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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal ocular surface morphology
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Accession:MP:0013754 term browser browse the term
Definition:any structural anomaly of the integrated unit (of the eye) that consists of the conjunctiva, the corneal surface, and the ocular mucosal adnexa including the lid margins and the meibomian gland openings, the lacrimal glands and the lacrimal drainage system, all which are critical to maintain ocular surface integrity and provide protection from external antigens and pathogenic microorganisms
Synonyms:exact_synonym: abnormal eye surface morphology;   abnormal eye surface region morphology;   abnormal ocular surface region morphology


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abnormal ocular surface morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator IAGP MGI PMID:20696775 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Dkk2 dickkopf WNT signaling pathway inhibitor 2 IAGP MGI PMID:16672341 NCBI chr 3:131,791,027...131,886,065
Ensembl chr 3:131,791,053...131,886,065 		JBrowse link
G Il1r1 interleukin 1 receptor, type I IAGP MGI PMID:20696775 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:21600198 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Slc52a3 solute carrier protein family 52, member 3 IAGP MGI PMID:26660539 NCBI chr 2:151,838,431...151,851,178
Ensembl chr 2:151,838,431...151,851,178 		JBrowse link
abnormal conjunctiva goblet cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23293291 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
abnormal conjunctiva goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator IAGP MGI PMID:20696775 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Il1r1 interleukin 1 receptor, type I IAGP MGI PMID:20696775 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417 		JBrowse link
G Muc5ac mucin 5, subtypes A and C, tracheobronchial/gastric IAGP MGI PMID:23272068 NCBI chr 7:141,342,695...141,372,964
Ensembl chr 7:141,342,709...141,372,968 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta IAGP MGI PMID:15241416 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Nrtn neurturin IAGP MGI PMID:14507865 NCBI chr17:57,058,323...57,064,548
Ensembl chr17:57,058,325...57,064,530 		JBrowse link
abnormal conjunctiva goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thbs1 thrombospondin 1 IAGP MGI PMID:19700744 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614 		JBrowse link
abnormal conjunctiva morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IAGP MGI PMID:32851726 NCBI chr  X:99,445,827...99,537,885
Ensembl chr  X:99,445,827...99,486,323 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:11053261 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Frem1 Fras1 related extracellular matrix protein 1 IAGP MGI PMID:21507892 NCBI chr 4:82,816,157...82,970,743
Ensembl chr 4:82,816,164...82,970,576 		JBrowse link
G Plg plasminogen IAGP MGI PMID:9473227 NCBI chr17:12,597,496...12,638,271
Ensembl chr17:12,597,495...12,638,272 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Snai2 snail family zinc finger 2 IAGP MGI PMID:9659933 NCBI chr16:14,523,716...14,527,259
Ensembl chr16:14,523,716...14,527,249 		JBrowse link
abnormal conjunctival epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fas Fas cell surface death receptor IAGP MGI PMID:17208228 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23293291 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:21600198 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta IAGP MGI PMID:18441309 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Plg plasminogen IAGP MGI PMID:9473227 NCBI chr17:12,597,496...12,638,271
Ensembl chr17:12,597,495...12,638,272 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 IAGP MGI PMID:18441309 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826 		JBrowse link
abnormal cornea epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP-binding cassette, sub-family B member 5 IAGP MGI PMID:25030174 NCBI chr12:118,831,221...118,930,169
Ensembl chr12:118,831,559...118,930,156 		JBrowse link
G Ace2 angiotensin converting enzyme 2 IAGP MGI PMID:32725927 NCBI chr  X:162,922,338...162,971,414
Ensembl chr  X:162,922,328...162,971,416 		JBrowse link
G Adam17 a disintegrin and metallopeptidase domain 17 IAGP MGI PMID:20194968 NCBI chr12:21,373,510...21,423,633
Ensembl chr12:21,373,510...21,423,633 		JBrowse link
G Adcyap1 adenylate cyclase activating polypeptide 1 IAGP MGI PMID:27345595 NCBI chr17:93,506,448...93,513,967
Ensembl chr17:93,506,445...93,513,965 		JBrowse link
G Aire autoimmune regulator IAGP MGI PMID:20696775 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Aqp5 aquaporin 5 IAGP MGI PMID:33013441 NCBI chr15:99,488,909...99,492,710
