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ONTOLOGY REPORT - ANNOTATIONS

Term:clathrin-coated endocytic vesicle
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Accession:GO:0045334 term browser browse the term
Definition:A clathrin-coated, membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance.
Synonyms:xref: NIF_Subcellular:sao1243595998


show annotations for term's descendants           Sort by:
clathrin-coated endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cemip cell migration inducing hyaluronidase 1 located_in ISO
ISS		 (PMID:23509262)
GO_REF:0000024		 RGD
UniProt		 PMID:23509262 GO_REF:0000024 NCBI chr 1:137,906,921...138,062,430
Ensembl chr 1:137,908,920...138,062,415 		JBrowse link
G Cltc clathrin heavy chain is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Cpne2 copine 2 NOT|located_in ISO (MGI:5634886|PMID:21087455) RGD PMID:21087455 MGI:5634886 NCBI chr19:10,434,277...10,472,146
Ensembl chr19:10,434,277...10,471,820 		JBrowse link
G Cpne6 copine 6 located_in ISO (MGI:5634886|PMID:21087455) RGD PMID:21087455 MGI:5634886 NCBI chr15:28,998,293...29,005,044
Ensembl chr15:28,998,293...29,005,044 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 located_in ISO (PMID:15814706) RGD PMID:15814706 NCBI chr 9:62,318,874...62,325,978
Ensembl chr 9:62,319,312...62,324,963 		JBrowse link
G Dnm2 dynamin 2 IDA RGD PMID:11925437 RGD:728683 NCBI chr 8:19,978,313...20,060,162
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in
is_active_in		 ISO
IBA		 (PMID:25869669)
GO_REF:0000033
(MGI:5763358|PMID:25869668)		 RGD
GO_Central		 PMID:25869668 PMID:25869669 GO_REF:0000033 MGI:5763358 NCBI chr 1:183,190,480...183,270,276
Ensembl chr 1:183,190,480...183,270,276 		JBrowse link
G Lmbrd1 LMBR1 domain containing 1 part_of
located_in		 ISS
ISO		 GO_REF:0000024
(PMID:24078630)		 UniProt
RGD		 PMID:24078630 GO_REF:0000024 NCBI chr 9:27,096,387...27,178,095
Ensembl chr 9:27,096,297...27,178,090 		JBrowse link
G Myo1e myosin IE located_in ISS
ISO		 GO_REF:0000024
(PMID:17257598)		 UniProt
RGD		 PMID:17257598 GO_REF:0000024 NCBI chr 8:70,887,934...71,080,180
Ensembl chr 8:70,887,870...71,080,169 		JBrowse link
G Myo6 myosin VI located_in ISO (PMID:11447109) RGD PMID:11447109 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Ngfr nerve growth factor receptor IDA during receptor recycling in response to NGF binding RGD PMID:17897318 RGD:5508756 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518 		JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in ISO (PMID:16950109) RGD PMID:16950109 NCBI chr12:40,967,102...40,981,183
Ensembl chr12:40,967,103...40,991,195 		JBrowse link
G Slc5a7 solute carrier family 5 member 7 IDA RGD PMID:15953352 RGD:9999386 NCBI chr 9:7,595,440...7,626,258
Ensembl chr 9:7,595,444...7,626,258 		JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of ISO
IBA		 (PMID:23676497)
GO_REF:0000033
(MGI:5514106|PMID:23676497)		 RGD
GO_Central		 PMID:23676497 GO_REF:0000033 MGI:5514106 NCBI chr 1:95,384,306...95,414,170
Ensembl chr 1:95,384,309...95,414,147 		JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of ISO
IBA
IEA
IMP		 (PMID:23676497)
GO_REF:0000033
GO_REF:0000117
(MGI:5514106|PMID:23676497)
PMID:12086608		 RGD
GO_Central
UniProt		 PMID:23676497 PMID:12086608 GO_REF:0000033 GO_REF:0000117 MGI:5514106, RGD:12793054 NCBI chr 1:196,652,315...196,725,609
Ensembl chr 1:196,652,337...196,725,603 		JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of ISO (PMID:12086608), (PMID:23676497)
(MGI:5514106|PMID:23676497)		 RGD PMID:12086608 PMID:23676497 MGI:5514106 NCBI chr10:68,099,397...68,205,023
Ensembl chr10:68,099,547...68,205,013 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of IDA
