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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of transcription by RNA polymerase I
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Accession:GO:0045943 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of transcription mediated by RNA polymerase I.
Synonyms:exact_synonym: positive regulation of transcription from Pol I promoter;   positive regulation of transcription from RNA polymerase I promoter;   up regulation of transcription from RNA polymerase I promoter;   upregulation of transcription from RNA polymerase I promoter
 narrow_synonym: activation of transcription from RNA polymerase I promoter;   stimulation of transcription from RNA polymerase I promoter


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positive regulation of transcription by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO (PMID:22915762) RGD PMID:22915762 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Bnc1 basonuclin zinc finger protein 1 involved_in ISO (PMID:11152639) RGD PMID:11152639 NCBI chr 1:135,917,676...135,943,333
Ensembl chr 1:135,917,687...135,943,333 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 involved_in ISO (PMID:15471871) RGD PMID:15471871 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689 		JBrowse link
G Dhx33 DEAH-box helicase 33 involved_in ISO
IBA		 (PMID:21930779)
GO_REF:0000033
(MGI:5300123|PMID:21930779)		 RGD
GO_Central		 PMID:21930779 GO_REF:0000033 MGI:5300123 NCBI chr10:55,708,102...55,724,618
Ensembl chr10:55,705,756...55,724,567 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (PMID:22915762)
(MGI:5607215|PMID:22915762)		 RGD PMID:22915762 MGI:5607215 NCBI chr 4:102,805,495...102,866,914
Ensembl chr 4:102,805,510...102,866,911 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 involved_in ISO
ISS
IEA		 (PMID:21555369)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:21555369 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Heatr1 HEAT repeat containing 1 involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr17:58,053,288...58,093,895
Ensembl chr17:58,051,700...58,093,948 		JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO		 GO_REF:0000107
(PMID:31504794)		 Ensembl
RGD		 PMID:31504794 GO_REF:0000107 NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Phf8 PHD finger protein 8 involved_in ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410 		JBrowse link
G Ppp1r15a protein phosphatase 1, regulatory subunit 15A involved_in ISO (MGI:5751679|PMID:14635196) RGD PMID:14635196 MGI:5751679 NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171 		JBrowse link
G Rasl11a RAS-like family 11 member A involved_in ISS
ISO		 GO_REF:0000024
(MGI:4441017|PMID:20168301)		 UniProt
RGD		 PMID:20168301 GO_REF:0000024 MGI:4441017 NCBI chr12:8,258,148...8,260,909
Ensembl chr12:8,258,159...8,262,576 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30540930)		 UniProt
RGD		 PMID:30540930 GO_REF:0000024 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(MGI:4441017|PMID:20168301)		 UniProt
GO_Central
RGD		 PMID:20168301 GO_REF:0000024 GO_REF:0000033 MGI:4441017 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
G Utp15 UTP15, small subunit processome component involved_in ISO
IEA
IBA		 (PMID:17699751)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:17699751 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:29,594,405...29,612,819
Ensembl chr 2:29,594,941...29,612,773 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:17699751) RGD PMID:17699751 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Wdr75 WD repeat domain 75 involved_in ISO
IBA		 (PMID:17699751)
GO_REF:0000033		 RGD
GO_Central		 PMID:17699751 GO_REF:0000033 NCBI chr 9:47,903,214...47,933,399
Ensembl chr 9:47,903,200...47,933,399 		JBrowse link
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in ISO (PMID:26089203) RGD PMID:26089203 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
G Ippk inositol-pentakisphosphate 2-kinase involved_in ISO
IEA		 (PMID:23203802)
GO_REF:0000107		 RGD
Ensembl		 PMID:23203802 GO_REF:0000107 NCBI chr17:15,190,191...15,235,203
Ensembl chr17:15,190,265...15,229,541 		JBrowse link
G Mars1 methionyl-tRNA synthetase 1 involved_in ISO (PMID:10791971) RGD PMID:10791971 NCBI chr 7:63,121,142...63,138,550
Ensembl chr 7:63,121,142...63,138,495 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA		 (PMID:24036451)
GO_REF:0000107		 RGD
Ensembl		 PMID:24036451 GO_REF:0000107 NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Ncl nucleolin involved_in ISO
IEA		 (PMID:24071584)
GO_REF:0000107		 RGD
Ensembl		 PMID:24071584 GO_REF:0000107 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Nol11 nucleolar protein 11 involved_in ISO (PMID:22916032) RGD PMID:22916032 NCBI chr10:92,119,000...92,141,688
Ensembl chr10:92,121,833...92,141,677 		JBrowse link
G Pih1d1 PIH1 domain containing 1 involved_in ISO UniProtKB:P42345|UniProtKB:Q12824 (PMID:22368283), (PMID:24036451) RGD PMID:22368283 PMID:24036451 NCBI chr 1:95,639,597...95,645,295
Ensembl chr 1:95,639,592...95,645,290 		JBrowse link
G Pwp1 PWP1 homolog, endonuclein involved_in ISO (PMID:29065309) RGD PMID:29065309 NCBI chr 7:17,982,730...17,998,728
Ensembl chr 7:17,982,235...17,998,731 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA		 (PMID:22368283)
GO_REF:0000107		 RGD
Ensembl		 PMID:22368283 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO UniProtKB:Q9NWS0 (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      positive regulation of metabolic process 3812
        positive regulation of macromolecule metabolic process 3484
          positive regulation of macromolecule biosynthetic process 2752
            positive regulation of RNA biosynthetic process 1724
              positive regulation of DNA-templated transcription 1722
                positive regulation of transcription by RNA polymerase I 26
                  positive regulation of termination of RNA polymerase I transcription 0
                  positive regulation of transcription elongation by RNA polymerase I 0
                  positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              RNA metabolic process 4542
                RNA biosynthetic process 3411
                  DNA-templated transcription 3388
                    regulation of DNA-templated transcription 3231
                      regulation of transcription by RNA polymerase I 37
                        positive regulation of transcription by RNA polymerase I 26
                          positive regulation of termination of RNA polymerase I transcription 0
                          positive regulation of transcription elongation by RNA polymerase I 0
                          positive regulation of transcription of nucleolar large rRNA by RNA polymerase I 10
paths to the root