Ensembl chr15:99,488,663...99,492,710 		JBrowse link
G Arsb arylsulfatase B IAGP MGI PMID:12904606 NCBI chr13:93,908,187...94,079,524
Ensembl chr13:93,908,138...94,079,524 		JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase IAGP MGI PMID:26333994 NCBI chr 3:88,857,721...88,986,682
Ensembl chr 3:88,857,929...88,986,682 		JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IAGP MGI PMID:32851726 NCBI chr  X:99,445,827...99,537,885
Ensembl chr  X:99,445,827...99,486,323 		JBrowse link
G Col18a1 collagen, type XVIII, alpha 1 IAGP MGI PMID:12766032 NCBI chr10:76,888,013...77,002,351
Ensembl chr10:76,888,012...77,002,382 		JBrowse link
G Col8a2 collagen, type VIII, alpha 2 IAGP MGI PMID:19578028 NCBI chr 4:126,180,613...126,208,123
Ensembl chr 4:126,180,586...126,208,123 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11585809 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dkk2 dickkopf WNT signaling pathway inhibitor 2 IAGP MGI PMID:16672341 NCBI chr 3:131,791,027...131,886,065
Ensembl chr 3:131,791,053...131,886,065 		JBrowse link
G Dstn destrin IAGP MGI PMID:8603845 PMID:12700171 PMID:17051153 NCBI chr 2:143,757,251...143,785,244
Ensembl chr 2:143,757,240...143,785,244 		JBrowse link
G Eda ectodysplasin-A IAGP MGI PMID:15972955 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:10395790 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxe3 forkhead box E3 IAGP MGI PMID:109409 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G Grip1 glutamate receptor interacting protein 1 IAGP MGI PMID:10974668 NCBI chr10:119,289,810...119,923,172
Ensembl chr10:119,289,735...119,923,166 		JBrowse link
G Gsdma3 gasdermin A3 IAGP MGI PMID:9434940 NCBI chr11:98,517,175...98,529,627
Ensembl chr11:98,517,186...98,529,052 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23293291 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:27483349 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Il1r1 interleukin 1 receptor, type I IAGP MGI PMID:20696775 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417 		JBrowse link
G Inhbb inhibin beta-B IAGP MGI PMID:8125256 NCBI chr 1:119,343,193...119,349,978
Ensembl chr 1:119,343,195...119,349,978 		JBrowse link
G Itga9 integrin alpha 9 IAGP MGI PMID:18633440 NCBI chr 9:118,435,777...118,730,071
Ensembl chr 9:118,435,758...118,730,071 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:17060454 PMID:21600198 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Klhl20 kelch-like 20 IAGP MGI PMID:22511632 NCBI chr 1:160,915,945...160,959,078
Ensembl chr 1:160,915,945...160,959,081 		JBrowse link
G Krt12 keratin 12 IAGP MGI PMID:8977471 PMID:26758872 NCBI chr11:99,306,490...99,313,419
Ensembl chr11:99,306,492...99,313,085 		JBrowse link
G Krt4 keratin 4 IAGP MGI PMID:9727004 NCBI chr15:101,826,970...101,833,170
Ensembl chr15:101,826,970...101,833,170 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 IAGP MGI PMID:18424556 NCBI chr 2:109,747,919...109,844,602
Ensembl chr 2:109,747,992...109,844,602 		JBrowse link
G Limk2 LIM domain kinase 2 IAGP MGI PMID:23071748 NCBI chr11:3,293,297...3,359,238
Ensembl chr11:3,294,256...3,359,189 		JBrowse link
G Nrtn neurturin IAGP MGI PMID:14507865 NCBI chr17:57,058,323...57,064,548
Ensembl chr17:57,058,325...57,064,530 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:4972360 PMID:12692153 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Plg plasminogen IAGP MGI PMID:9473227 NCBI chr17:12,597,496...12,638,271
Ensembl chr17:12,597,495...12,638,272 		JBrowse link
G Pltp phospholipid transfer protein IAGP MGI PMID:21514421 NCBI chr 2:164,681,441...164,699,564
Ensembl chr 2:164,681,438...164,699,631 		JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:15128703 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973 		JBrowse link
G Psen2 presenilin 2 IAGP MGI PMID:15128703 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) IAGP MGI PMID:20713516 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Scrib scribbled planar cell polarity IAGP MGI PMID:24095903 NCBI chr15:75,919,011...75,941,633
Ensembl chr15:75,919,007...75,941,633 		JBrowse link
G Slc4a11 solute carrier family 4, sodium bicarbonate transporter-like, member 11 IAGP MGI PMID:19586905 PMID:20185830 NCBI chr 2:130,526,027...130,539,439
Ensembl chr 2:130,526,033...130,539,439 		JBrowse link
G Sod1 superoxide dismutase 1, soluble IAGP MGI PMID:25036096 NCBI chr16:90,017,650...90,023,221
Ensembl chr16:90,017,642...90,023,217 		JBrowse link
G Tfap2b transcription factor AP-2 beta IAGP MGI PMID:27483349 NCBI chr 1:19,279,132...19,309,071
Ensembl chr 1:19,279,138...19,308,800 		JBrowse link
G Thbs1 thrombospondin 1 IAGP MGI PMID:19700744 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614 		JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:20713516 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:16107615 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
