtKB/TrEMBL
	A0A8P0SK61_CANLF	UniProtKB/TrEMBL
	A0A8P0TNJ6_CANLF	UniProtKB/TrEMBL
	ACTB_CANLF	UniProtKB/Swiss-Prot, ENTREZGENE
	Q11209	ENTREZGENE
	Q8SPX4	ENTREZGENE
	Q95164	ENTREZGENE
UniProt Secondary	Q11209	UniProtKB/Swiss-Prot
	Q8SPX4	UniProtKB/Swiss-Prot
	Q95164	UniProtKB/Swiss-Prot
VGNC ID	VGNC:111328	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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