Slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1) - Rat Genome Database

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Gene: Slc7a1 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 1) Mus musculus
Analyze
Symbol: Slc7a1
Name: solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
RGD ID: 11316
MGI Page MGI
Description: Enables L-amino acid transmembrane transporter activity and virus receptor activity. Involved in L-arginine transmembrane transport and L-ornithine transmembrane transport. Predicted to be located in apical plasma membrane and basolateral plasma membrane. Predicted to be part of protein-containing complex. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; cranium; genitourinary system; immune system; and jaw. Orthologous to human SLC7A1 (solute carrier family 7 member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4831426K01Rik; AI447493; Atr; Atrc; Atrc-1; Atrc1; Cat; CAT-1; Cat1; cationic amino acid transporter 1; EcoR; ecotropic retroviral leukemia receptor; ecotropic retrovirus receptor; ERR; high affinity cationic amino acid transporter 1; mCAT-; mCAT-1; Rec-; Rec-1; Rev; Rev-1; solute carrier family 7 member 1; system Y+ basic amino acid transporter
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,264,220 - 148,336,714 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,264,220 - 148,336,714 (-)EnsemblGRCm39 Ensembl
GRCm385148,327,410 - 148,399,904 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,327,410 - 148,399,904 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,138,986 - 149,211,480 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365148,638,675 - 148,710,228 (-)NCBIMGSCv36mm8
Celera5146,326,464 - 146,400,567 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map588.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (EXP)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-Iodothyronamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
alachlor  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
bromobenzene  (ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichlorine  (ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
fenofibrate  (ISO)
fenvalerate  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
ibuprofen  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
maneb  (EXP)
manganese(II) chloride  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N(4)-hydroxycytidine  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel sulfate  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylephrine  (ISO)
phorone  (ISO)
pirinixic acid  (ISO)
rotenone  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
toluene  (ISO)
topiramate  (ISO)
topotecan  (ISO)
triazines  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zinc acetate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:196770   PMID:212501   PMID:219245   PMID:432756   PMID:566388   PMID:1348489   PMID:1652100   PMID:1908564   PMID:2159567   PMID:2328989   PMID:2541919   PMID:8195186  
PMID:8385111   PMID:8878860   PMID:9106662   PMID:9174363   PMID:9334265   PMID:9344682   PMID:9614060   PMID:10049595   PMID:10349636   PMID:10433265   PMID:10512203   PMID:10605025  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:11501764   PMID:11544199   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15743275   PMID:15840001   PMID:16085056  
PMID:16141072   PMID:16141073   PMID:17179747   PMID:17325243   PMID:17673271   PMID:17967808   PMID:18186934   PMID:18287559   PMID:18799693   PMID:19690063   PMID:19720825   PMID:21267068  
PMID:21873635   PMID:22081021   PMID:22090132   PMID:22312361   PMID:23009292   PMID:25115333   PMID:27357826   PMID:28246125   PMID:32554809   PMID:33034619   PMID:34321999   PMID:35147267  
PMID:36253807  