abnormal exorbital lacrimal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f1 E2F transcription factor 1 IAGP MGI PMID:8653789 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
abnormal lacrimal gland branching morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
abnormal lacrimal gland development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:22745308 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:22745308 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Ndst2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 IAGP MGI PMID:22745308 NCBI chr14:20,773,798...20,784,638
Ensembl chr14:20,773,798...20,784,630 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IAGP MGI PMID:18077586 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:12834866 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Ugdh UDP-glucose dehydrogenase IAGP MGI PMID:22745308 NCBI chr 5:65,570,550...65,593,185
Ensembl chr 5:65,570,564...65,593,292 		JBrowse link
abnormal lacrimal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator IAGP MGI PMID:20696775 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Aqp5 aquaporin 5 IAGP MGI PMID:33013441 NCBI chr15:99,488,909...99,492,710
Ensembl chr15:99,488,663...99,492,710 		JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IAGP MGI PMID:16473829 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7685652 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Ctnnd1 catenin delta 1 IAGP MGI PMID:16399075 NCBI chr 2:84,417,440...84,489,321
Ensembl chr 2:84,430,415...84,481,109
Ensembl chr 2:84,430,415...84,481,109 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:17898284 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Id3 inhibitor of DNA binding 3 IAGP MGI PMID:15485632 NCBI chr 4:135,871,133...135,872,703
Ensembl chr 4:135,870,808...135,873,066 		JBrowse link
G Il1r1 interleukin 1 receptor, type I IAGP MGI PMID:20696775 NCBI chr 1:40,261,651...40,355,361
Ensembl chr 1:40,264,240...40,356,417 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:22240097 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Prlr prolactin receptor IAGP MGI PMID:11133844 NCBI chr15:10,177,324...10,349,276
Ensembl chr15:10,177,324...10,349,266 		JBrowse link
G Sirt1 sirtuin 1 IAGP MGI PMID:28273169 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 IAGP MGI PMID:17898284 NCBI chr 4:151,004,612...151,030,561
Ensembl chr 4:150,999,019...151,030,559 		JBrowse link
abnormal nasolacrimal duct morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Kat6b K(lysine) acetyltransferase 6B IAGP MGI PMID:10821753 PMID:21804188 NCBI chr14:21,549,284...21,722,546
Ensembl chr14:21,531,502...21,722,546 		JBrowse link
abnormal palpebral conjunctiva morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
abnormal tear film morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Awat1 acyl-CoA wax alcohol acyltransferase 1 IAGP MGI PMID:34113821 NCBI chr  X:99,615,853...99,621,812
Ensembl chr  X:99,615,857...99,621,811 		JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IAGP MGI PMID:32851726 PMID:34113821 NCBI chr  X:99,445,827...99,537,885
Ensembl chr  X:99,445,827...99,486,323 		JBrowse link
G Far2 fatty acyl CoA reductase 2 IAGP MGI PMID:35238077 NCBI chr 6:147,948,914...148,084,256
Ensembl chr 6:147,948,757...148,084,256 		JBrowse link
absent conjunctiva goblet cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:17060454 PMID:21600198 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
absent cornea epithelium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frem1 Fras1 related extracellular matrix protein 1 IAGP MGI PMID:21507892 NCBI chr 4:82,816,157...82,970,743
Ensembl chr 4:82,816,164...82,970,576 		JBrowse link
G Plg plasminogen IAGP MGI PMID:9473227 NCBI chr17:12,597,496...12,638,271
Ensembl chr17:12,597,495...12,638,272 		JBrowse link
absent exorbital lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:11274405 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
absent intraorbital lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc1 forkhead box C1 IAGP MGI PMID:16470615 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
absent lacrimal gland bud term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
absent lacrimal glands term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:10964474 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:18077586 PMID:20503384 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fign fidgetin IEA MGI NCBI chr 2:63,801,852...63,928,382
Ensembl chr 2:63,801,851...63,928,382 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:22745308 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:22745308 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965 		JBrowse link