IBA
ISO		 PMID:12086608
GO_REF:0000033
(MGI:5514106|PMID:23676497)
(PMID:23676497)		 GO_Central
RGD		 PMID:23676497 PMID:12086608 GO_REF:0000033 MGI:5514106, RGD:12793054 NCBI chr11:80,355,307...80,364,218
Ensembl chr11:80,328,041...80,364,140 		JBrowse link
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 part_of IDA
IEA
ISO		 GO_REF:0000107
GO_REF:0000002
PMID:2040623
(MGI:5882913|PMID:12086608)		 Ensembl
InterPro
RGD		 PMID:12086608 PMID:7593184 PMID:2040623 GO_REF:0000002 GO_REF:0000107 MGI:5882913, RGD:2306270, RGD:727584 NCBI chr 1:77,417,496...77,428,903
Ensembl chr 1:77,417,477...77,428,905 		JBrowse link
G Btbd8 BTB domain containing 8 located_in IDA PMID:29262337 UniProt PMID:29262337 RGD:13601995 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (MGI:4887327|PMID:17626015) RGD PMID:17626015 MGI:4887327 NCBI chr 5:124,045,865...124,146,221
Ensembl chr 5:124,045,926...124,146,221 		JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of ISS
ISO
IEA		 PMID:17626015
(MGI:4887327|PMID:17626015)
GO_REF:0000107		 RGD
Ensembl		 PMID:17626015 PMID:17626015 GO_REF:0000107 MGI:4887327, RGD:8554282 NCBI chr 5:117,536,752...117,734,593
Ensembl chr 5:117,537,746...117,734,575 		JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:14724281 GO_REF:0000033, RGD:2317430 NCBI chr16:7,713,630...7,716,491 JBrowse link
G Ston1 stonin 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:5,843,186...5,892,557
Ensembl chr 6:5,843,185...5,892,449 		JBrowse link
G Ston2 stonin 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:110,567,485...110,676,376
Ensembl chr 6:110,567,485...110,676,376 		JBrowse link
G Tbc1d5 TBC1 domain family, member 5 located_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,503,328...4,017,131
Ensembl chr 9:3,513,623...4,016,913 		JBrowse link
clathrin coat of endocytic vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epn2 epsin 2 IDA RGD PMID:10567358 RGD:708327 NCBI chr10:46,197,785...46,259,673
Ensembl chr10:46,197,785...46,259,642 		JBrowse link
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin, light chain A located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041		 Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr 5:58,244,253...58,263,480
Ensembl chr 5:58,245,442...58,263,472 		JBrowse link
G Cltc clathrin heavy chain located_in TAS Reactome:R-RNO-177478
Reactome:R-RNO-182041		 Reactome Reactome:R-RNO-177478 Reactome:R-RNO-182041 NCBI chr10:71,517,661...71,574,591
Ensembl chr10:71,517,663...71,573,737 		JBrowse link
G Tyrp1 tyrosinase-related protein 1 located_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20391
      cytoplasm 11695
        cytoplasmic vesicle 2038
          endocytic vesicle 228
            clathrin-coated endocytic vesicle 28
              Syp1 complex 0
              clathrin-coated endocytic vesicle lumen 0
              clathrin-coated endocytic vesicle membrane + 16
              clathrin-coated phagocytic vesicle + 0
Path 2
Term Annotations click to browse term
  cellular_component 20629
    cellular anatomical entity 20391
      organelle 13803
        intracellular organelle 13394
          intracellular membrane-bounded organelle 11846
            intracellular vesicle 2045
              cytoplasmic vesicle 2038
                coated vesicle 234
                  clathrin-coated vesicle 142
                    clathrin-coated endocytic vesicle 28
                      Syp1 complex 0
                      clathrin-coated endocytic vesicle lumen 0
                      clathrin-coated endocytic vesicle membrane + 16
                      clathrin-coated phagocytic vesicle + 0
paths to the root