Genomics

Comparative Map Data
Slc7a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395148,264,220 - 148,336,714 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5148,264,220 - 148,336,714 (-)EnsemblGRCm39 Ensembl
GRCm385148,327,410 - 148,399,904 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5148,327,410 - 148,399,904 (-)EnsemblGRCm38mm10GRCm38
MGSCv375149,138,986 - 149,211,480 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365148,638,675 - 148,710,228 (-)NCBIMGSCv36mm8
Celera5146,326,464 - 146,400,567 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map588.48NCBI
SLC7A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381329,509,414 - 29,595,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1329,509,414 - 29,595,688 (-)EnsemblGRCh38hg38GRCh38
GRCh371330,083,551 - 30,169,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361328,981,551 - 29,067,721 (-)NCBINCBI36Build 36hg18NCBI36
Build 341328,981,551 - 29,067,721NCBI
Celera1311,159,177 - 11,245,451 (-)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1310,903,933 - 10,990,064 (-)NCBIHuRef
CHM1_11330,051,292 - 30,137,305 (-)NCBICHM1_1
T2T-CHM13v2.01328,732,320 - 28,818,340 (-)NCBIT2T-CHM13v2.0
Slc7a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,664,488 - 11,740,030 (+)NCBIGRCr8
mRatBN7.2126,628,288 - 6,703,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl126,628,007 - 6,703,849 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx127,313,543 - 7,387,012 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,936,680 - 8,010,153 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0126,964,688 - 7,038,155 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0128,032,775 - 8,108,972 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl128,032,809 - 8,108,972 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01210,119,575 - 10,192,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4127,230,519 - 7,253,858 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1127,260,446 - 7,283,785 (+)NCBI
Celera128,375,860 - 8,449,856 (+)NCBICelera
RH 3.4 Map1274.6RGD
Cytogenetic Map12p11NCBI
Slc7a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543116,260,605 - 16,315,332 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543116,270,648 - 16,315,280 (+)NCBIChiLan1.0ChiLan1.0
SLC7A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21429,098,114 - 29,183,614 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11320,205,111 - 20,290,480 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01310,791,600 - 10,877,082 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11328,832,128 - 28,907,403 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1328,837,200 - 28,907,403 (-)Ensemblpanpan1.1panPan2
SLC7A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12510,272,949 - 10,363,793 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2510,292,926 - 10,359,383 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2510,337,889 - 10,404,361 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02510,337,606 - 10,477,631 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2510,406,689 - 10,476,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12510,300,565 - 10,367,010 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02510,308,115 - 10,374,587 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02510,349,966 - 10,416,429 (+)NCBIUU_Cfam_GSD_1.0
Slc7a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945171,434,308 - 171,509,248 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647224,444,772 - 24,517,792 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647224,442,907 - 24,517,834 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl116,538,045 - 6,604,658 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1116,538,053 - 6,604,654 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2116,317,578 - 6,359,913 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap11pNCBI
SLC7A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.138,522,268 - 8,606,437 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl38,527,273 - 8,606,402 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605735,759,948 - 35,844,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247768,897,489 - 8,934,722 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247768,859,519 - 8,935,370 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc7a1
3020 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1999
Count of miRNA genes:841
Interacting mature miRNAs:1090
Transcripts:ENSMUST00000048116, ENSMUST00000138257, ENSMUST00000138596
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5139985755151658149Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129787831151758149Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5133925558151758149Mouse
13504737Ifvrq5_minfluenza virus resistance QTL 5 (mouse)5139509801151658149Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129520084151758149Mouse
13504735Ifvrq7_minfluenza virus resistance QTL 7 (mouse)5139509801151658149Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse

Markers in Region
M26687  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385148,332,158 - 148,332,290UniSTSGRCm38
MGSCv375149,143,734 - 149,143,866UniSTSGRCm37
Celera5146,331,204 - 146,331,336UniSTS
Cytogenetic Map5G3UniSTS
cM Map584.0UniSTS
Whitehead/MRC_RH51760.29UniSTS
AI447493  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385148,328,388 - 148,328,512UniSTSGRCm38
MGSCv375149,139,964 - 149,140,088UniSTSGRCm37
Celera5146,327,442 - 146,327,566UniSTS
Cytogenetic Map5G3UniSTS
cM Map584.0UniSTS
Whitehead/MRC_RH51761.7UniSTS
Slc7a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G3UniSTS
cM Map584.0UniSTS
Slc7a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G3UniSTS
Cyba  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E1UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G3UniSTS
cM Map871.04UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD559786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ098794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN226407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN226408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN226410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M26687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048116   ⟹   ENSMUSP00000046714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,264,220 - 148,336,714 (-)Ensembl
GRCm38.p6 Ensembl5148,327,410 - 148,399,904 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138257   ⟹   ENSMUSP00000117781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,271,330 - 148,329,625 (-)Ensembl
GRCm38.p6 Ensembl5148,334,520 - 148,392,815 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138596   ⟹   ENSMUSP00000122914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,288,963 - 148,308,356 (-)Ensembl
GRCm38.p6 Ensembl5148,352,153 - 148,371,546 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,328,227 - 148,330,458 (-)Ensembl
GRCm38.p6 Ensembl5148,391,417 - 148,393,648 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,277,389 - 148,279,539 (-)Ensembl
GRCm38.p6 Ensembl5148,340,579 - 148,342,729 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202457   ⟹   ENSMUSP00000144000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5148,278,891 - 148,336,601 (-)Ensembl
GRCm38.p6 Ensembl5148,342,081 - 148,399,791 (-)Ensembl
RefSeq Acc Id: NM_001301424   ⟹   NP_001288353
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,264,220 - 148,329,625 (-)NCBI
GRCm385148,327,410 - 148,392,815 (-)NCBI
Celera5146,326,464 - 146,400,567 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007513   ⟹   NP_031539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,264,220 - 148,336,714 (-)NCBI
GRCm385148,327,410 - 148,399,904 (-)ENTREZGENE
MGSCv375149,138,986 - 149,211,480 (-)RGD
Celera5146,326,464 - 146,400,567 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504796   ⟹   XP_006504859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395148,264,572 - 148,331,266 (-)NCBI
GRCm385148,328,786 - 148,394,456 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031539   ⟸   NM_007513
- UniProtKB: P30824 (UniProtKB/Swiss-Prot),   Q09143 (UniProtKB/Swiss-Prot),   Q3UGD6 (UniProtKB/TrEMBL),   Q3UTL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504859   ⟸   XM_006504796
- Peptide Label: isoform X1
- UniProtKB: P30824 (UniProtKB/Swiss-Prot),   Q09143 (UniProtKB/Swiss-Prot),   Q3UGD6 (UniProtKB/TrEMBL),   Q3UTL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288353   ⟸   NM_001301424
- UniProtKB: P30824 (UniProtKB/Swiss-Prot),   Q09143 (UniProtKB/Swiss-Prot),   Q3UGD6 (UniProtKB/TrEMBL),   Q3UTL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000122914   ⟸   ENSMUST00000138596
RefSeq Acc Id: ENSMUSP00000144000   ⟸   ENSMUST00000202457
RefSeq Acc Id: ENSMUSP00000117781   ⟸   ENSMUST00000138257
RefSeq Acc Id: ENSMUSP00000046714   ⟸   ENSMUST00000048116
Protein Domains
Cationic amino acid transporter C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q09143-F1-model_v2 AlphaFold Q09143 1-622 view protein structure

Promoters
RGD ID:6888828
Promoter ID:EPDNEW_M7865
Type:initiation region
Name:Slc7a1_1
Description:Mus musculus solute carrier family 7 (cationic amino acid transporter,y+ system), member 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385148,399,806 - 148,399,866EPDNEW
RGD ID:6837025
Promoter ID:MM_KWN:44918
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain
Transcripts:UC009AOR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365149,140,056 - 149,140,556 (-)MPROMDB
RGD ID:6848836
Promoter ID:MM_TRO:7932
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung,   MEF_B6
Transcripts:MTR013789.5.2994.4
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365149,153,714 - 149,154,214 (-)MPROMDB
RGD ID:6838387
Promoter ID:MM_KWN:44919
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:OTTMUST00000063336
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365149,182,736 - 149,183,887 (-)MPROMDB
RGD ID:6838386
Promoter ID:MM_KWN:44921
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007513
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365149,211,114 - 149,211,614 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88117 AgrOrtholog
Ensembl Genes ENSMUSG00000041313 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048116 ENTREZGENE
  ENSMUST00000048116.15 UniProtKB/Swiss-Prot
  ENSMUST00000138257 ENTREZGENE
  ENSMUST00000138257.8 UniProtKB/TrEMBL
  ENSMUST00000138596.2 UniProtKB/TrEMBL
  ENSMUST00000202457.4 UniProtKB/TrEMBL
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cat_AA_permease UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAT_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11987 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88117 ENTREZGENE
NCBI Gene 11987 ENTREZGENE
PANTHER HIGH AFFINITY CATIONIC AMINO ACID TRANSPORTER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INNER MEMBRANE TRANSPORTER YGJI-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AA_permease_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc7a1 PhenoGen
PIRSF AA_transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YU45_MOUSE UniProtKB/TrEMBL
  CTR1_MOUSE UniProtKB/Swiss-Prot
  D3Z161_MOUSE UniProtKB/TrEMBL
  E9Q3N1_MOUSE UniProtKB/TrEMBL
  P30824 ENTREZGENE
  Q09143 ENTREZGENE
  Q3TQZ8_MOUSE UniProtKB/TrEMBL
  Q3UGD6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UTL4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P30824 UniProtKB/Swiss-Prot