G Ndst1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr18:60,817,566...60,907,465
Ensembl chr18:60,817,566...60,881,722 		JBrowse link
G Ndst2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 IAGP MGI PMID:18077586 PMID:22745308 NCBI chr14:20,773,798...20,784,638
Ensembl chr14:20,773,798...20,784,630 		JBrowse link
G Otx1 orthodenticle homeobox 1 IAGP MGI PMID:8841200 PMID:9077465 PMID:9521907 PMID:10068635 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 IAGP MGI PMID:18077586 NCBI chr 5:121,268,596...121,329,460
Ensembl chr 5:121,268,596...121,329,460 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:10227294 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Ugdh UDP-glucose dehydrogenase IAGP MGI PMID:22745308 NCBI chr 5:65,570,550...65,593,185
Ensembl chr 5:65,570,564...65,593,292 		JBrowse link
absent nasolacrimal duct term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 IAGP MGI PMID:14623956 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607067 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607067 PMID:9240560 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924 		JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607067 PMID:9240560 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952 		JBrowse link
conjunctival telangiectasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IAGP MGI PMID:32851726 NCBI chr  X:99,445,827...99,537,885
Ensembl chr  X:99,445,827...99,486,323 		JBrowse link
cornea epithelium hyperplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC, WNT signaling pathway regulator IAGP MGI PMID:17002498 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 IAGP MGI PMID:16847346 NCBI chr 7:112,777,820...112,913,333
Ensembl chr 7:112,806,672...112,913,333 		JBrowse link
G Dkk2 dickkopf WNT signaling pathway inhibitor 2 IAGP MGI PMID:16672341 NCBI chr 3:131,791,027...131,886,065
Ensembl chr 3:131,791,053...131,886,065 		JBrowse link
G Dstn destrin IAGP MGI PMID:11182022 PMID:12700171 NCBI chr 2:143,757,251...143,785,244
Ensembl chr 2:143,757,240...143,785,244 		JBrowse link
G Klhl20 kelch-like 20 IAGP MGI PMID:22511632 NCBI chr 1:160,915,945...160,959,078
Ensembl chr 1:160,915,945...160,959,081 		JBrowse link
G Krt4 keratin 4 IAGP MGI PMID:9727004 NCBI chr15:101,826,970...101,833,170
Ensembl chr15:101,826,970...101,833,170 		JBrowse link
cornea epithelium hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP-binding cassette, sub-family B member 5 IAGP MGI PMID:25030174 NCBI chr12:118,831,221...118,930,169
Ensembl chr12:118,831,559...118,930,156 		JBrowse link
G Bnc1 basonuclin zinc finger protein 1 IAGP MGI PMID:17971852 NCBI chr 7:81,616,401...81,642,047
Ensembl chr 7:81,616,401...81,642,055 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 IAGP MGI PMID:18424556 NCBI chr 2:109,747,919...109,844,602
Ensembl chr 2:109,747,992...109,844,602 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IAGP MGI PMID:18436818 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
decreased conjunctiva goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23293291 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta IAGP MGI PMID:15671285 PMID:18441309 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:23293291 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Thbs1 thrombospondin 1 IAGP MGI PMID:19700744 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614 		JBrowse link
decreased cornea epithelium thickness term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsb arylsulfatase B IAGP MGI PMID:12904606 NCBI chr13:93,908,187...94,079,524
Ensembl chr13:93,908,138...94,079,524 		JBrowse link
G Bnc1 basonuclin zinc finger protein 1 IAGP MGI PMID:17971852 NCBI chr 7:81,616,401...81,642,047
Ensembl chr 7:81,616,401...81,642,055 		JBrowse link
G Foxe3 forkhead box E3 IAGP MGI PMID:16199865 NCBI chr 4:114,781,640...114,783,264
Ensembl chr 4:114,782,344...114,783,210 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:27483349 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Itga9 integrin alpha 9 IAGP MGI PMID:18633440 NCBI chr 9:118,435,777...118,730,071
Ensembl chr 9:118,435,758...118,730,071 		JBrowse link
G Klf4 Kruppel-like transcription factor 4 (gut) IAGP MGI PMID:17060454 NCBI chr 4:55,527,137...55,536,984
Ensembl chr 4:55,527,143...55,532,466 		JBrowse link
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
G Krt12 keratin 12 IAGP MGI PMID:8977471 NCBI chr11:99,306,490...99,313,419
Ensembl chr11:99,306,492...99,313,085 		JBrowse link
G Krt14 keratin 14 IAGP MGI PMID:7539810 NCBI chr11:100,093,988...100,098,336
Ensembl chr11:100,093,988...100,098,374 		JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 IAGP MGI PMID:18424556 NCBI chr 2:109,747,919...109,844,602
