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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:blood cholesterol amount
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Accession:VT:0000180 term browser browse the term
Definition:The proportion, quantity, or volume in whole blood, serum, or plasma of the most abundant steroid in animal tissues, and precursor to steroid hormones and bile salts; also component of plasma membranes.
Synonyms:related_synonym: blood cholesterol level;   circulating cholesterol level


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blood cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl1 Serum cholesterol level QTL 1 IDA RGD PMID:10634822 RGD:61092 NCBI chr15:16,725,528...80,672,115 JBrowse link
Q Scl11 Serum cholesterol level QTL 11 IDA RGD PMID:11414700 RGD:619656 NCBI chr14:17,573,412...19,726,296 JBrowse link
Q Scl14 Serum cholesterol level QTL 14 IDA RGD PMID:14739155 RGD:737694 NCBI chr 5:108,845,856...153,845,856 JBrowse link
Q Scl15 Serum cholesterol level QTL 15 IDA RGD PMID:14739155 RGD:737694 NCBI chr 5:33,215,665...78,215,665 JBrowse link
Q Scl16 Serum cholesterol level QTL 16 IDA RGD PMID:14739155 RGD:737694 NCBI chr 8:30,856,404...75,856,404 JBrowse link
Q Scl17 Serum cholesterol level QTL 17 IDA RGD PMID:14739155 RGD:737694 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Scl19 Serum cholesterol QTL 19 IDA RGD PMID:14709677 RGD:1299960 NCBI chr 1:90,532,338...123,479,925 JBrowse link
Q Scl2 Serum cholesterol level QTL 2 IDA RGD PMID:10634822 RGD:61092 NCBI chr 5:59,793,399...143,070,159 JBrowse link
Q Scl20 Serum cholesterol level QTL 20 IDA RGD PMID:14709677 RGD:1299960 NCBI chr 5:82,394,392...166,664,054 JBrowse link
Q Scl21 Serum cholesterol level QTL 21 IDA RGD PMID:14709677 RGD:1299960 NCBI chr12:7,196,730...46,669,029 JBrowse link
Q Scl22 Serum cholesterol level QTL 22 IDA RGD PMID:9199194 RGD:61055 NCBI chr18:11,941,791...31,393,320 JBrowse link
Q Scl25 Serum cholesterol level QTL 25 IDA RGD PMID:11721057 RGD:70849 NCBI chr 1:94,494,440...117,601,394 JBrowse link
Q Scl26 Serum cholesterol level QTL 26 IDA RGD PMID:11721057 RGD:70849 NCBI chr 5:43,726,656...86,724,018 JBrowse link
Q Scl29 Serum cholesterol level QTL 29 IDA RGD PMID:14724732 RGD:737686 NCBI chr 6:35,098,709...71,636,405 JBrowse link
Q Scl3 Serum cholesterol level QTL 3 IDA RGD PMID:10634822 RGD:61092 NCBI chr 7:44,867,533...89,867,533 JBrowse link
Q Scl30 Serum cholesterol level QTL 30 IDA RGD PMID:15452030 RGD:1302893 NCBI chr 7:19,654,317...49,753,746 JBrowse link
Q Scl31 Serum cholesterol level QTL 31 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:50,890,908...60,781,592 JBrowse link
Q Scl33 Serum cholesterol QTL 33 IDA RGD PMID:14709677 RGD:1299960
Q Scl34 Serum cholesterol QTL 34 IDA RGD PMID:14709677 RGD:1299960 NCBI chr 1:180,359,209...218,108,781 JBrowse link
Q Scl35 Serum cholesterol QTL 35 IDA RGD PMID:14709677 RGD:1299960 NCBI chr 5:28,515,489...73,515,489 JBrowse link
Q Scl36 Serum cholesterol QTL 36 IDA RGD PMID:14709677 RGD:1299960 NCBI chr 1:53,863,041...90,532,583 JBrowse link
Q Scl4 Serum cholesterol level QTL 4 IDA RGD PMID:9633608 RGD:619667 NCBI chr 4:95,174,120...140,174,120 JBrowse link
Q Scl44 Serum cholesterol level QTL 44 IDA RGD PMID:16061941 RGD:1547851 NCBI chr 5:40,128,307...148,607,290 JBrowse link
Q Scl45 Serum cholesterol level QTL 45 IDA RGD PMID:16061941 RGD:1547851 NCBI chr14:50,023,211...95,023,211 JBrowse link
Q Scl46 Serum cholesterol level QTL 46 IDA RGD PMID:16061941 RGD:1547851 NCBI chr 4:132,396,220...177,396,220 JBrowse link
Q Scl47 Serum cholesterol level QTL 47 IDA RGD PMID:16061941 RGD:1547851 NCBI chr10:50,574,707...95,574,707 JBrowse link
Q Scl48 Serum cholesterol level QTL 48 IDA RGD PMID:16061941 RGD:1547851 NCBI chr12:9,603,277...46,669,029 JBrowse link
Q Scl5 Serum cholesterol level QTL 5 IDA RGD PMID:9633608 RGD:619667 NCBI chr 1:236,125,214...260,522,016 JBrowse link
Q Scl54 Serum cholesterol level QTL 54 IDA RGD PMID:17620956 RGD:2290428 NCBI chr 5:31,663,789...131,345,958 JBrowse link
Q Scl55 Serum cholesterol level QTL 55 IDA RGD PMID:17620956 RGD:2290428 NCBI chr 2:26,917,817...136,917,119 JBrowse link
Q Scl56 Serum cholesterol level QTL 56 IDA RGD PMID:17620956 RGD:2290428 NCBI chr 3:1...91,609,953 JBrowse link
Q Scl57 Serum cholesterol level QTL 57 IDA RGD PMID:17620956 RGD:2290428 NCBI chr 9:36,962,359...95,410,867 JBrowse link
Q Scl58 Serum cholesterol level QTL 58 IDA RGD PMID:17620956 RGD:2290428 NCBI chr11:12,831,046...25,121,472 JBrowse link
Q Scl59 Serum cholesterol level QTL 59 IDA RGD PMID:18753676 RGD:2300117 NCBI chr14:55,147,478...100,147,478 JBrowse link
Q Scl6 Serum cholesterol level QTL 6 IDA RGD PMID:12482837 RGD:629577 NCBI chr 1:72,197,680...90,508,767 JBrowse link
Q Scl60 Serum cholesterol level QTL 60 IDA RGD PMID:10720472 RGD:619689 NCBI chr 5:143,608,201...161,165,651 JBrowse link