Ensembl chr 2:109,747,992...109,844,602 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta IAGP MGI PMID:20568247 NCBI chr 2:33,450,977...33,531,219
Ensembl chr 2:33,450,977...33,530,620 		JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:22503753 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Pax6 paired box 6 IAGP MGI PMID:12692153 PMID:12714618 PMID:17051153 NCBI chr 2:105,499,241...105,528,755
Ensembl chr 2:105,499,245...105,527,709 		JBrowse link
G Pxdn peroxidasin IAGP MGI PMID:24895407 NCBI chr12:29,986,641...30,067,657
Ensembl chr12:29,987,607...30,067,657 		JBrowse link
G Tfap2b transcription factor AP-2 beta IAGP MGI PMID:27483349 NCBI chr 1:19,279,132...19,309,071
Ensembl chr 1:19,279,138...19,308,800 		JBrowse link
disorganized cornea epithelium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arsb arylsulfatase B IAGP MGI PMID:12904606 NCBI chr13:93,908,187...94,079,524
Ensembl chr13:93,908,138...94,079,524 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:11053261 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Gsdma3 gasdermin A3 IAGP MGI PMID:9434940 NCBI chr11:98,517,175...98,529,627
Ensembl chr11:98,517,186...98,529,052 		JBrowse link
G Krt12 keratin 12 IAGP MGI PMID:26758872 NCBI chr11:99,306,490...99,313,419
Ensembl chr11:99,306,492...99,313,085 		JBrowse link
G Pltp phospholipid transfer protein IAGP MGI PMID:21514421 NCBI chr 2:164,681,441...164,699,564
Ensembl chr 2:164,681,438...164,699,631 		JBrowse link
enlarged lacrimal gland term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx3 paired-like homeodomain transcription factor 3 IAGP MGI PMID:4970465 NCBI chr19:46,123,720...46,136,764
Ensembl chr19:46,124,124...46,136,765 		JBrowse link
increased cornea epithelium thickness term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dstn destrin IAGP MGI PMID:8603845 NCBI chr 2:143,757,251...143,785,244
Ensembl chr 2:143,757,240...143,785,244 		JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:10395790 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Krt12 keratin 12 IAGP MGI PMID:26758872 NCBI chr11:99,306,490...99,313,419
Ensembl chr11:99,306,492...99,313,085 		JBrowse link
G Krt4 keratin 4 IAGP MGI PMID:9727004 NCBI chr15:101,826,970...101,833,170
Ensembl chr15:101,826,970...101,833,170 		JBrowse link
G Nrtn neurturin IAGP MGI PMID:14507865 NCBI chr17:57,058,323...57,064,548
Ensembl chr17:57,058,325...57,064,530 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:10498698 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Pltp phospholipid transfer protein IAGP MGI PMID:21514421 NCBI chr 2:164,681,441...164,699,564
Ensembl chr 2:164,681,438...164,699,631 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) IAGP MGI PMID:20713516 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Slc4a11 solute carrier family 4, sodium bicarbonate transporter-like, member 11 IAGP MGI PMID:20185830 NCBI chr 2:130,526,027...130,539,439
Ensembl chr 2:130,526,033...130,539,439 		JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:20713516 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447 		JBrowse link
lacrimal gland atrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:7505691 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Fas Fas cell surface death receptor IAGP MGI PMID:1565490 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
lacrimal gland degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch 1 IAGP MGI PMID:23293291 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
lacrimal gland hypertrophy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncdn neurochondrin IAGP MGI PMID:12904583 NCBI chr 4:126,637,548...126,647,203
Ensembl chr 4:126,637,543...126,647,231 		JBrowse link
G Vsx2 visual system homeobox 2 IAGP MGI PMID:13994395 NCBI chr12:84,616,602...84,642,231
Ensembl chr12:84,616,536...84,642,231 		JBrowse link
lacrimal gland necrosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klf5 Kruppel-like transcription factor 5 IAGP MGI PMID:21600198 NCBI chr14:99,536,127...99,550,848
Ensembl chr14:99,536,127...99,552,472 		JBrowse link
ocular pterygium term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule IAGP MGI PMID:15690042 NCBI chr 5:17,986,680...18,093,828
Ensembl chr 5:17,986,688...18,093,799 		JBrowse link
symblepharon term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate IAGP MGI PMID:22406534 NCBI chr11:72,342,464...72,380,797
Ensembl chr11:72,342,464...72,380,730 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16883
    vision/eye phenotype 3144
      abnormal eye morphology 2985
        abnormal ocular surface morphology 93
          abnormal conjunctiva morphology + 21
          abnormal cornea epithelium morphology + 56
          abnormal lacrimal apparatus morphology + 36
          abnormal tear film morphology 3
paths to the root