Q Scl62 Serum cholesterol level QTL 62 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:1...38,710,544 JBrowse link
Q Scl63 Serum cholesterol level QTL 63 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 3:98,535,255...168,026,850 JBrowse link
Q Scl64 Serum cholesterol level QTL 64 IDA RGD PMID:19584880 RGD:2312642 NCBI chr 5:68,984,307...104,251,008 JBrowse link
Q Scl65 Serum cholesterol level QTL 65 IDA RGD PMID:19584880 RGD:2312642 NCBI chr10:57,134,272...102,134,272 JBrowse link
Q Scl66 Serum cholesterol level QTL 66 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 8:30,848,259...105,647,037 JBrowse link
Q Scl67 Serum cholesterol level QTL 67 IDA RGD PMID:11071303 RGD:619669
Q Scl7 Serum cholesterol level QTL 7 IDA RGD PMID:12482837 RGD:629577 NCBI chr 7:37,960,569...82,960,569 JBrowse link
Q Scl8 Serum cholesterol level QTL8 IDA RGD PMID:12482837 RGD:629577
Q Scl9 Serum cholesterol level QTL 9 IDA RGD PMID:12482837 RGD:629577 NCBI chr16:15,726,433...21,034,895 JBrowse link
blood HDL cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl12 Serum cholesterol level QTL 12 IDA RGD PMID:8698878 RGD:61079 NCBI chr19:13,926,401...30,303,727 JBrowse link
Q Scl27 Serum cholesterol level QTL 27 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:52,292,875...59,796,643 JBrowse link
Q Scl28 Serum cholesterol level QTL 28 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:11,944,299...24,797,117 JBrowse link
Q Scl32 Serum cholesterol level QTL 32 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:15,781,592...60,781,592 JBrowse link
Q Scl61 Serum cholesterol level QTL 61 IDA RGD PMID:10720472 RGD:619689 NCBI chr17:27,389,946...53,481,766 JBrowse link
Q Scl79 Serum cholesterol level QTL 79 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 7:89,867,376...101,773,158 JBrowse link
blood LDL cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl18 Serum cholesterol level QTL 18 IDA RGD PMID:14739155 RGD:737694 NCBI chr 5:79,584,860...124,584,860 JBrowse link
Q Scl69 Serum cholesterol level QTL 69 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:20,714,090...65,714,090 JBrowse link
Q Scl70 Serum cholesterol level QTL 70 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:20,714,090...65,714,090 JBrowse link
Q Scl71 Serum cholesterol level QTL 71 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,192,455...27,494,778 JBrowse link
Q Scl72 Serum cholesterol level QTL 72 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,192,455...27,494,778 JBrowse link
Q Scl73 Serum cholesterol level QTL 73 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,192,455...27,494,778 JBrowse link
Q Scl74 Serum cholesterol level QTL 74 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:38,192,233...50,749,747 JBrowse link
Q Scl75 Serum cholesterol level QTL 75 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 3:38,192,233...50,749,747 JBrowse link
Q Scl80 Serum cholesterol level QTL 80 IDA RGD PMID:25296178 RGD:10402111 NCBI chr11:76,957,131...83,051,965 JBrowse link
blood VLDL cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl68 Serum cholesterol level QTL 68 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:15,781,592...60,781,592 JBrowse link
Q Scl76 Serum cholesterol level QTL 76 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 4:49,178,116...57,114,705 JBrowse link
Q Scl77 Serum cholesterol level QTL 77 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 4:49,178,116...57,114,705 JBrowse link
Q Scl78 Serum cholesterol level QTL 78 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 4:49,178,116...57,114,705 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2888
    organism trait 1150
      homeostasis trait 694
        blood homeostasis trait 534
          blood molecular composition trait 534
            blood lipid amount 155
              blood sterol amount 99
                blood cholesterol amount 99
                  blood HDL cholesterol amount 16
                  blood IDL cholesterol amount 0
                  blood LDL cholesterol amount + 13
                  blood VLDL cholesterol amount 8
                  blood chylomicron cholesterol amount 0
                  blood non-HDL cholesterol amount 0
Path 2
Term Annotations click to browse term
  vertebrate trait 2888
    organism trait 1150
      homeostasis trait 694
        molecule homeostasis trait 362
          lipid homeostasis trait 161
            sterol homeostasis trait 105
              sterol amount 105
                cholesterol amount 105
                  blood cholesterol amount 99
                    blood HDL cholesterol amount 16
                    blood IDL cholesterol amount 0
                    blood LDL cholesterol amount + 13
                    blood VLDL cholesterol amount 8
                    blood chylomicron cholesterol amount 0
                    blood non-HDL cholesterol amount 0
paths to the root